Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20925 392 / 3e-133 Auxin efflux carrier family protein (.1) AT1G76520 382 / 7e-131 Auxin efflux carrier family protein (.1.2) AT1G76530 320 / 5e-106 Auxin efflux carrier family protein (.1) AT5G65980 314 / 5e-104 Auxin efflux carrier family protein (.1) AT2G17500 311 / 9e-103 Auxin efflux carrier family protein (.1.2.3.4) AT5G01990 184 / 3e-53 Auxin efflux carrier family protein (.1) AT1G71090 176 / 3e-50 Auxin efflux carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025166 [exp] 679 / 0 AT1G76520 455 / 8e-160 Auxin efflux carrier family protein (.1.2) Lus10004287 [exp] 389 / 6e-133 AT1G20925 430 / 1e-148 Auxin efflux carrier family protein (.1) Lus10030715 [exp] 384 / 2e-131 AT1G20925 295 / 6e-96 Auxin efflux carrier family protein (.1) Lus10012708 [exp] 305 / 4e-100 AT5G65980 494 / 2e-175 Auxin efflux carrier family protein (.1) Lus10001303 [exp] 303 / 2e-99 AT5G65980 491 / 6e-174 Auxin efflux carrier family protein (.1) Lus10035978 [exp] 297 / 3e-97 AT5G65980 486 / 2e-172 Auxin efflux carrier family protein (.1) Lus10016688 [exp] 281 / 2e-85 AT2G17525 655 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10035610 [exp] 192 / 3e-56 AT5G01990 605 / 0.0 Auxin efflux carrier family protein (.1) Lus10003240 [exp] 190 / 1e-53 AT5G01990 610 / 0.0 Auxin efflux carrier family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G003500 [exp] 465 / 3e-163 AT1G20925 499 / 4e-176 Auxin efflux carrier family protein (.1) Potri.001G456300 [exp] 382 / 2e-130 AT1G76520 382 / 5e-131 Auxin efflux carrier family protein (.1.2) Potri.001G456400 [exp] 365 / 8e-124 AT1G76520 419 / 1e-145 Auxin efflux carrier family protein (.1.2) Potri.003G108100 [exp] 356 / 4e-120 AT1G76520 398 / 4e-137 Auxin efflux carrier family protein (.1.2) Potri.011G145700 [exp] 347 / 8e-117 AT1G76520 396 / 2e-136 Auxin efflux carrier family protein (.1.2) Potri.011G145600 [exp] 345 / 5e-116 AT1G76520 368 / 2e-125 Auxin efflux carrier family protein (.1.2) Potri.005G099300 [exp] 310 / 7e-102 AT2G17500 475 / 2e-167 Auxin efflux carrier family protein (.1.2.3.4) Potri.001G125501 [exp] 213 / 3e-64 AT1G76520 266 / 6e-85 Auxin efflux carrier family protein (.1.2) Potri.016G141700 [exp] 178 / 3e-51 AT5G01990 622 / 0.0 Auxin efflux carrier family protein (.1) Potri.006G112200 [exp] 172 / 4e-49 AT5G01990 602 / 0.0 Auxin efflux carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF03547 [flax] [poplar] Mem_trans Membrane transport protein
