Plant FIBer expression Database

Lus10016049 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G21065 214 / 2e-70 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025171
[exp]
127 / 8e-34 AT1G76660 420 / 1e-141 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G001500
[exp]
216 / 2e-71 AT1G21065 265 / 5e-91 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF01894 UPF0047 Uncharacterised protein family UPF0047
Representative CDS sequence
>Lus10016049 pacid=23154412 polypeptide=Lus10016049 locus=Lus10016049.g ID=Lus10016049.BGIv1.0 annot-version=v1.0
ATGCAATCAGCTATCTCCGCCGCCGCCTCCTCAGCTCCCTTAAGATTCTCTTCAGCTGCTTCTAGACCCGATTCCATCTCCTCGCCCTTGGCTTTCCGTC
CTCGCCGGTCAGCACTACAAGTGAATTCACTCTACTCATCCACATCTTCGTCCTTGCACAGCAAACTTCAAAGCTCCTCCATGGCTGCTTCCCCAGCGAC
AATTCCCAAATGGGCCCAGAAGACCGTCACTCTTCCTCCACTGCGTCGCGGCTGTCATCTCGTTACCTCCAAGATATTGCAAGAGATTGAGCCTGATCTG
TTACAATTCAGCTGTGGCCTTGCTCATCTGTTTCTGCAGCACACGAGTGCTTCCCTTACGATCAATGAGAACTACGACTCTGATGTTAGGGCTGACATCG
AGACTTTCCTCAATGCCGTAGTCCCTGAGGGTAATTCCGCGCCTTGGAAACACACACTGGAAGGTGCAGATGACATGCCAGCACACGTTAAATCATCGAT
GTTTGGCTGCACTCTGACGATCCCAATTACCAACGGAAAACTCAATATGGGCACTTGGCAGGTTTGTGCTGATACTCGATTTCACCCTTTTCACGGGAAT
ATGGCTGTGCGAGCATCGCGACCATCCTACAGCAAGAAAGGTTGTGGTGACCCTTAA
AA sequence
>Lus10016049 pacid=23154412 polypeptide=Lus10016049 locus=Lus10016049.g ID=Lus10016049.BGIv1.0 annot-version=v1.0
MQSAISAAASSAPLRFSSAASRPDSISSPLAFRPRRSALQVNSLYSSTSSSLHSKLQSSSMAASPATIPKWAQKTVTLPPLRRGCHLVTSKILQEIEPDL
LQFSCGLAHLFLQHTSASLTINENYDSDVRADIETFLNAVVPEGNSAPWKHTLEGADDMPAHVKSSMFGCTLTIPITNGKLNMGTWQVCADTRFHPFHGN
MAVRASRPSYSKKGCGDP

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G21065 unknown protein Lus10016049
[exp]
0 1
AT5G23140 NCLPP7, NCLPP2,... nuclear-encoded CLP protease P... Lus10013434
[exp]
2.0 0.9198
AT2G35940 HD BLH1, EDA29 embryo sac development arrest ... Lus10021270
[exp]
3.0 0.9035
AT5G05280 RING/U-box superfamily protein... Lus10034228
[exp]
4.5 0.9067
AT1G77090 Mog1/PsbP/DUF1795-like photosy... Lus10018931
[exp]
5.0 0.9209
AT5G01550 LECRKA4.2 lectin receptor kinase a4.1 (.... Lus10022662
[exp]
7.9 0.8858
AT5G23140 NCLPP7, NCLPP2,... nuclear-encoded CLP protease P... Lus10040981
[exp]
8.1 0.9128
AT4G38225 unknown protein Lus10013843
[exp]
8.5 0.9100
AT5G48485 DIR1 DEFECTIVE IN INDUCED RESISTANC... Lus10039511
[exp]
9.2 0.9056
AT1G61930 Protein of unknown function, D... Lus10020047
[exp]
11.2 0.9045
AT2G27290 Protein of unknown function (D... Lus10005208
[exp]
12.6 0.9039

Lus10016049 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.