Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13600 582 / 0 calmodulin-binding family protein (.1) AT3G58480 502 / 2e-173 calmodulin-binding family protein (.1) AT2G26190 414 / 3e-139 calmodulin-binding family protein (.1) AT4G33050 407 / 3e-137 EDA39 embryo sac development arrest 39, calmodulin-binding family protein (.1.2.3.4) AT3G52870 398 / 3e-134 IQ calmodulin-binding motif family protein (.1) AT5G57010 386 / 3e-129 calmodulin-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025173 [exp] 1031 / 0 AT3G13600 575 / 0.0 calmodulin-binding family protein (.1) Lus10039178 [exp] 743 / 0 AT3G13600 697 / 0.0 calmodulin-binding family protein (.1) Lus10013759 [exp] 732 / 0 AT3G58480 690 / 0.0 calmodulin-binding family protein (.1) Lus10003257 [exp] 424 / 7e-145 AT3G52870 576 / 0.0 IQ calmodulin-binding motif family protein (.1) Lus10029324 [exp] 422 / 1e-143 AT3G58480 472 / 6e-163 calmodulin-binding family protein (.1) Lus10016219 [exp] 426 / 2e-143 AT3G58480 569 / 0.0 calmodulin-binding family protein (.1) Lus10035595 [exp] 422 / 4e-143 AT3G52870 575 / 0.0 IQ calmodulin-binding motif family protein (.1) Lus10013526 [exp] 405 / 1e-135 AT5G57010 581 / 0.0 calmodulin-binding family protein (.1) Lus10029323 [exp] 77 / 6e-17 AT3G58480 84 / 6e-20 calmodulin-binding family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G218800 [exp] 682 / 0 AT3G13600 734 / 0.0 calmodulin-binding family protein (.1) Potri.001G006200 [exp] 667 / 0 AT3G13600 697 / 0.0 calmodulin-binding family protein (.1) Potri.006G197500 [exp] 554 / 0 AT3G58480 588 / 0.0 calmodulin-binding family protein (.1) Potri.016G063000 [exp] 525 / 0 AT3G58480 587 / 0.0 calmodulin-binding family protein (.1) Potri.018G061901 [exp] 504 / 2e-174 AT4G33050 601 / 0.0 embryo sac development arrest 39, calmodulin-binding family protein (.1.2.3.4) Potri.006G226400 [exp] 482 / 4e-166 AT4G33050 598 / 0.0 embryo sac development arrest 39, calmodulin-binding family protein (.1.2.3.4) Potri.006G147900 [exp] 458 / 2e-156 AT2G26190 513 / 2e-178 calmodulin-binding family protein (.1) Potri.001G005600 [exp] 433 / 3e-149 AT3G13600 431 / 4e-148 calmodulin-binding family protein (.1) Potri.006G114700 [exp] 419 / 2e-142 AT3G52870 561 / 0.0 IQ calmodulin-binding motif family protein (.1) Potri.006G226500 [exp] 382 / 1e-129 AT4G33050 433 / 9e-151 embryo sac development arrest 39, calmodulin-binding family protein (.1.2.3.4)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016052 pacid=23154346 polypeptide=Lus10016052 locus=Lus10016052.g ID=Lus10016052.BGIv1.0 annot-version=v1.0 ATGGGAGTTCCCTTTTCCTGCCCATTGAGTGATTCCAACGAAATCGAAAATGTGCTCGAACAATCTGTCCTCGTCAAATCCATCAGCTTCGGCCGCGATG CCGGAGCAGTCAGGAGTCCCGTCCGTTCCGTCAGTTTCGGGAGGTCAGATTTGGAGCCCGTTATCTCCTCGTTTTCACCTTCCGGTGAAATGGTGGTCGA GAGATCTGTCAGCTTGAAAGGAGTCGAATTAGAGAAGATGATCAAAACGACGTCGTTCGACCACCTCATTCGTGAAAATGGAGACAAAGATGATTCATCA TTTGCAAACAAGGGCGGCGGCAACCCGAAGCAGGACGAAGCTGCTGTGAAATTGCAGAAGGTTTACAAGAGCTTCAGGACCAGGAGGAAGCTTGCTGATT