Representative CDS sequence Show only first row Show all	>Lus10016046 pacid=23154420 polypeptide=Lus10016046 locus=Lus10016046.g ID=Lus10016046.BGIv1.0 annot-version=v1.0 ATGGCGGTTTTAGATCTGTTCATAGCATCAACCATACCAGTGCTCAAGGTGCTGTTAGTCACTGCACTTGGCACATTCCTTGCTCTTGACCCTGTCAATG TCTTGGGTCCCGATGCCAGAAAGCACGTCAACAATATTGTGTTCTACGTGTTCAATCCAGCACTCATGATAGCCAACCTGTCCAAGACCATAACTTTCCA ACAGATGGTTAAACTATGGTTCATGCCTGTCAACATCCTGATAACCTTCGTGGTCGGATCGGTGTTGGGGTGGGTTGTCTTACAGCTGACGAGGCCGCCG CCAAAGCTGAGAGGGCTCATAGTAGGGTGCTGTGCAGGTGGGAATTTGGGGAACATGTTCTTCGTGATGATCCCAGCCATCTGTAAAGAGAAAGGCAGCC CCTTTGGCGCCCCTGAAGTTTGTCAGTCTTATGGGTTGGCTTACGTCTCTGTCTCCATGGCCGTGGGAGCTATCTATCTGTGGACTTATGTGTACAACAT CATGCGTGCATCGACGACATCAGTAGTAGCAGTTGAAGATGCAGAGAAGCTTCCCATCAGTGTAGATACATCAACAGCATCACCCAAAGATGACTCAATT GAACGCCCACTTCTTGAGAATTCTTCACCAACGAGTAAGTCAACTCGTGATGCATGCTGCTTGTTCCCTGAAAAGCTGAAGCAAGGACTGAGCAACACTC TCGGAAGTGTTAACTGGAAGACCCTCTTTGCACCTTCCACCATCGGTGTGATTATTGGATTCTCGATTGGGCTGACCCCACCAATAAAGAACATGCTCGT GGGAGACGAAGCTCCTCTTCGTGTTATTCAAGATTGTGCTGCCTTGTTAGGAGATGCAGCAATCCCTACTCTAACCCTGCTAGTGGGAGCTAATCTACTC AGAGGGTTGAAAGGAGGGTCAGAGGTGAAGAAGACTGTGATATTAGGGGTGGTTCTAGCACGGTACGTGGCGCTGCCGCTGGTTGGAATAGTGGTGGTGA AAGGGGCATTGCGTTTTGGTTTCATCCCGTCAACCGACCCGCTCTATCAGTTCATTCTCCTCCTTCAGTTCACTGTCCCTCCTGCAATGAATATAGACTT GGGTTATATAATGGTGAAGCACAACAAACAAGCATTGTTTTGTTCCAATCAATCATCTGCTGGATCTAGTCTTCTCTGTATAATTCCTTCATTCGACGAA AGCATCTCAGAGACCCACCAATGCACGAAAGCAATGATCTTTTGGAAAATGGATTACGACTTGAAACCCGTGGATCTTTTTGAAGGTGCATTACCACACG GATAA
AA sequence Show only first row Show all	>Lus10016046 pacid=23154420 polypeptide=Lus10016046 locus=Lus10016046.g ID=Lus10016046.BGIv1.0 annot-version=v1.0 MAVLDLFIASTIPVLKVLLVTALGTFLALDPVNVLGPDARKHVNNIVFYVFNPALMIANLSKTITFQQMVKLWFMPVNILITFVVGSVLGWVVLQLTRPP PKLRGLIVGCCAGGNLGNMFFVMIPAICKEKGSPFGAPEVCQSYGLAYVSVSMAVGAIYLWTYVYNIMRASTTSVVAVEDAEKLPISVDTSTASPKDDSI ERPLLENSSPTSKSTRDACCLFPEKLKQGLSNTLGSVNWKTLFAPSTIGVIIGFSIGLTPPIKNMLVGDEAPLRVIQDCAALLGDAAIPTLTLLVGANLL RGLKGGSEVKKTVILGVVLARYVALPLVGIVVVKGALRFGFIPSTDPLYQFILLLQFTVPPAMNIDLGYIMVKHNKQALFCSNQSSAGSSLLCIIPSFDE SISETHQCTKAMIFWKMDYDLKPVDLFEGALPHG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20925			Auxin efflux carrier family pr...		Lus10016046 [exp]	0	1
AT2G02240		MEE66	maternal effect embryo arrest ...		Lus10023207 [exp]	4.4	0.9792
AT5G40690			unknown protein		Lus10010488 [exp]	4.5	0.9774
AT1G16120		WAKL1	wall associated kinase-like 1 ...		Lus10008105 [exp]	6.9	0.9788
AT4G35180		LHT7	LYS/HIS transporter 7 (.1)		Lus10022642 [exp]	7.5	0.9785
AT2G15480		UGT73B5	UDP-glucosyl transferase 73B5 ...		Lus10019833 [exp]	15.2	0.9774
AT4G15480		UGT84A1	UDP-Glycosyltransferase superf...		Lus10014105 [exp]	15.9	0.9681
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Lus10002671 [exp]	16.9	0.9499
AT5G02790		GSTL3	Glutathione transferase L3, Gl...		Lus10015049 [exp]	18.9	0.9712
AT3G62150		ABCB21, PGP21	ATP-binding cassette B21, P-gl...		Lus10009988 [exp]	19.9	0.9705
AT4G19880			Glutathione S-transferase fami...		Lus10036209 [exp]	20.5	0.9630

Compare expression of checked genes

Lus10016046 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.