Plant FIBer expression Database

Lus10016056 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G12680 652 / 0 unknown protein
AT3G27390 372 / 5e-122 unknown protein
AT5G40640 371 / 1e-121 unknown protein
AT4G37030 347 / 3e-112 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025177
[exp]
923 / 0 AT4G12680 738 / 0.0 unknown protein
Lus10014575
[exp]
367 / 1e-118 AT5G40640 714 / 0.0 unknown protein
Lus10032110
[exp]
363 / 1e-118 AT3G27390 728 / 0.0 unknown protein
Lus10001003
[exp]
363 / 2e-118 AT4G37030 707 / 0.0 unknown protein
Lus10011021
[exp]
362 / 5e-118 AT4G37030 698 / 0.0 unknown protein
Lus10022317
[exp]
362 / 5e-118 AT3G27390 722 / 0.0 unknown protein
Lus10014881
[exp]
197 / 3e-57 AT3G27390 380 / 3e-128 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G170800
[exp]
686 / 0 AT4G12680 685 / 0.0 unknown protein
Potri.001G338900
[exp]
380 / 3e-125 AT5G40640 718 / 0.0 unknown protein
Potri.007G042400
[exp]
372 / 3e-122 AT4G37030 707 / 0.0 unknown protein
Potri.007G035400
[exp]
362 / 2e-118 AT4G12680 411 / 9e-138 unknown protein
PFAM info
Representative CDS sequence
>Lus10016056 pacid=23154349 polypeptide=Lus10016056 locus=Lus10016056.g ID=Lus10016056.BGIv1.0 annot-version=v1.0
ATGGACGTTCCTGTCGGATTCCTCTCTACCTTGTCGAGCTTCTTGTCATTCTTGCCCTTCTTCCTCTTGCTCTTCATCCTTGGCCTTCTCAAAGCTGTTG
TCATTGCTCCAATTTCCGTGGTGATCATACTATTTGGGAACTCGGCTGTGATTCTTGGCCTTTGGGTTGCTCATTTTCTGTGGACTTACTACTGTGTTAC
CAGAACAAAGAGGCTTGGCTTGGTATTGAAGATTGTGGTGATGTTGCTTTTACCAGTGCCTTTGGTCCTGTGGCCACCGGTAGGAATTGTTGGAAGCATT
TTGGGTGGAATTGGGTATGGCTTTTTTGCCCCTTTGCTTGCTACTTTTGAAGCTGTTGGGGAGAATGTCAAGGACAAGTTCTACCATTGTTTTTCTGATG
GTTGTGTCTCCACCATCAAATGCAGCTGCACAGTTGTTAGGGATTTTACTGATTTTTGCTTCCACTCCTACTTCTCTTTCATGGATGAACTGAGTGAGAA
AGTCCTTCCAGATGAAAAGCCTATGGATGTAAAGTTGACGAGATTGCCAAGTTGTTTCTTGGCAACCCTGATTGGTGTGCCGGTGGATATGCTTCTGATT
ACTGCCCTTGCCTTGTGGAAAAGCCCTTACATGCTCTTGCAAGGTTGGAAGAGGTTATTGGAAGATTTGATTGGTAGGGAAGGACCGTTCTTGGAGACAG
CGTGTGTTCCTTTTGCTGGCCTTGCAATTCTCTTGTGGCCTTTAGCTGTTGTGGCATCTGTTTTAGGAGCTTTTGTGTCCAGCTTCTTTCTGGGATTGTA
CAGTGGAGTTGTTGTCCATCAGGAAGATTCACTCCGGTCCGGATTGGCCTATATTGTTGCTGTGGTATCATTGTTCGATGAATATGTCAACGATCTACTT
TATTTGAGAGAAGGGTCATGCTTGCCTAGGCCAAAGTATCGGAAGAACCAGGCTCCAAAACCAGGTGATAAAGATGGGAGCTTGAATAGGAGAAGACAAA
ACTCACTTAATGGGAAACTCGTACCGGAAAGGACAAGATCATTGAAGCGCACCATTCAGGAATTTAAGGCAGTACAGATATGGGACTGGCTGTTCAAATC
