Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76510 369 / 5e-125 ARID ARID/BRIGHT DNA-binding domain-containing protein (.1.2.3) AT1G20910 334 / 1e-111 ARID ARID/BRIGHT DNA-binding domain-containing protein (.1) AT2G17410 318 / 8e-101 ARID ARID/BRIGHT DNA-binding domain-containing protein (.1.2) AT1G76110 44 / 0.0001 ARID HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) AT1G04880 43 / 0.0003 ARID HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001618 [exp] 322 / 7e-105 AT2G17410 395 / 4e-129 ARID/BRIGHT DNA-binding domain-containing protein (.1.2) Lus10022981 [exp] 321 / 3e-104 AT2G17410 395 / 1e-128 ARID/BRIGHT DNA-binding domain-containing protein (.1.2) Lus10013852 [exp] 216 / 5e-65 AT1G76510 265 / 1e-83 ARID/BRIGHT DNA-binding domain-containing protein (.1.2.3) Lus10025165 [exp] 212 / 6e-62 AT2G33610 422 / 3e-142 CHROMATIN REMODELING COMPLEX SUBUNIT B, switch subunit 3 (.1) Lus10007127 [exp] 52 / 7e-07 AT1G04880 376 / 3e-127 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) Lus10016671 [exp] 48 / 1e-05 AT1G04880 365 / 5e-123 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) Lus10021228 [exp] 43 / 0.0003 AT1G76110 375 / 4e-130 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) Lus10026569 [exp] 0 / 1 AT1G76510 164 / 1e-51 ARID/BRIGHT DNA-binding domain-containing protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G003700 [exp] 420 / 1e-144 AT1G76510 451 / 5e-157 ARID/BRIGHT DNA-binding domain-containing protein (.1.2.3) Potri.004G208900 [exp] 337 / 5e-111 AT2G17410 416 / 6e-137 ARID/BRIGHT DNA-binding domain-containing protein (.1.2) Potri.001G456500 [exp] 313 / 4e-102 AT2G17410 420 / 3e-139 ARID/BRIGHT DNA-binding domain-containing protein (.1.2) Potri.011G145450 [exp] 307 / 2e-99 AT2G17410 423 / 3e-140 ARID/BRIGHT DNA-binding domain-containing protein (.1.2) Potri.005G257300 [exp] 228 / 4e-71 AT1G76510 221 / 1e-68 ARID/BRIGHT DNA-binding domain-containing protein (.1.2.3) Potri.013G054900 [exp] 50 / 9e-07 AT1G54400 97 / 3e-25 HSP20-like chaperones superfamily protein (.1) Potri.017G055200 [exp] 49 / 6e-06 AT1G04880 364 / 3e-122 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) Potri.001G315200 [exp] 47 / 2e-05 AT1G04880 376 / 6e-128 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF01388 [flax] [poplar] ARID ARID/BRIGHT DNA binding domain CL0190 [flax] [poplar] HSP20 PF00011 [flax] [poplar] HSP20 Hsp20/alpha crystallin family