GTGCTGTTCTTGTTGAGCAGAGCTGGTGGAAGCTATTGGATTTTGCGGAGCTAAAGCGCAGTTCCGTCTCGTTCTTTGACATTGAGAAGCATGAGACTGC AATTTCGCGGTGGTCGAGAGCTAGAACCAGAGCTGCTAAGGTCGGGAAAGGGTTGTTGAAGAATGATAAAGCTCGAAAGCTGGCTCTCCAGCATTGGCTT GAAGCGATTGATCCAAGGCATCGATATGGTCATAACCTTCACTTCTATTATGATAATTGGCTTCATTCCAAGAGTAGACAGCCTTTCTTTTACTGGCTGG ACATAGGTGAAGGAAAGGAAGTGAACCTCTTTGATGAATGCCCAAGGTCCAAGCTTCAACAGCAGTGCATCAAGTATCTTGGTCCGATGGAAAGGAAGGC ATATGAAGTTGTGGTGGAGGATGGGAAGTTGATATACAAGCAAAGTGGGGAGCTTCTCAACACAAGTGGAGATTGCAAATGGATATTTGTACTGAGCACA TCCCAGTCACTGTACGTGGGGCAGAAGAAGAAAGGCACATTTCAGCACTCCAGCTTTTTGGCCGGAGGAGTCGCAACTGCTGCTGGTAGGTTGATTTCAG ATGATGGGATTCTGAAAGCAGTTTGGCCTCACAGCGGCCATTATCGTCCTACCGAAGAGAACTTCAGGGACTTCCTCTCCTTCCTCACCGAAAATCATGT CGATATCACTGATGTTAAGACTGCTCCTGTAGAGGAAGAAGGCTCACTTGCTAAACAGAGAAGCAGTGGACATCTGCGAACTAGCTGCGAGGAAGACGAT GACTCGATCGAAACAGTGGACAAGCTACACGAGGGAGGTTGCATCTCAACCTGCAGGAAGCTGACGAATCTCGAAATTCCAAAGAGGGTCGATCTGTTTG ATTGGAATAACGTTTCCAATGCTGCGGAAGATGACTATGAAGAAATGGAGAATATTCCTGAACAAGCAATCTTGGAAAGAATCAACTCAAAGAAAGGAAC AGAATCATCCTATCAACTCGGAAGGCAGCTGTCCAGTAAATGGACAACCGGAGCTGGACCCCGAATCGGGTGCGTGAGGGACTACCCTTCGGAGCTCCAG TTCCGAGCCTTGGAGCAAGTCAACTTGTCTCCACGAATCAGTCCTTCAAGCCGGGGATTAATATCCCCGCCAGTTCGGTCCAATCGTAGCTTGCCCTTTT ACAGAACACAAATCTCGTCGCCATTGTCGATCTCCAAGACCCTGCACGGCTAG
AA sequence Show only first row Show all	>Lus10016052 pacid=23154346 polypeptide=Lus10016052 locus=Lus10016052.g ID=Lus10016052.BGIv1.0 annot-version=v1.0 MGVPFSCPLSDSNEIENVLEQSVLVKSISFGRDAGAVRSPVRSVSFGRSDLEPVISSFSPSGEMVVERSVSLKGVELEKMIKTTSFDHLIRENGDKDDSS FANKGGGNPKQDEAAVKLQKVYKSFRTRRKLADCAVLVEQSWWKLLDFAELKRSSVSFFDIEKHETAISRWSRARTRAAKVGKGLLKNDKARKLALQHWL EAIDPRHRYGHNLHFYYDNWLHSKSRQPFFYWLDIGEGKEVNLFDECPRSKLQQQCIKYLGPMERKAYEVVVEDGKLIYKQSGELLNTSGDCKWIFVLST SQSLYVGQKKKGTFQHSSFLAGGVATAAGRLISDDGILKAVWPHSGHYRPTEENFRDFLSFLTENHVDITDVKTAPVEEEGSLAKQRSSGHLRTSCEEDD DSIETVDKLHEGGCISTCRKLTNLEIPKRVDLFDWNNVSNAAEDDYEEMENIPEQAILERINSKKGTESSYQLGRQLSSKWTTGAGPRIGCVRDYPSELQ FRALEQVNLSPRISPSSRGLISPPVRSNRSLPFYRTQISSPLSISKTLHG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13600			calmodulin-binding family prot...		Lus10016052 [exp]	0	1
AT4G24290			MAC/Perforin domain-containing...		Lus10015324 [exp]	1.0	0.8671
AT3G13600			calmodulin-binding family prot...		Lus10025173 [exp]	1.7	0.7972
AT3G17980		AtC2	Arabidopsis thaliana C2 domain...		Lus10009684 [exp]	2.8	0.7973
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10035704 [exp]	3.5	0.7785
AT2G36430			Plant protein of unknown funct...		Lus10027720 [exp]	4.5	0.7815
AT3G17980		AtC2	Arabidopsis thaliana C2 domain...		Lus10009053 [exp]	5.0	0.7808
AT4G12010			Disease resistance protein (TI...		Lus10016029 [exp]	8.4	0.7570
AT1G54215			proline-rich family protein (....		Lus10015652 [exp]	12.0	0.7408
AT3G11570		TBL8	TRICHOME BIREFRINGENCE-LIKE 8 ...		Lus10021328 [exp]	15.1	0.7366
AT5G23750			Remorin family protein (.1.2)		Lus10024514 [exp]	15.8	0.7070

Compare expression of checked genes

Lus10016052 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.