Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33585 73 / 2e-17 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G257100 [exp] 74 / 1e-18 AT2G33585 132 / 2e-40 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016044 pacid=23154428 polypeptide=Lus10016044 locus=Lus10016044.g ID=Lus10016044.BGIv1.0 annot-version=v1.0 ATGCCGTCGGCCGGTGGGTGGGGAAGCAGAAGCATGGGGAACGTGAGGTCATTCGTCGGGAATTGTCTGGGAGGACTCAGGGGAGGAACCAGCTTGGCTT CCTGGATCGTCGCCGGTTCCATTGCCTATTATCTCTGGGTCAAGCCTTCTCAAGACCTCCGTCGCCAACAACAGGTTTTGCTCCGATTCCGAGTCCTAGT CAGTCATGGTTGCTTGTTCTCTAACCTGTATTTGCCTCTGTTGCAGGAAAGGACTGCTGTAGAGAAATCCAAAGAGCAATCATAG
AA sequence Show only first row Show all	>Lus10016044 pacid=23154428 polypeptide=Lus10016044 locus=Lus10016044.g ID=Lus10016044.BGIv1.0 annot-version=v1.0 MPSAGGWGSRSMGNVRSFVGNCLGGLRGGTSLASWIVAGSIAYYLWVKPSQDLRRQQQVLLRFRVLVSHGCLFSNLYLPLLQERTAVEKSKEQS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33585			unknown protein		Lus10016044 [exp]	0	1
AT4G08980		FBW2	F-BOX WITH WD-40 2 (.1.2.3.4.5...		Lus10036483 [exp]	10.5	0.6759
AT1G55460	C2H2ZnF		DNA/RNA-binding protein Kin17,...		Lus10005161 [exp]	10.5	0.7005
AT3G32930			unknown protein		Lus10013750 [exp]	10.6	0.6485
AT3G47940			DNAJ heat shock family protein...		Lus10036668 [exp]	15.5	0.6538
AT5G55670			RNA-binding (RRM/RBD/RNP motif...		Lus10038757 [exp]	16.1	0.6409
AT2G36930	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10014426 [exp]	17.5	0.6829
AT4G26055			unknown protein		Lus10011865 [exp]	20.9	0.6130
AT1G71180			6-phosphogluconate dehydrogena...		Lus10001349 [exp]	23.1	0.6908
AT2G42620		PPS, PP2, ORE9,...	PLEIOTROPIC PHOTOSIGNALING, OR...		Lus10020707 [exp]	37.1	0.5959
AT4G23330			unknown protein		Lus10032266 [exp]	37.3	0.6441

Compare expression of checked genes

Lus10016044 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.