Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20950 1004 / 0 Phosphofructokinase family protein (.1) AT1G76550 1001 / 0 Phosphofructokinase family protein (.1) AT4G04040 378 / 5e-124 MEE51 maternal effect embryo arrest 51, Phosphofructokinase family protein (.1) AT1G12000 372 / 1e-121 Phosphofructokinase family protein (.1) AT5G56630 56 / 6e-08 PFK7 phosphofructokinase 7 (.1) AT4G26270 55 / 1e-07 PFK3 phosphofructokinase 3 (.1) AT4G32840 49 / 7e-06 PFK6 phosphofructokinase 6 (.1) AT4G29220 49 / 8e-06 PFK1 phosphofructokinase 1 (.1) AT5G61580 46 / 9e-05 PFK4 phosphofructokinase 4 (.1.2) AT5G47810 44 / 0.0003 PFK2 phosphofructokinase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025167 [exp] 1176 / 0 AT1G20950 1075 / 0.0 Phosphofructokinase family protein (.1) Lus10038700 [exp] 309 / 9e-98 AT1G12000 875 / 0.0 Phosphofructokinase family protein (.1) Lus10037972 [exp] 188 / 1e-52 AT4G04040 498 / 9e-173 maternal effect embryo arrest 51, Phosphofructokinase family protein (.1) Lus10005488 [exp] 61 / 2e-09 AT4G32840 765 / 0.0 phosphofructokinase 6 (.1) Lus10006032 [exp] 59 / 6e-09 AT4G26270 742 / 0.0 phosphofructokinase 3 (.1) Lus10011143 [exp] 57 / 4e-08 AT4G26270 837 / 0.0 phosphofructokinase 3 (.1) Lus10043044 [exp] 56 / 9e-08 AT4G26270 840 / 0.0 phosphofructokinase 3 (.1) Lus10031302 [exp] 49 / 3e-07 ND 40 / 5e-05 Lus10035001 [exp] 53 / 5e-07 AT4G26270 812 / 0.0 phosphofructokinase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G257800 [exp] 1058 / 0 AT1G76550 1065 / 0.0 Phosphofructokinase family protein (.1) Potri.002G003100 [exp] 1037 / 0 AT1G76550 1034 / 0.0 Phosphofructokinase family protein (.1) Potri.011G015900 [exp] 377 / 7e-124 AT1G12000 960 / 0.0 Phosphofructokinase family protein (.1) Potri.006G281900 [exp] 377 / 7e-124 AT1G12000 960 / 0.0 Phosphofructokinase family protein (.1) Potri.004G003800 [exp] 365 / 3e-119 AT1G12000 946 / 0.0 Phosphofructokinase family protein (.1) Potri.011G015600 [exp] 281 / 2e-89 AT1G12000 637 / 0.0 Phosphofructokinase family protein (.1) Potri.010G106950 [exp] 82 / 5e-19 AT1G20950 87 / 2e-21 Phosphofructokinase family protein (.1) Potri.006G024500 [exp] 73 / 3e-15 AT1G20950 67 / 5e-14 Phosphofructokinase family protein (.1) Potri.018G069200 [exp] 54 / 2e-07 AT4G26270 808 / 0.0 phosphofructokinase 3 (.1) Potri.006G152600 [exp] 54 / 3e-07 AT4G26270 827 / 0.0 phosphofructokinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0240 [flax] [poplar] PFK PF00365 [flax] [poplar] PFK Phosphofructokinase
Representative CDS sequence Show only first row Show all	>Lus10016047 pacid=23154381 polypeptide=Lus10016047 locus=Lus10016047.g ID=Lus10016047.BGIv1.0 annot-version=v1.0 ATGGATTCTGATTATGGCATTGCCAGAGAACTCTCCGCTCTTCAGAAAGCCCGATCTCTGTATCAGCCAGAGGTCCCTCCTTGCCTTCAGGGAACCACTG TCAGGGTGGAATTTGGTGATGGTACTGCCGCTGCTGACCCAGCTGGCGCTCACACTATTAGCCGCTTCTTCCCTCACACCTACGGCCAGCCTTTAGCCCA TTTCCTACGGGCTAATGCTAAAGTTCCCGATGCTCAGATAATCAGTGAACATCCGCCTTACAGGGTGGGACTAGTCTTTTGTGGAAGGCAGTCACCAGGT GGACATAACGTTGTCTGGGGCCTTCACAATGCTCTCAAAGCATATAATCCCAACAGTGTGTTGCTTGGATTTCTAGGAGGTTCGGAGGGATTGTTTGCCC AAAAAACTCTCGAAATTACTGATGACGTTCTTTCTACCTACAAAAATCAAGGTGGTTACGATTTGCTGGGAAGGACAAAAGATCAAATAAGAACTACTGA