Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G04235 207 / 4e-54 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025175 [exp] 2433 / 0 AT2G04235 213 / 8e-56 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G315950 [exp] 382 / 3e-111 AT2G04235 255 / 5e-69 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016054 pacid=23154369 polypeptide=Lus10016054 locus=Lus10016054.g ID=Lus10016054.BGIv1.0 annot-version=v1.0 ATGGCGTCGAATCCTCGAACTATTGAAGCACTGTGCAACTCCGGGACCGATGAGGAGACTGTTGCGTTCCGGAAGAAGCGATTGCGCCGCGTCAGCTTCG CCGATGTCGAGATCACTTCCGTCCACGTTTTCGACCGCGATGAGGATTTGGAGACTCCTCCGGCCGACGCTTTGACCAAGAACCAGACCCCGGAAGAGGC TCACGGGCCGCGGAATGAAGTGTTAGGGTTTTTCAAGGGGCTTGCAGATGGTGACGACTTGGTAGAGACTTCTTTCAATGGAGACGAAGGCGACGATGAA GAGGAGGATGCATGTGCTAGCAATTCGTTTTTGCGGCCGTTTGAATCTCCGGGGAGTAGCGTTCCTGGTTCTGCTACTTCAAATGACGGAGACGAGTTCT TCGGTCCTGTTTCTGCTAATTTCATTAGACCTAGTCGGTTGTCAGATTCTGGTGCTTCAAATGATAATCATGAAGTAACCATGGACTCCACAGCATTCTC CATGCATTTCCGCAGTCTAATTAGATCAGAATCAGGTGACCTTAGGACACCTACTGACGTTGGATTTGGCTCTAGGGAGCAAACCCCTTCCAGCATGAAA ACACCTTCTGATCCTGAGAGTCGTATGACACTTACAAAGGCCACGCAGCTACAACTGTTTTCTAATCCCGAGGATAAGTCTACTGGTTGTAAATATTCCG ATGCCATGAGTCTTGTTGGCGAAAATGTGCCTAGTTATGATTATGCGAAGCTGTCTCCAAATTTGGAAGCTATTTTAGTGGAAGGCAGCAAAGAGTTGCT CTGTGTCCCCGTCCCTGATTGTACCAGTTCAAATATCTTGAAGAAGAACGAGAGTCCTTCGAAGTTTGAGAATGGAAATAGACATGTAAATCAAGATGGT TATGGGGATAAGGCACTAGTAAAAGTCTGCGCCCTTGATGAGTCAGCTCAGATAGAGTCCACTGGTTTGTCAGGGGCTGATGAGGCTCATGGTGTTTCTG CAGCCAGCCATGATAACCAGAGTAATGGTTTTCTCTCGCCAAGTAGAAATGATTGCTTTCCAACTGATTTATCTAGTCACGAACCAGTTCAGAATCTCAT TCCCTTGACCGAGCTAAACACACCGGATCAACAGCAGCAGGAGAACAAATGCTTCACTATTGCTGTGAGTACACCAGGTATATATGCTGAGTCCCCTGGT GTCTCAAGTAAAACGAGTAATGTCCTTCAGGTTGAGTCTGTAAAAACTCTTAAAGAAGGTACACTGAATGGTACTTCTCCAGAAGATAAAAAAGGCAATC ACTATGGCATTAGAACTAATGAGGAAGACTGTGGATCCTTGTCAACTGGGTTGGCATCCTCGCTTTCAGTTAAACAGCAGCATATGTTCAATTATGATGC TAAATCATTTAGCACAATGTCTTATGTAACTCCTTCACCTAAACAATCAGGGGCGTTTTTAATAAAGGAGGACGAAAGAAATGCTGAAATTATCTCATCT ATCTGCCGAAGTAGTTCTCGGTTGAATGCGACACTTGAAAAGTCAAAACTCCTGTTATCTGGGTTAAGCTCATCTATTCATGCTAGGGTGTCCCCTCTGA AAGAGAGTAGCAATACTGGTACAGGTGTTCCTGTAGCCAACTTAGAAGAACACTTCTCTGCTGTTGATACCGGTAGCATCCATGATCAGAGTGCAAGTTA CAGGCGGAATGATTTATCTGGATCACTTACACGTATTGATAATTTTAGGGAACTGGAAGGGATTGCTTGTCTTGCTGAAAATGAAGAATGTCTAGTTAAC CTGTCACCGTCCAGCGTTTTTACGGAAAAGCCTATTCAGCCAGTGTCAGAACCATCTGGAGCCTTACCACCTAAGCTCAAAATTGATCATGAAAGTGATG CCAAATCAATTGATGCACCTGATAGGTTTGCTTCTCCTCCAACAAAGAGGCCAGCTCAAGAGTTGTCATTTCAAGATAATTCTAGCAGTCTGCCTAGTCA TTTGAAGCAACAGCTCACCGACCTTGCTACTATTGACTTGGATCAAGATGCGGATTTAATGGGTGATGCTGCTAGAAATTCTCATACCACTGGAAGTGGT TTCAAATTGGAATCCTGGTTTAATGAAAGGAGTGCAAACTCCAGGTCGCCTATTCTTGCAATTCATAACTTGGATGACTTCTCTCAAATGAAAACAGGAA GCGACAAGGACCAACAAGTTGACCAGGTTAACCTAGAAGATGTATCTGTCAGTGCTGCTAGTATGCAAGTTCTTGCTAGTGGGATTGCTTTGAGTAGTCA TCAAGGAACTCCTAATGGAATTGGCCTCATTGCCGCTTCCAAGCAATCGAAAGTGCTTATGGAATGGTCTGAAGCTTCACCTAATGCCAGCAGATATATA AATGAGCCATCAAGAATAAAGAGTCCTTGCAAAGAAGCACTGACCACGAGCCAAGCTAGGGAAGAACCAGAGATGATTCTGTGTACGGATCCTGAGTCTA ATGGGGGCAAAATTAATGAAAGACATGCTGAAGTACAGAATTCACGGAGTTGTTCTCCAAGAAAAAGAAAATGTGAAATAGAATCTGAGGATGCAGGTAG AAGTAGCAGGATCAAGTTGGATGGGATGGCATCTCCGAATTGCAACACCGATGGACTCAGCAAAGGCAACAAGCCATTCCAAAGTTCACATAGTCCAGTT GTTGCAAGTGACATTGATAGCTCTTATATATGTGAACAAAGAAACGAGGAAGAACTGGAAGGGGGTAGAAATAACACATGCATGGTTGGAAGTCCTGACA TTCAAGCAACCAATGGACCTAATCTGGAAGTCAAGCTGGATCTTGCTAATGGAAGTAGCGAAGTTGGGATGATTGGGGGTGACAGAACAGTGACGCACTG GAGTGATGTTTCACAGAAACTTTCTTCAGACACAAGAGACTTGATTTCTCCATCTGTTGATTTTCTCAACATAAAATCAATTCATAGGATCCAAGATATT TTGGATCATCTACAGAAATTAAAGACTCGTGGGATTTTCTTTTTGCAAATGCAACAGCATAGTCTTGTGAACTCTGATAAAGTCTCTAGCCTAAATGCTA TTCTCCTGTGGCAGAAATTATGCGATGAAACAAGCAAAAGAATGCCGCGCGGAACAGCTGAAATGAGAAGTTTGATTTGCAAGTTGGTCTTTGAAAAGGC AAGAGTGAAACTACAAACTATCGAGCACCAGCAGCTTCTGAAAAGAAGGAAGATACTGAGAATTGCAGTTCAAGAGTCGCAGATGCTAAAATCAGCTAAA GGTTTGTGTCTGCCGGTGCCTAGTGAAGTCAACCCTCATGCTGGAGAGAGTTGTCAGAATAATTTTCACAGCAAAGACAAGGTCTCCCGTGAAAAGTTAG TTGCATCAAGGCATGAATTTGAAGCTTTACAGGAAAAGCTGAACAGTTTGACTCAGTATTTCCAGGATTACTGCAAAATTGGAAGAGAAACTAGTTCTAG TGAGATTATAACGATGCTTAATGACCAGTTGAACAAAAAAATCTCCTTTAGGTTCCTACATGAAGGGATTCAGTTATATGAAGTACGGGATTTGGAAAAC AGGAATGGTGTCATCTGCATTGTACTCAGCTACCTAGATTTTTTTACTCAAAGATTCACCATAAATACTGCTCAGATTCAGACCTTATCGCTTTCAATCA AGTTGAATGAGGCAAAGATCATTAAGAATTTCTCCAACATGGGTGCTTGTCCTGCTTTTGCTTTTGTTCTAAATGGTGACACCGCTAAGAATTATGCTGG CTCCACAAGTTTAGCACAGGAAACTAAAAGAACCAGTTCACTCTTGCGAAACTTGTTAGACGTTCTTCAAGAATTACAAACTGCAAGCATAGAGCTCGGA AATCTCGTTGAAACAAGCTTTTCTTCCTCAGTCGAGCGGCTCGATCTGCAGCTTTGTTTTGTTGACATCGGCAGTCATGCGACGATGAATCTCGGGTTTG ACATGACCTGCTTGAAACACGGAGTTTATCCTTGTGACATCCTCCCGAACAGAATACAAGTTTCGGGAGGTGGGAGACACAAGTCGTCGCATACAGAGTC ACTCCCAGCACAAGTGAAAGCATCAGTTGATGGACTTGGAGTCGGGTATTTGAGGATAATAAGGATTTGCAGGTGTATTTCTCAGATGATGAGCTTGTGA
