Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76660 397 / 4e-136 unknown protein AT5G52430 113 / 2e-27 hydroxyproline-rich glycoprotein family protein (.1) AT1G63720 85 / 8e-18 unknown protein AT4G25620 64 / 8e-11 hydroxyproline-rich glycoprotein family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025171 [exp] 780 / 0 AT1G76660 420 / 1e-141 unknown protein Lus10039253 [exp] 122 / 4e-30 AT5G52430 374 / 6e-125 hydroxyproline-rich glycoprotein family protein (.1) Lus10024642 [exp] 121 / 7e-30 AT5G52430 261 / 2e-82 hydroxyproline-rich glycoprotein family protein (.1) Lus10032276 [exp] 119 / 4e-29 AT5G52430 265 / 8e-84 hydroxyproline-rich glycoprotein family protein (.1) Lus10027498 [exp] 119 / 9e-29 AT5G52430 348 / 2e-113 hydroxyproline-rich glycoprotein family protein (.1) Lus10028779 [exp] 89 / 1e-18 AT5G52430 191 / 6e-54 hydroxyproline-rich glycoprotein family protein (.1) Lus10017503 [exp] 88 / 2e-18 AT5G52430 183 / 5e-51 hydroxyproline-rich glycoprotein family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G001100 [exp] 501 / 4e-176 AT1G76660 487 / 1e-170 unknown protein Potri.005G260000 [exp] 486 / 1e-170 AT1G76660 453 / 7e-158 unknown protein Potri.001G102200 [exp] 127 / 2e-32 AT5G52430 232 / 2e-71 hydroxyproline-rich glycoprotein family protein (.1) Potri.012G144200 [exp] 118 / 8e-29 AT4G25620 382 / 2e-128 hydroxyproline-rich glycoprotein family protein (.1) Potri.003G129400 [exp] 116 / 2e-28 AT5G52430 193 / 1e-56 hydroxyproline-rich glycoprotein family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016050 pacid=23154443 polypeptide=Lus10016050 locus=Lus10016050.g ID=Lus10016050.BGIv1.0 annot-version=v1.0 ATGGGGTCGGAGCAGCGTAGATTACCTGAACCAGAACAGCGAAAGAGATGGGGAGGGTGCTTAGGAGCACTGTCTTGTTTCGGCGCGCAGAAAGGTGGGA AACGTATTGTCCCTGCATCTCGAACTATTGATGGAAATGCTTCAGCTGCACAGCCAAACGGACCACAAGCAGCTGGGATGACCAACCAAGCTACAACACT AGCTCCTTCTCTTCTTGCTCCACCTTCTTCACCAGCTTCGTTTTCAAACTCTGCTCTCCCTTCTACTGCTCAGTCTCCCAGCTGCTTCCTCTCAGTGTCT GCAAACTCACCCGGCGGCCCTTCCTCAAGAATGTTCGCTACTGGGCCTTATGCCCATGAAACACAACTGGTTTCACCCCCAGTTTTCTCAACATTTACAA CCGAGCCGTCCACTGCCCCTCTTACTCCTCCGCCTGAGTTGGCTCACTTGACTACACCTTCCTCCCCGGACGTACCTTTTGCTCAATTCCTCACGTCCTC TGCACGTCTCAAAAGCTCCGAAAAGGGTAGTTATATCGCTGGGAATGATAGTTTGTCCTCATCATTCCCCGAACGGGAGTTCCCTCCTCAGTGGGATCCT TCTGTTTCCCCTCGAAATGGAAACTGCTCCAGGACTGATTCCGGCAGGCTTTATGAGCATGATGCTAATTCTTCTCCCTCCATGGCAACCCGGGAGTCGA ACTTCTTCTGTCCTGCCACATTTGCACGGTTCTACCTGGATCATAATCCGCCTTTTCCTCACACTGCTGGGAGGTTGAGTGTCTCTAAAGATTCGGACGT CTATCCTGCTGCTGGGAACGGGCATCAGAACAGAAACAACAAGAGTCCTAAGCAGGATGTTGAAGAAATAGAAGCTTACAGAGCATCTTTTGGGTTCAGT GCTGATGAAATTATAACTACTACTCAGTACGTGGAGATATCTGATGTTCATGATGACTCCTTTGTAATTACTCCGCTTGCTTCAAGCACAGATGACACAG GATATCGCCCAGAAGCTGAGTCAGAGAGCGAAAACCAAAGATTGTTGGGAAAGCAACGAAACTCGTCGGGACATGAGTATCCGAAGTTGAAATCTGATGT ACATACTGGGGAAGGCTGTGAAGCTTTAGTCCCTTCCGATAGATACAGAGGGAGGAAGGTAGGAAATAGCCCCGGTACAAGAACACCACCCAGTGACAAC GAGATATTCTCTCAATCGAAAGGCAGCAGGAAATATAATATGGGTCAGTCGATCTCAGACGCTGAAATCGACTATAGGAGGGTAAGGAGCTCAAGAGAAG GCAGATGA
AA sequence Show only first row Show all	>Lus10016050 pacid=23154443 polypeptide=Lus10016050 locus=Lus10016050.g ID=Lus10016050.BGIv1.0 annot-version=v1.0 MGSEQRRLPEPEQRKRWGGCLGALSCFGAQKGGKRIVPASRTIDGNASAAQPNGPQAAGMTNQATTLAPSLLAPPSSPASFSNSALPSTAQSPSCFLSVS ANSPGGPSSRMFATGPYAHETQLVSPPVFSTFTTEPSTAPLTPPPELAHLTTPSSPDVPFAQFLTSSARLKSSEKGSYIAGNDSLSSSFPEREFPPQWDP SVSPRNGNCSRTDSGRLYEHDANSSPSMATRESNFFCPATFARFYLDHNPPFPHTAGRLSVSKDSDVYPAAGNGHQNRNNKSPKQDVEEIEAYRASFGFS ADEIITTTQYVEISDVHDDSFVITPLASSTDDTGYRPEAESESENQRLLGKQRNSSGHEYPKLKSDVHTGEGCEALVPSDRYRGRKVGNSPGTRTPPSDN EIFSQSKGSRKYNMGQSISDAEIDYRRVRSSREGR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76660			unknown protein		Lus10016050 [exp]	0	1
AT5G41315	bHLH	MYC6.2, GL3	GLABROUS 3, GLABRA 3, basic he...		Lus10032267 [exp]	1.7	0.9112
AT4G13640	GARP	UNE16	unfertilized embryo sac 16, Ho...		Lus10016676 [exp]	4.0	0.8972
AT1G62050			Ankyrin repeat family protein ...		Lus10002942 [exp]	5.5	0.8919
AT2G30933			Carbohydrate-binding X8 domain...		Lus10001516 [exp]	7.3	0.8646
AT1G62360	HD	WAM1, WAM, SHL,...	WALDMEISTER 1, WALDMEISTER, SH...		Lus10030003 [exp]	7.7	0.8879
AT5G60200	DOF	TMO6, AtDof5,3	TARGET OF MONOPTEROS 6 (.1)		Lus10036132 [exp]	8.5	0.8615
AT5G62740		AtHIR4, ATHIR1	hypersensitive induced reactio...		Lus10007268 [exp]	8.5	0.8758
AT2G39870			unknown protein		Lus10040247 [exp]	9.4	0.8882
AT1G62360	HD	WAM1, WAM, SHL,...	WALDMEISTER 1, WALDMEISTER, SH...		Lus10035319 [exp]	11.2	0.8753
AT3G11590			unknown protein		Lus10017001 [exp]	12.1	0.8444

Compare expression of checked genes

Lus10016050 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.