Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76430 523 / 0 PHT1;9 phosphate transporter 1;9 (.1) AT1G20860 498 / 1e-172 PHT1;8 phosphate transporter 1;8 (.1) AT2G38940 401 / 2e-134 PHT1;4, ATPT2 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2, phosphate transporter 1;4 (.1) AT5G43350 397 / 6e-133 PHT1;1, ATPT1 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 1, phosphate transporter 1;1 (.1) AT5G43360 392 / 2e-131 PHT1;3, ATPT4, PHT3 PHOSPHATE TRANSPORTER 3, phosphate transporter 1;3 (.1) AT3G54700 391 / 9e-131 PHT1;7 phosphate transporter 1;7 (.1) AT2G32830 391 / 1e-130 PHT1;5, PHT5 PHOSPHATE TRANSPORTER 5, phosphate transporter 1;5 (.1) AT5G43340 380 / 1e-126 PHT1;6, PHT6 PHOSPHATE TRANSPORTER 6, phosphate transporter 1;6 (.1) AT5G43370 371 / 4e-123 PHT1;2, APT1, PHT2 ARABIDOPSIS PHOSPHATE TRANSPORTER 1, phosphate transporter 2 (.1.2) AT4G08878 154 / 5e-43 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025163 [exp] 613 / 0 AT1G76430 431 / 5e-148 phosphate transporter 1;9 (.1) Lus10014754 [exp] 412 / 1e-138 AT2G38940 904 / 0.0 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2, phosphate transporter 1;4 (.1) Lus10011826 [exp] 404 / 1e-135 AT5G43360 868 / 0.0 PHOSPHATE TRANSPORTER 3, phosphate transporter 1;3 (.1) Lus10021191 [exp] 400 / 9e-134 AT5G43350 858 / 0.0 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 1, phosphate transporter 1;1 (.1) Lus10003560 [exp] 399 / 2e-133 AT3G54700 919 / 0.0 phosphate transporter 1;7 (.1) Lus10033886 [exp] 397 / 5e-133 AT3G54700 919 / 0.0 phosphate transporter 1;7 (.1) Lus10016635 [exp] 368 / 1e-121 AT3G54700 888 / 0.0 phosphate transporter 1;7 (.1) Lus10027575 [exp] 367 / 2e-121 AT5G43360 622 / 0.0 PHOSPHATE TRANSPORTER 3, phosphate transporter 1;3 (.1) Lus10012860 [exp] 356 / 8e-117 AT5G43360 669 / 0.0 PHOSPHATE TRANSPORTER 3, phosphate transporter 1;3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G256100 [exp] 566 / 0 AT1G76430 613 / 0.0 phosphate transporter 1;9 (.1) Potri.002G005500 [exp] 554 / 0 AT1G76430 572 / 0.0 phosphate transporter 1;9 (.1) Potri.005G223600 [exp] 405 / 5e-136 AT3G54700 856 / 0.0 phosphate transporter 1;7 (.1) Potri.010G071500 [exp] 401 / 1e-134 AT2G38940 794 / 0.0 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2, phosphate transporter 1;4 (.1) Potri.002G038900 [exp] 396 / 7e-133 AT3G54700 823 / 0.0 phosphate transporter 1;7 (.1) Potri.001G318500 [exp] 392 / 8e-131 AT2G32830 813 / 0.0 PHOSPHATE TRANSPORTER 5, phosphate transporter 1;5 (.1) Potri.010G071600 [exp] 374 / 2e-123 AT2G38940 762 / 0.0 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2, phosphate transporter 1;4 (.1) Potri.010G071700 [exp] 366 / 7e-121 AT2G38940 764 / 0.0 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2, phosphate transporter 1;4 (.1) Potri.010G072000 [exp] 365 / 1e-120 AT2G38940 765 / 0.0 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2, phosphate transporter 1;4 (.1) Potri.005G175500 [exp] 364 / 5e-120 AT3G54700 728 / 0.0 phosphate transporter 1;7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10016042 pacid=23154423 polypeptide=Lus10016042 locus=Lus10016042.g ID=Lus10016042.BGIv1.0 annot-version=v1.0 ATGGCGCCGCCGAAAGTGCTGTCGACGATGGACACGGCGAGGACGCAGTACTACCATTTCAAGGCGACAATCGTGGCCGGGATGGGGCTCTTCAGCGACG