ACAGGTTAATGCTGCATTGGCTGCCTGCAAAGATCTTAAATTGGATAGCCTTGTCATCATCGGAGGGGTTACATCAAATACGGATGCTGCCCAGCTTGCA GAAACATTCGCAGCCTCGGGATGCCCAACTAAGGTGGTTGGTGTCCCTGTTACTTTGAATGGAGATCTCAAGAATCAATTTGTGGAAGCCAATGTTGGAT TTGATACAATATGCAAGGTTAATTCGCAGCTCATCAGCAATGTCTGTACTGATGCTCTTTCTGCTGAGAAGTACTATTATTTTATTCGCCTAATGGGCCG TAAAGCTTCTCATGTTGCTTTGGAGTGCACTCTGCAATCTCATCCCAATATGGTTGTTCTTGGGGAAGAAGTAGCAGCATCAAAACTTACTCTTTTTGAC ATAACTAAGCAGATCTGTGATGCTGTCCAAGCTAGAGCTGAAAAAGATAAGTACCATGGTGTTATTCTACTACCTGAGGGTCTGATTGAAAGCATTCCTG AGGTGTATGCATTATTGAAGGAAATTCATGGTTTGCTCAGGCAAGGCATTACAGCTGATAAAATTTCATCTCAACTTTCACCATGGGCATCCGCTCTATT TGAATTTTTGCCACCTTTTATCAAGAATCAGGTGCTTCTTCACCCAGAATCCGATGACTCTGCCCAACTATCTCAGATCGAGACTGAGAAATTATTGGCA CACCTTGTAGAGACAGAAATGAACAAGCGCCAGAAAGAAGGCACGTACAAGGGGAAGAAATTCAATGCCATCTGCCATTTTTTCGGTTATCAGGCTCGGG GATCTTTACCATCAAAGTTTGACTGCGACTATGCCTATGTTCTTGGCCATATCTGCTACCATATTCTTGCAGCTGGTTTGAATGGTTACATGGCAACTAT TAGTAATCTTAAGAATCCTGTGAACAAATGGCGTTGTGGTGCTGCCCCAATCACAGCAATGCTGACTGTGAAACGATGGGCTCAAAGTCCCGGTTCATCT TCGTTTGGAAAACCCGCTATTCATCCAGCTACTGTTGACTTGAACGGCAAAGCATATGAGTTGTTGAGACAAAATGCAGTGAGCTTTTTGCTGGATGATC TGTACAGAAACCCAGGACCTCTTCAGTTTGATGGTCCTGGAGCGGATGCCAAAGCTGTATCTCTGTGCGTAGAAGACCAAGATTACATGGGCAGGATCAA GGCACTGCAGGAATACTTGGACAAGGTTCGGACGATAGTGAAACCAGGATGTTCGCCTGAAGTTCTGAAGGCTGCACTGAGTGTAATGGCATCGGTGACG GAGGTTCTGTCCACCATGTCTTCAACTCCATCCCGTCCGACGGAATGA
AA sequence Show only first row Show all	>Lus10016047 pacid=23154381 polypeptide=Lus10016047 locus=Lus10016047.g ID=Lus10016047.BGIv1.0 annot-version=v1.0 MDSDYGIARELSALQKARSLYQPEVPPCLQGTTVRVEFGDGTAAADPAGAHTISRFFPHTYGQPLAHFLRANAKVPDAQIISEHPPYRVGLVFCGRQSPG GHNVVWGLHNALKAYNPNSVLLGFLGGSEGLFAQKTLEITDDVLSTYKNQGGYDLLGRTKDQIRTTEQVNAALAACKDLKLDSLVIIGGVTSNTDAAQLA ETFAASGCPTKVVGVPVTLNGDLKNQFVEANVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMGRKASHVALECTLQSHPNMVVLGEEVAASKLTLFD ITKQICDAVQARAEKDKYHGVILLPEGLIESIPEVYALLKEIHGLLRQGITADKISSQLSPWASALFEFLPPFIKNQVLLHPESDDSAQLSQIETEKLLA HLVETEMNKRQKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATISNLKNPVNKWRCGAAPITAMLTVKRWAQSPGSS SFGKPAIHPATVDLNGKAYELLRQNAVSFLLDDLYRNPGPLQFDGPGADAKAVSLCVEDQDYMGRIKALQEYLDKVRTIVKPGCSPEVLKAALSVMASVT EVLSTMSSTPSRPTE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20950			Phosphofructokinase family pro...		Lus10016047 [exp]	0	1
AT2G31390		STH	pfkB-like carbohydrate kinase ...		Lus10009526 [exp]	3.6	0.9180
AT2G40890		REF8, CYP98A3, ...	cytochrome P450, family 98, su...		Lus10020847 [exp]	3.7	0.9072
AT5G13420			Aldolase-type TIM barrel famil...		Lus10032613 [exp]	7.9	0.9023
AT5G17770		CBR1, ATCBR	NADH:cytochrome B5 reductase 1...		Lus10020310 [exp]	9.8	0.9015
AT5G24400		PGL3, EMB2024	6-PHOSPHOGLUCONOLACTONASE 3, E...		Lus10022352 [exp]	11.2	0.8953
AT2G22250		ATAAT, AAT, MEE...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10032388 [exp]	11.6	0.8783
AT4G32060			calcium-binding EF hand family...		Lus10005346 [exp]	12.0	0.8876
AT2G30340	AS2	LBD13	LOB domain-containing protein ...		Lus10009930 [exp]	13.0	0.8711
AT4G28190	ULT	ULT1	ULTRAPETALA1, Developmental re...		Lus10018560 [exp]	13.7	0.8654
AT4G34200		EDA9	embryo sac development arrest ...		Lus10027868 [exp]	15.2	0.8819

Compare expression of checked genes

Lus10016047 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.