CTGTGAAGTGAATGGAAGAATACTTCTGAGAGAAGGGCTGATAGATACCAAGGACGTTCAAGAATGCCTTGTCAAAGGCAATTGCAAGAAGTTGGGGATT
AAACTGCCTGCTTGGACCATATTACAGTGCTTGCTTACCTCCGCAAAGCAAGATTCATCTGGGTTGGTGATCTCGGACGAGGTTGAATTAACTGCTGCCA
ACGGGCCGAGGGATAAAGTTTTTGATTGGTTCATAGAACCATTGTTGATCATGAAAGAGCAGATCAGGAAGCTTGAACTGGACGAGCACGAGGAGATGAG
TCTGAGAAGGTTAGTAATGGTGAACAGGAATGAAAGACCCGAGGATTGGGATGAAGAAGGTTTCCCAAGTGGTGACCAAGTTAGAAGAGCTCAGTTACAA
GCCCTCATCAGAAGACTGCAAGGGATTGTAGCTTCGATGTCTCGTATTCCAACTTTCAGGCGGCGGTTCAAGAATCTGGTGAAGGTGTTATCAATTGAAG
CGATTCAGGTTGATGCTTCGACAAAGCAGATCGGAGGAGTGTTAAGCTCCATGTCCAAGGAAATAAGCAGCAGCAGAAGCCCTGTAGCAATCAAGGATGG
TATGGAGAAAGATAACAATGAAACTGATCAAACCAAGGATGGTATTGAGCTGTCCCTATGA
AA sequence
>Lus10016056 pacid=23154349 polypeptide=Lus10016056 locus=Lus10016056.g ID=Lus10016056.BGIv1.0 annot-version=v1.0
MDVPVGFLSTLSSFLSFLPFFLLLFILGLLKAVVIAPISVVIILFGNSAVILGLWVAHFLWTYYCVTRTKRLGLVLKIVVMLLLPVPLVLWPPVGIVGSI
LGGIGYGFFAPLLATFEAVGENVKDKFYHCFSDGCVSTIKCSCTVVRDFTDFCFHSYFSFMDELSEKVLPDEKPMDVKLTRLPSCFLATLIGVPVDMLLI
TALALWKSPYMLLQGWKRLLEDLIGREGPFLETACVPFAGLAILLWPLAVVASVLGAFVSSFFLGLYSGVVVHQEDSLRSGLAYIVAVVSLFDEYVNDLL
YLREGSCLPRPKYRKNQAPKPGDKDGSLNRRRQNSLNGKLVPERTRSLKRTIQEFKAVQIWDWLFKSCEVNGRILLREGLIDTKDVQECLVKGNCKKLGI
KLPAWTILQCLLTSAKQDSSGLVISDEVELTAANGPRDKVFDWFIEPLLIMKEQIRKLELDEHEEMSLRRLVMVNRNERPEDWDEEGFPSGDQVRRAQLQ
ALIRRLQGIVASMSRIPTFRRRFKNLVKVLSIEAIQVDASTKQIGGVLSSMSKEISSSRSPVAIKDGMEKDNNETDQTKDGIELSL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G12680 unknown protein Lus10016056
[exp]
0 1
AT3G13224 RNA-binding (RRM/RBD/RNP motif... Lus10032595
[exp]
4.2 0.7243
AT4G12680 unknown protein Lus10025177
[exp]
5.3 0.6709
AT3G18940 clast3-related (.1) Lus10021018
[exp]
10.6 0.6364
AT5G17690 AtLHP1, LHP1, T... TERMINAL FLOWER 2, LIKE HETERO... Lus10005669
[exp]
12.0 0.6676
AT3G26560 ATP-dependent RNA helicase, pu... Lus10036783
[exp]
14.0 0.6624
AT1G18260 HRD3A, EBS5 EMS-mutagenized bri1 suppresso... Lus10009046
[exp]
17.0 0.6899
AT3G51650 unknown protein Lus10009100
[exp]
21.3 0.6804
AT5G10080 Eukaryotic aspartyl protease f... Lus10019678
[exp]
21.5 0.6635
AT3G22960 PKP-ALPHA, PKP1 PLASTIDIAL PYRUVATE KINASE 1, ... Lus10012445
[exp]
22.3 0.6559
AT3G58110 unknown protein Lus10039903
[exp]
31.6 0.6526

Lus10016056 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.