Representative CDS sequence Show only first row Show all	>Lus10016045 pacid=23154409 polypeptide=Lus10016045 locus=Lus10016045.g ID=Lus10016045.BGIv1.0 annot-version=v1.0 ATGTTAGATACAGAAATGGTGCCCGTTCAAGATGGTACTGAAAATGATGCTGATGTCGACCTTCTTGAGGAATCTACTGACCTAGGTCAAAATGATCAAA TGCATTTGAATTCTGAAAATGCTGCCGTCCGCGTTGTTGTGATGAGTGATGATAACTGTATCATGACCGGCAGTGACAGTCCCACCATCAGTGCTCCAGC TACTCAACATACTACTCCTCAACCCGATGGCACGGCTGATATGAATCGCGGTAGGGAAGATGATGCAGGTCTTCAATCCAAGTCAATAACCGCCACTCCT CGACCTCTCATAAAGTACAGTAGTTCTAAATCGAAGCATGGAAGTTCTTCCAAAGCCAAGAGTGCTTGGACTGACCTCGAGACGGGAGATGTTGACGAGG CAGGGACCCTAGAGGAAAGGGAGACATTCATGAGAGAGCTGGAAGATTTTCACAGGGACAATGCGCTTGAGTTCAAGCCCCAAAAATTCTATAAAGTGCC ATTGAACTGGCTGAAGCTATACAGAGTTGTCATCAAATTGGGAGGCTATGACGTGGTCACTGCATCAAAGTTATGGCGGGACGTTGGAGCGTTCTTTCAC CCTCCTAAGACATGCACTACTGTGTCTTGGTCATTCCGCGTATTTTATCAGAAGACACTCTTGGAATATGAAAAGCACAAGAGGCAAACCGGCGAGCTTC ACCTTCCTGATTCACCCCAGCATCCAACTGTAACCACTGTAAAAGAGACAAGTGACAATCAAGTGGCAGGGTCAGTTAGGACAAGGAGGGATGCTGCTGC TCGTGCTATGCAAGGCTGGAATGCTCAGCGTCTTGCTAGATGCGGAGAGGACAAGAGTATGGCTCCTGCAGCTAGGCGTGAAAAACCTCTCAAGAACATT GGTTTGCTTACGCATAAGACAACCAAGGTGGAGAATGTTGGGAGAGCAGACAACATGGTGGCAGTTAAGGAGTTAATAATACTTTTCCTTGTCCTTTTTA CTGATTCACTCGACGTGGGGATTGTGGACATCGGACCGGCCGCTGATTGGGTGAAGATCAACGTGCGGGAAACTAAAGACTGTTTTGAGGTCCACGCTTT GGTGCCTGGTTTTCTTCGGGAGGAGGTACGAGTTCAGTCGGATCCTGCTGGACGTCTGGTCATAACAGGACAGCCGGAGCAGCTTCAAAATCCTTGGGGT ATAACCCCTTTCAAGAAGGTTGTAAGCTTACCTGGAAGAATCAATCCATTGCAGACGAGTGCTGTGGTAAGTCTACATGGTCGACTGTATGTACGCATTC CCTTCGAACAGAGCCCTATCTGA
AA sequence Show only first row Show all	>Lus10016045 pacid=23154409 polypeptide=Lus10016045 locus=Lus10016045.g ID=Lus10016045.BGIv1.0 annot-version=v1.0 MLDTEMVPVQDGTENDADVDLLEESTDLGQNDQMHLNSENAAVRVVVMSDDNCIMTGSDSPTISAPATQHTTPQPDGTADMNRGREDDAGLQSKSITATP RPLIKYSSSKSKHGSSSKAKSAWTDLETGDVDEAGTLEERETFMRELEDFHRDNALEFKPQKFYKVPLNWLKLYRVVIKLGGYDVVTASKLWRDVGAFFH PPKTCTTVSWSFRVFYQKTLLEYEKHKRQTGELHLPDSPQHPTVTTVKETSDNQVAGSVRTRRDAAARAMQGWNAQRLARCGEDKSMAPAARREKPLKNI GLLTHKTTKVENVGRADNMVAVKELIILFLVLFTDSLDVGIVDIGPAADWVKINVRETKDCFEVHALVPGFLREEVRVQSDPAGRLVITGQPEQLQNPWG ITPFKKVVSLPGRINPLQTSAVVSLHGRLYVRIPFEQSPI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76510	ARID		ARID/BRIGHT DNA-binding domain...		Lus10016045 [exp]	0	1
AT1G19485			Transducin/WD40 repeat-like su...		Lus10039804 [exp]	2.8	0.8668
AT2G26350		PEX10, ATPEX10	peroxin 10 (.1)		Lus10020007 [exp]	7.3	0.8707
AT1G04160		XI-B, XI-8, ATX...	MYOSIN XI-8, ARABIDOPSIS THALI...		Lus10009791 [exp]	9.5	0.8662
AT4G11970			YTH family protein (.1.2.3)		Lus10007048 [exp]	11.3	0.8646
AT2G31530		EMB2289, SCY2	SECY HOMOLOG 2, EMBRYO DEFECTI...		Lus10014663 [exp]	11.8	0.8519
AT1G73970			unknown protein		Lus10036972 [exp]	12.4	0.8341
AT4G04180			P-loop containing nucleoside t...		Lus10009809 [exp]	14.1	0.7837
AT3G51740		IMK2	inflorescence meristem recepto...		Lus10022678 [exp]	16.0	0.8229
AT3G04820			Pseudouridine synthase family ...		Lus10015931 [exp]	20.8	0.8249
AT1G40087			Plant transposase (Ptta/En/Spm...		Lus10035798 [exp]	21.4	0.8354

Compare expression of checked genes

Lus10016045 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.