Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03795 418 / 2e-144 Exostosin family protein (.1) AT3G07620 390 / 2e-134 Exostosin family protein (.1) AT5G25310 376 / 1e-128 Exostosin family protein (.1) AT5G33290 347 / 6e-117 XGD1 xylogalacturonan deficient 1 (.1) AT5G11130 346 / 1e-116 Exostosin family protein (.1) AT3G42180 330 / 1e-110 Exostosin family protein (.1.3) AT5G20260 312 / 9e-104 Exostosin family protein (.1) AT4G16745 305 / 7e-100 Exostosin family protein (.1.2) AT5G19670 301 / 7e-98 Exostosin family protein (.1) AT5G25820 296 / 3e-95 Exostosin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025178 [exp] 644 / 0 AT5G03795 471 / 5e-163 Exostosin family protein (.1) Lus10039142 [exp] 442 / 1e-153 AT5G03795 603 / 0.0 Exostosin family protein (.1) Lus10008751 [exp] 427 / 8e-148 AT3G07620 542 / 0.0 Exostosin family protein (.1) Lus10013790 [exp] 428 / 1e-147 AT5G03795 602 / 0.0 Exostosin family protein (.1) Lus10001917 [exp] 404 / 5e-139 AT5G25310 499 / 3e-174 Exostosin family protein (.1) Lus10005186 [exp] 358 / 2e-121 AT5G20260 513 / 3e-180 Exostosin family protein (.1) Lus10039980 [exp] 345 / 7e-115 AT5G20260 489 / 2e-169 Exostosin family protein (.1) Lus10027707 [exp] 332 / 3e-111 AT5G20260 526 / 0.0 Exostosin family protein (.1) Lus10001958 [exp] 316 / 3e-107 AT5G25310 372 / 1e-127 Exostosin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G171100 [exp] 531 / 0 AT5G03795 476 / 1e-164 Exostosin family protein (.1) Potri.006G118000 [exp] 433 / 1e-150 AT5G03795 608 / 0.0 Exostosin family protein (.1) Potri.014G170900 [exp] 428 / 4e-149 AT3G07620 572 / 0.0 Exostosin family protein (.1) Potri.018G025400 [exp] 371 / 2e-126 AT5G25310 518 / 0.0 Exostosin family protein (.1) Potri.006G064600 [exp] 355 / 2e-120 AT5G20260 543 / 0.0 Exostosin family protein (.1) Potri.T124507 [exp] 348 / 1e-117 AT3G42180 526 / 0.0 Exostosin family protein (.1.3) Potri.018G124832 [exp] 347 / 3e-117 AT3G42180 524 / 0.0 Exostosin family protein (.1.3) