Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42400 363 / 4e-104 SDG25, ATXR7 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) AT5G19850 292 / 1e-88 alpha/beta-Hydrolases superfamily protein (.1) AT1G05830 148 / 1e-35 SDG30, ATX2 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) AT2G31650 145 / 7e-35 SDG27, TRX1, ATX1 SET DOMAIN PROTEIN 27, homologue of trithorax (.1) AT4G27910 127 / 3e-29 SDG16, ATX4 SET domain protein 16 (.1) AT5G53430 122 / 6e-28 SET29, ATX5, SDG29 SET domain group 29 (.1) AT3G61740 120 / 3e-27 SDG14, ATX3 SET domain protein 14 (.1.2) AT4G30860 108 / 5e-24 SDG4, ASHR3 ASH1-related 3, SET domain group 4 (.1) AT1G76710 106 / 2e-23 ASHH1 ,SDG26 ASH1-RELATED PROTEIN 1, ASH1 RELATED PROTEIN 1, SET domain group 26 (.1.2) AT2G44150 94 / 3e-20 SDG7, ASHH3 SET DOMAIN-CONTAINING PROTEIN 7, histone-lysine N-methyltransferase ASHH3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025172 [exp] 2157 / 0 AT5G42400 501 / 6e-165 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Lus10026725 [exp] 152 / 8e-37 AT1G05830 1272 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Lus10025508 [exp] 151 / 1e-36 AT1G05830 1256 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Lus10012626 [exp] 130 / 3e-30 AT3G61740 1077 / 0.0 SET domain protein 14 (.1.2) Lus10010121 [exp] 130 / 4e-30 AT3G61740 1008 / 0.0 SET domain protein 14 (.1.2) Lus10004012 [exp] 129 / 4e-30 AT3G61740 424 / 2e-136 SET domain protein 14 (.1.2) Lus10005007 [exp] 121 / 2e-27 AT4G27910 611 / 0.0 SET domain protein 16 (.1) Lus10030262 [exp] 118 / 2e-26 AT3G61740 742 / 0.0 SET domain protein 14 (.1.2) Lus10016600 [exp] 104 / 6e-23 AT1G76710 600 / 0.0 ASH1-RELATED PROTEIN 1, ASH1 RELATED PROTEIN 1, SET domain group 26 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G260100 [exp] 847 / 0 AT5G42400 397 / 5e-117 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Potri.002G001000 [exp] 825 / 0 AT5G42400 385 / 3e-112 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Potri.003G219700 [exp] 302 / 2e-91 AT5G19850 504 / 6e-180 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G232800 [exp] 151 / 1e-36 AT1G05830 1261 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Potri.014G146300 [exp] 151 / 1e-36 AT1G05830 1273 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Potri.015G014300 [exp] 124 / 2e-28 AT5G53430 1322 / 0.0 SET domain group 29 (.1) Potri.014G098400 [exp] 123 / 5e-28 AT3G61740 1120 / 0.0 SET domain protein 14 (.1.2) Potri.012G013900 [exp] 123 / 6e-28 AT5G53430 1423 / 0.0 SET domain group 29 (.1) Potri.002G170600 [exp] 121 / 2e-27 AT3G61740 1140 / 0.0 SET domain protein 14 (.1.2) Potri.018G023000 [exp] 119 / 1e-26 AT1G05830 160 / 2e-39 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00856 [flax] [poplar] SET SET domain
Representative CDS sequence Show only first row Show all	>Lus10016051 pacid=23154414 polypeptide=Lus10016051 locus=Lus10016051.g ID=Lus10016051.BGIv1.0 annot-version=v1.0 ATGCAGTTGAACCCAAGAGAATGCCAGATCAAAGGTTTTACTATTTTGCGTACAATTCAGGTGCCTTCACTACAGTCACGTCACTTTATATTTTGTTGCA ATTTGCTCGAAGAAACTAACTCAAGTTCAGTATTGGAGATGGATCACGAATTGAATGGACACGCCAGTGATGTTCCTGAGGCTTCAGATAATGCTGGGTC CAGTAGTTCTCTCTATCATCTACCTGTATTAGTGAATGGATGGATGTATGTTAATGAGCACGGCCAAATGTGTGGTCCTTATATTGATTCTCAGCTGCAC GAAGGTCTCTTATCTGGTTTTCTGCCTGGGGAACTTCAAGTGTTTCCTGTAGTAAACCAAAGTATAGCAAATCCTGTTCCTTTGAAGTACTTCCAACAGT TTCCGGATCATGTCAAATCAGGCTTTATGTACCTCAGTTCTGCCAACTCTGAAACACTTTTGCCTATGCCTGATTCCAGCTTGACACCTCATCAACCAGG AGTGAGTGTTCAGAGTGCATCGTTGGCTTCTGCCTTTGGCCAGCAAATGCTTGTTTCTGGAGAGGCTATTCAAGTAGAATTGTCAGATGATGATTCTTGT TGGTTATTTGTGGAGGAGGAGGGAAAGAAAAACGGGCCTTATAGTCTTATGGAGCTTTATTCTTGGCTTTGCTATGGATATCTTCGGGATACATCAACGA TGCATCATATGCATAAAGATTACGGGCCCATCCCGTTGCTGTCTCTTGTGAATGAATGGAGAGCATCAAAGGTCAAATTAACATCTGTAGCACATGCGAC ATGCAAAATTACTTCTCCAAAGGGCTTAACATCAGTAGTATCTGACGAAATTTCCCTTGAGTTGCACTCTTTGATTGTGAAAGCAGCTCGGAGAGTCGTG CTACATGAAATTATTAGCAATGTTATTTCAGCAGAAAGACATCCAAAGCTAGATAATCAAACTGCTTTAACTCGCTTCCCTGAAGGTGGAATGCAGTCTG GATTTGCTGGTGAGAAGGTAAAACATGCTGTTTCTGGGTTTGATGCTGGGGCTTGCAGCGATGTAGCATCAGGAGCTCATGCTGCTTCAATGCAGTTTCC CGGAAACAAAAAATCTATTGGCGACATAGATAGCTTCTGGGTTTCTTATAAAGTTATTTGTAGATCTCTTTTTAGCCATTGCATGGAAGATCTTTGGAAT GCTGTTTTTCGCGATCCAGTAGTAAATTATTCAACTTCCTGGAGGAAAAGGAAAATTTGGTTTGGTCCTTCCCAGATTGGATCTCCTGATTGTGGGAAAT ATGACAAGTTTCAAGCATCTACAACGCATTTTGTATCCCCTGAGGAGTCTGTTGGTTGTAATGGCAACTCGACCCCTGGGTTTGAGCTTGACAGAACTGA AACAGATAATCAAGTAGGATCAACTGAAACAACTTTGCCCATTCTTAAGCCATTAGAAGAGACTATCCCATTATCCAAGGACTGCGACCATGATGACATG AATAGTGTCGTGGAGAGTATAGGAAGTGAACTTTATGAGTCTGCTAAGGCTTGCTTGGCTGAGTTTGCTGGAATTCTTATAAAAAAGGAAGTCATAAGGG TAGCTGATATTGGAGAGGAGGACAACATTTCTGATATCAGTGGTTGTCACACATTCTCTAATTCAGTAGTGCCTGAAGAACGGAGTGAGTCCATTGGGAT TGCCCTTGACAATCTTACAAGTTCATCGCTTGCCATTGCTAACCAGCTTGATGTGAAAACCAAATCCAGTTTTCTTGCAAGTGCTTTTGGGAAGATACAC TTAAGTAATGTTGTTCTCCATGATGTGGATGTTGCTTGCCAACCGTCACCACCTGGGTCTGACGATGGTGTTACCACTCTCTTGCCACCCTCACGTGAAG TCCATTTACCAACATCCAATGAGCATCATTCTATGATTAAGCAATACATTGCCTTAGCATTATGCAGGCAGAAGTTGCATGATAGTTCTGTGGGAGAGTG GAAAGCTTGGGTATTTTCCAATCTTCTGAAGCAGGGTCTTCGATCATCTCCAGTTTTGGGGAAACAGTGTAAATTTGACAGTGAAAAGGATGAAGTGGAC AGACAAAGGCAGCAATCACTGAAGGTGGGGATATCAGATCCGATGGGACGTTGTCCAGTTACTGGTAACTACACGTACTTTCGAAAGAAGAAATCGGCTC GGACAAAGTTAGCATCATCTTCGCAGTTGGTGCCTCCTGTTGCTTCCGAAACGCAGAATCAGCTGATGGAATCATCTAGAAAGCACGTTTTGCTCCAAGA CTCTGCTAAGGATGCAGAAGCTGAAATGGGTGTTACCAACCTCACTAAACGCCAGAAGCTGTCTCTTAGTTCTAACTTGAAAATCATTGGAAAAAGTGGT CAGCCGTCTCAACATTCAATGACTAAGAAGGCCAGTCGAAGCAGAATGAAGAAAGTCGTAAAGGACATTCCAGGTGACGAGGTTGCATATAATGCTGTAA ACCCCCCGAGGAGTATTGGAGACGGCAATGTTGATGAGGAGGCCATCAATGGTAGTACCTGTACTGCTGGGGTCAAGGTCTCACCTACACTTGACAATCT TAAGAAGAAACGGACTTCTACTACTAAACAATCGGAACTGAAAAGGAAGCATTTGTCAGATGTCGGTGGTTCACCGTTGCATACAAGTAAGGTCTTAAAA CTAGAAAACGTCAGTGACAAGCAAGTTATTAGACGCATTGCATTGAAGAACAAAAAGTCCAGTAAGGTCCGGTTGTCTAAAACCTGTCCAAGTTCAGAAG GCTGTGCACGCACTTCAATTAATGGCTGGGAATGGCACTTATGGTCACTGAATGCAAGCCCGCCTGAAAGAGCTCGTGTTAGGGGACAGTTCTTTTATTC CAAATGTTCAAGTTCTGAGATTTCTGCATCACTGTTCACAAGTAGAGGTCTTTCTGCAAGAACAAATAGAGCAAAGGTCCGGAATCTTCTTGCTGCTGCT GAAGGTGCTGACCTTTTGAAAGCCACGCAGTTGAAGGCAAGGAAAAAACGATTGCGTTTTCAACGCAGTAAGATACATGATTGGGGTCTTGTTGCGCTGG AACCAATTGAGGCAGAGGATTTTGTGATTGAATATGTTGGTGAACTGATTCGTCCTCGAATATCTGATATACGTGAAGTACTGTATGAGAAGATGGGAAT TGGCAGCAGCTATCTCTTTAGGCTTGATGATGGATATGTGGTAGATGCTACTAAGCGTGGTGGGATTGCAAGATTTATAAATCATTCTTGCGAGCCGAAC TGTTACACCAAGGTTATAAGTGTTGAAGGCCAGAAGAAAATATTTATATATGCAAAGCGATGGATAAAGGCTGGTGAAGAAATCACTTATAATTATAAAT TCCCTTTGGAGGAGGAAAAAATCCCTTGCAACTGTGGTTCTCGGAAGTTCATGAAACAATGGCATCACAGGATGGTGGACAACGTTGGTCACGGTGATCT TTTGTTGAGTTCTTTATCCTACTCTTTCGGAGATACGTTGCTGAGTAATGTGCATATTGTTGTGGATCTCAGTCCGTTGAAAAATTGCTTGGTTGGTAGA AACTGGCTTGTTGGACTTCAGGCAGCAGTTATGGAACCTCTGAGATGTAAGGGAATTGTCTTGTTGAACATATCCTTGCGGATGCTTCATATCAAGAAAC AGCCATGGTTTGGAAAACCATTCATCAGATCCTTTCAGAACATACTTAGGAATACTACACTGGGCAAGTCCTTCTTCAACGCAGTTGCGAAACCCGAGTC CGTGAAAATTATTTTGCGCCAGTGTTACCACGATACCTCCCAGGTGACGGATGAACTCATTGAGAATATCCTTCAACCAGGGCTCGAGCCTGGTGCTGCA GATGTATTCCTTGAGTTCATTTGTTACTCGGACGGCCCTCTTCCCGAGGAGCTACTGCCTCAAGTGAAGTTTGGCAGATGGGGTGACAAGGATCCATGGG AACCGATCGAACAGGGAAGAGCATATGGGAATTTTGATACGGTAGAGGAGTTTGTCGTGCTTCCTGATGTTGGTCACTGCCCTCAGGATGAAGCGCCTCA TCTCGTGAATCCACTGGTGGAATCGTTTGTGGCTCGTCACTCTAGCTCCAGTTAG