AA sequence Show only first row Show all	>Lus10016054 pacid=23154369 polypeptide=Lus10016054 locus=Lus10016054.g ID=Lus10016054.BGIv1.0 annot-version=v1.0 MASNPRTIEALCNSGTDEETVAFRKKRLRRVSFADVEITSVHVFDRDEDLETPPADALTKNQTPEEAHGPRNEVLGFFKGLADGDDLVETSFNGDEGDDE EEDACASNSFLRPFESPGSSVPGSATSNDGDEFFGPVSANFIRPSRLSDSGASNDNHEVTMDSTAFSMHFRSLIRSESGDLRTPTDVGFGSREQTPSSMK TPSDPESRMTLTKATQLQLFSNPEDKSTGCKYSDAMSLVGENVPSYDYAKLSPNLEAILVEGSKELLCVPVPDCTSSNILKKNESPSKFENGNRHVNQDG YGDKALVKVCALDESAQIESTGLSGADEAHGVSAASHDNQSNGFLSPSRNDCFPTDLSSHEPVQNLIPLTELNTPDQQQQENKCFTIAVSTPGIYAESPG VSSKTSNVLQVESVKTLKEGTLNGTSPEDKKGNHYGIRTNEEDCGSLSTGLASSLSVKQQHMFNYDAKSFSTMSYVTPSPKQSGAFLIKEDERNAEIISS ICRSSSRLNATLEKSKLLLSGLSSSIHARVSPLKESSNTGTGVPVANLEEHFSAVDTGSIHDQSASYRRNDLSGSLTRIDNFRELEGIACLAENEECLVN LSPSSVFTEKPIQPVSEPSGALPPKLKIDHESDAKSIDAPDRFASPPTKRPAQELSFQDNSSSLPSHLKQQLTDLATIDLDQDADLMGDAARNSHTTGSG FKLESWFNERSANSRSPILAIHNLDDFSQMKTGSDKDQQVDQVNLEDVSVSAASMQVLASGIALSSHQGTPNGIGLIAASKQSKVLMEWSEASPNASRYI NEPSRIKSPCKEALTTSQAREEPEMILCTDPESNGGKINERHAEVQNSRSCSPRKRKCEIESEDAGRSSRIKLDGMASPNCNTDGLSKGNKPFQSSHSPV VASDIDSSYICEQRNEEELEGGRNNTCMVGSPDIQATNGPNLEVKLDLANGSSEVGMIGGDRTVTHWSDVSQKLSSDTRDLISPSVDFLNIKSIHRIQDI LDHLQKLKTRGIFFLQMQQHSLVNSDKVSSLNAILLWQKLCDETSKRMPRGTAEMRSLICKLVFEKARVKLQTIEHQQLLKRRKILRIAVQESQMLKSAK GLCLPVPSEVNPHAGESCQNNFHSKDKVSREKLVASRHEFEALQEKLNSLTQYFQDYCKIGRETSSSEIITMLNDQLNKKISFRFLHEGIQLYEVRDLEN RNGVICIVLSYLDFFTQRFTINTAQIQTLSLSIKLNEAKIIKNFSNMGACPAFAFVLNGDTAKNYAGSTSLAQETKRTSSLLRNLLDVLQELQTASIELG NLVETSFSSSVERLDLQLCFVDIGSHATMNLGFDMTCLKHGVYPCDILPNRIQVSGGGRHKSSHTESLPAQVKASVDGLGVGYLRIIRICRCISQMMSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G04235			unknown protein		Lus10016054 [exp]	0	1
AT2G07170			ARM repeat superfamily protein...		Lus10027590 [exp]	1.7	0.9796
AT3G10180			P-loop containing nucleoside t...		Lus10012103 [exp]	2.0	0.9715
AT5G40840		SYN2, ATRAD21.1	Sister chromatid cohesion 1 \(...		Lus10041587 [exp]	2.2	0.9680
AT5G63960		EMB2780	DNA binding;nucleotide binding...		Lus10033513 [exp]	3.0	0.9624
AT2G04235			unknown protein		Lus10025175 [exp]	4.0	0.9573
AT1G06220		GFA1, CLO, MEE5	MATERNAL EFFECT EMBRYO ARREST ...		Lus10034111 [exp]	4.7	0.9583
AT5G48600		ATSMC4, SMC4, A...	ARABIDOPSIS THALIANA STRUCTURA...		Lus10005240 [exp]	4.9	0.9707
AT1G59540		ZCF125	P-loop containing nucleoside t...		Lus10018661 [exp]	5.7	0.9698
AT2G26180		IQD6	IQ-domain 6 (.1)		Lus10014870 [exp]	6.0	0.9665
AT1G21730			P-loop containing nucleoside t...		Lus10025688 [exp]	6.2	0.9576

Compare expression of checked genes

Lus10016054 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.