CCTACAGCCTCTTCTGCATCCCTCCGATCACCACCATCCTCGCTCACGTGTACTACCCGCACAACAAAGACCACCACCTCCCCGTCGAAGTCGCCGTCGT CATGATCGGAATCCCGCTCCTCGGCACCGCCGTCGGCCAGCTCATCTTCGGCTACCTTGGGGACCGTGTCGGAAGGCGCTCCGTCTACGGCCTGGCTCTT ATCATCATGGTCTGCAGCTCGTTTGGATGCGGCTTCTCCGTCTGCACCACTAAGGGTTGTGTGCTCGGAAGCCTCGCATTCTTCAGGTTCCTGCTCGGAG TGGGGATCGGAGGGGATTACCCACTCTCAGCCACCATCATGTCGGAGTTCGCCAACAAGAGCACTCGGGGAGCGTTCATCGCGGGTGTGTTCTCGATGCA AGGCTTTGGGATTCTGGCCAGCTCCATCGTCACCGTCGTGGTCTGCAAGGTGTTCCAGGTGTCGACGCAGGGGGTGTCGGGGGGTAGCGAACGTACGCCG GCGGGAGCTGGGGGGTACACGGCACTGGTGGAGAACAACGTAATGCAGGCAGCAAGGGACATGGAGAAGCTACTCGACATCCCACTCTGCCAAATCCAAG AAGACAACCCTCTCCACGACCATCCCCAACCGCCGGATCAAACCACCACCACAACATACACAATCAACGAATTATCTTCCACAACGACGTCGTCTACCAC CACCTTCTTCCGCGACCTCTTATCCAAACCCTTCCTTGCACTCCACGGCACCAACCTCATGTCATGCGCCGCCAACTGGTTCCTCCTCGATGTGGCGTTC TACAGTACCAACCTCTTCCAGTCCCAAATCTACAAGCAGTTCCTCAAGCTCCAAACCTCCTCCGTCGACGTCTACGAGGAAGCCATCCGGATTGCCGGCT TCCAAGGCATCCTCGCCATATGCTCCACCATCCCGGGTTACTACTTCACCGTCTTCTTCATCGACCGGGTGGGCCGCCGCAAGATCCAGATCATGGGCTT TTGTCTCATGGGCTTCGTCTACTTGGGCCTTGGGATTCCTTACTTCCACTGGGCTGATAACACTAACGCTGGGTTTCTTATACTGTATGGACTGACTTTC TTCTTCGCCAACTTTGGGCCTAATACGACTACATTTATTGTGCCGGCGGAGCTGTTCCCGGCGAGGTTTAGGTCCACGTGTCACGGGATATCGGGGGCTT CTGGGAAGATTGGGGCGGTGGTCGGGGCTGTTGGGTTTCAGATGGCGGTGAGGAGTAATGTTTATGGAAACCATAGTAAGAATATTGATGAGGATGATGA TGATGATGGAAATCCTAGTGTTAAGCCTATGACGATTGCGTTGGTTGTGCTGGCGGCAGTTTGTTTTCTGGGGATGGTGATTACGTATGCCTTCACTCCT GAAACTATGGGGAGGTCATTGGAGGACAATGAGAGTGATGATGATACAGATGATGATGTTCTTCATCATGATCAGCCTGTGGATGATGGCAATACGATTG GTGGAGTTGGCAATTGA
AA sequence Show only first row Show all	>Lus10016042 pacid=23154423 polypeptide=Lus10016042 locus=Lus10016042.g ID=Lus10016042.BGIv1.0 annot-version=v1.0 MAPPKVLSTMDTARTQYYHFKATIVAGMGLFSDAYSLFCIPPITTILAHVYYPHNKDHHLPVEVAVVMIGIPLLGTAVGQLIFGYLGDRVGRRSVYGLAL IIMVCSSFGCGFSVCTTKGCVLGSLAFFRFLLGVGIGGDYPLSATIMSEFANKSTRGAFIAGVFSMQGFGILASSIVTVVVCKVFQVSTQGVSGGSERTP AGAGGYTALVENNVMQAARDMEKLLDIPLCQIQEDNPLHDHPQPPDQTTTTTYTINELSSTTTSSTTTFFRDLLSKPFLALHGTNLMSCAANWFLLDVAF YSTNLFQSQIYKQFLKLQTSSVDVYEEAIRIAGFQGILAICSTIPGYYFTVFFIDRVGRRKIQIMGFCLMGFVYLGLGIPYFHWADNTNAGFLILYGLTF FFANFGPNTTTFIVPAELFPARFRSTCHGISGASGKIGAVVGAVGFQMAVRSNVYGNHSKNIDEDDDDDGNPSVKPMTIALVVLAAVCFLGMVITYAFTP ETMGRSLEDNESDDDTDDDVLHHDQPVDDGNTIGGVGN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76430		PHT1;9	phosphate transporter 1;9 (.1)		Lus10016042 [exp]	0	1
AT3G60580	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10015888 [exp]	1.0	0.8883
					Lus10011661 [exp]	5.7	0.8652
AT5G10530			Concanavalin A-like lectin pro...		Lus10007073 [exp]	6.5	0.8678
AT2G17040	NAC	ANAC036	NAC domain containing protein ...		Lus10003333 [exp]	6.8	0.8712
AT2G45760		BAL, BAP2	BON ASSOCIATION PROTEIN 1-LIKE...		Lus10008004 [exp]	9.7	0.8620
AT5G22380	NAC	ANAC090	NAC domain containing protein ...		Lus10004846 [exp]	10.7	0.8533
AT4G19390			Uncharacterised protein family...		Lus10032866 [exp]	11.0	0.7752
AT2G45080		CYCP3;1	cyclin p3;1 (.1)		Lus10028174 [exp]	14.1	0.8453
AT1G05710	bHLH	bHLH153	basic helix-loop-helix (bHLH) ...		Lus10027064 [exp]	19.1	0.7949
AT3G53810			Concanavalin A-like lectin pro...		Lus10040774 [exp]	20.9	0.8242

Compare expression of checked genes

Lus10016042 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.