Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66410 310 / 8e-108 PLP3B phosducin-like protein 3 homolog (.1) AT3G50960 298 / 2e-103 PLP3A phosducin-like protein 3 homolog (.1) AT2G18990 130 / 2e-37 TXND9 thioredoxin domain-containing protein 9 homolog (.1) AT3G25580 127 / 1e-36 Thioredoxin superfamily protein (.1) AT1G69880 41 / 0.0002 ATH8 thioredoxin H-type 8 (.1) AT5G14240 41 / 0.0003 Thioredoxin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025176 [exp] 375 / 8e-134 AT5G66410 362 / 1e-128 phosducin-like protein 3 homolog (.1) Lus10013889 [exp] 118 / 2e-33 AT3G25580 255 / 1e-87 Thioredoxin superfamily protein (.1) Lus10026602 [exp] 77 / 4e-18 AT3G25580 168 / 3e-54 Thioredoxin superfamily protein (.1) Lus10018383 [exp] 39 / 0.0008 AT1G11530 145 / 3e-46 C-terminal cysteine residue is changed to a serine 1 (.1) Lus10007630 [exp] 39 / 0.0008 AT1G11530 143 / 4e-45 C-terminal cysteine residue is changed to a serine 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G020400 [exp] 312 / 7e-109 AT5G66410 297 / 8e-103 phosducin-like protein 3 homolog (.1) Potri.001G297900 [exp] 120 / 8e-34 AT3G25580 286 / 3e-99 Thioredoxin superfamily protein (.1) Potri.009G092700 [exp] 119 / 3e-33 AT2G18990 290 / 2e-100 thioredoxin domain-containing protein 9 homolog (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF00085 [flax] [poplar] Thioredoxin Thioredoxin
Representative CDS sequence Show only first row Show all	>Lus10016055 pacid=23154410 polypeptide=Lus10016055 locus=Lus10016055.g ID=Lus10016055.BGIv1.0 annot-version=v1.0 ATGGATCCAGATGCGGTTAAATCTACTTTGTCCAATCTAGCTTTCGGAAATGTATTGGCGGCAGCTGCTCGCGATTACCAAAAGGAGTTGGTTGCTCAAG GCAAGGCTCAGTCATCAAGTTCTGCTAACCAAGAAGTAGACCTTGATGAGTTGATGGATGATCCAGAGTTAGAAAAACTACATGCTGACAGAATTGCCGC ATTGAAGAGAGAAGCTGAGAAACGAGAGTCCCTACAAAGACAAGGACATGGAGAGTACAGGGAGATAACGGAAGGGGATTTCTTAGGCGAAGTCACTAGG AGTGACAAAGTTATTTGCCACTTTTACCATAAAGAGTTCTACCGGTGCAAGATAGTAGATAAGCATTTGAAGGTTCTTGCTCCAAAGTATTTGGATACCA AGTTTGTCAGGCTGGATGCTGAGAATGCTCCCTTCTTTGTTGCCAAACTTGGGATCAAAACTCTGCCTTGCGTCATACTCTTTAGGAAAGGGATCGCATC AGATAGACTGGTTGGCTTCCAGGATCTGGGAGGCAAAGATGATTTCCCAACCAAGAAACTCGAAAACTACTTCTTAAAGAAAGGTATCATTAGTGAGAAG AAGAGCAACGAGGAAGACGAGGAGGAGTACGATGAAAGCCGTCGAAGGACAGTGAGGTCAACTGCCGAGGCTGATTCTGATTCGGATTAA
AA sequence Show only first row Show all	>Lus10016055 pacid=23154410 polypeptide=Lus10016055 locus=Lus10016055.g ID=Lus10016055.BGIv1.0 annot-version=v1.0 MDPDAVKSTLSNLAFGNVLAAAARDYQKELVAQGKAQSSSSANQEVDLDELMDDPELEKLHADRIAALKREAEKRESLQRQGHGEYREITEGDFLGEVTR SDKVICHFYHKEFYRCKIVDKHLKVLAPKYLDTKFVRLDAENAPFFVAKLGIKTLPCVILFRKGIASDRLVGFQDLGGKDDFPTKKLENYFLKKGIISEK KSNEEDEEEYDESRRRTVRSTAEADSDSD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66410		PLP3B	phosducin-like protein 3 homol...		Lus10016055 [exp]	0	1
AT5G13050		5-FCL	5-formyltetrahydrofolate cyclo...		Lus10042162 [exp]	2.4	0.9000
AT1G23750			Nucleic acid-binding, OB-fold-...		Lus10030617 [exp]	3.9	0.8683
AT5G13050		5-FCL	5-formyltetrahydrofolate cyclo...		Lus10004254 [exp]	4.2	0.8752
AT5G38790			unknown protein		Lus10034101 [exp]	10.8	0.8298
AT1G05010		ACO4, EAT1, EFE	ethylene forming enzyme, ethyl...		Lus10015153 [exp]	18.1	0.8569
AT5G23550			Got1/Sft2-like vescicle transp...		Lus10029537 [exp]	19.2	0.7868
AT1G75240	ZF_HD	ATHB33, ZHD5	zinc-finger homeodomain 5, hom...		Lus10031885 [exp]	19.2	0.8543
AT2G19880			Nucleotide-diphospho-sugar tra...		Lus10012951 [exp]	20.2	0.8535
AT2G39170			unknown protein		Lus10028816 [exp]	21.5	0.8188
AT2G37195			unknown protein		Lus10019937 [exp]	21.9	0.8494

Compare expression of checked genes

Lus10016055 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.