AA sequence Show only first row Show all	>Lus10016051 pacid=23154414 polypeptide=Lus10016051 locus=Lus10016051.g ID=Lus10016051.BGIv1.0 annot-version=v1.0 MQLNPRECQIKGFTILRTIQVPSLQSRHFIFCCNLLEETNSSSVLEMDHELNGHASDVPEASDNAGSSSSLYHLPVLVNGWMYVNEHGQMCGPYIDSQLH EGLLSGFLPGELQVFPVVNQSIANPVPLKYFQQFPDHVKSGFMYLSSANSETLLPMPDSSLTPHQPGVSVQSASLASAFGQQMLVSGEAIQVELSDDDSC WLFVEEEGKKNGPYSLMELYSWLCYGYLRDTSTMHHMHKDYGPIPLLSLVNEWRASKVKLTSVAHATCKITSPKGLTSVVSDEISLELHSLIVKAARRVV LHEIISNVISAERHPKLDNQTALTRFPEGGMQSGFAGEKVKHAVSGFDAGACSDVASGAHAASMQFPGNKKSIGDIDSFWVSYKVICRSLFSHCMEDLWN AVFRDPVVNYSTSWRKRKIWFGPSQIGSPDCGKYDKFQASTTHFVSPEESVGCNGNSTPGFELDRTETDNQVGSTETTLPILKPLEETIPLSKDCDHDDM NSVVESIGSELYESAKACLAEFAGILIKKEVIRVADIGEEDNISDISGCHTFSNSVVPEERSESIGIALDNLTSSSLAIANQLDVKTKSSFLASAFGKIH LSNVVLHDVDVACQPSPPGSDDGVTTLLPPSREVHLPTSNEHHSMIKQYIALALCRQKLHDSSVGEWKAWVFSNLLKQGLRSSPVLGKQCKFDSEKDEVD RQRQQSLKVGISDPMGRCPVTGNYTYFRKKKSARTKLASSSQLVPPVASETQNQLMESSRKHVLLQDSAKDAEAEMGVTNLTKRQKLSLSSNLKIIGKSG QPSQHSMTKKASRSRMKKVVKDIPGDEVAYNAVNPPRSIGDGNVDEEAINGSTCTAGVKVSPTLDNLKKKRTSTTKQSELKRKHLSDVGGSPLHTSKVLK LENVSDKQVIRRIALKNKKSSKVRLSKTCPSSEGCARTSINGWEWHLWSLNASPPERARVRGQFFYSKCSSSEISASLFTSRGLSARTNRAKVRNLLAAA EGADLLKATQLKARKKRLRFQRSKIHDWGLVALEPIEAEDFVIEYVGELIRPRISDIREVLYEKMGIGSSYLFRLDDGYVVDATKRGGIARFINHSCEPN CYTKVISVEGQKKIFIYAKRWIKAGEEITYNYKFPLEEEKIPCNCGSRKFMKQWHHRMVDNVGHGDLLLSSLSYSFGDTLLSNVHIVVDLSPLKNCLVGR NWLVGLQAAVMEPLRCKGIVLLNISLRMLHIKKQPWFGKPFIRSFQNILRNTTLGKSFFNAVAKPESVKIILRQCYHDTSQVTDELIENILQPGLEPGAA DVFLEFICYSDGPLPEELLPQVKFGRWGDKDPWEPIEQGRAYGNFDTVEEFVVLPDVGHCPQDEAPHLVNPLVESFVARHSSSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42400		SDG25, ATXR7	ARABIDOPSIS TRITHORAX-RELATED7...		Lus10016051 [exp]	0	1
AT1G67140		SWEETIE	SWEETIE, HEAT repeat-containin...		Lus10033549 [exp]	2.0	0.9229
AT1G67140		SWEETIE	SWEETIE, HEAT repeat-containin...		Lus10017588 [exp]	3.9	0.9282
AT5G42400		SDG25, ATXR7	ARABIDOPSIS TRITHORAX-RELATED7...		Lus10025172 [exp]	6.3	0.8578
AT3G04160			unknown protein		Lus10021982 [exp]	6.3	0.8680
AT3G16785		PLDZ1, PLDZETA1...	PHOSPHOLIPASE D ZETA1, PHOSPHO...		Lus10037708 [exp]	13.0	0.8630
AT2G36480			ENTH/VHS family protein (.1.2....		Lus10027715 [exp]	17.4	0.8582
AT3G27325			hydrolases, acting on ester bo...		Lus10014564 [exp]	18.0	0.8685
AT3G10380		SEC8, ATSEC8	subunit of exocyst complex 8 (...		Lus10038694 [exp]	18.3	0.8790
AT3G43300		BEN1, ATMIN7	BFA-VISUALIZED ENDOCYTIC TRAFF...		Lus10009803 [exp]	19.4	0.8851
AT1G17720		ATBBETA, ATB BE...	Protein phosphatase 2A, regula...		Lus10012083 [exp]	20.8	0.8489

Compare expression of checked genes

Lus10016051 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.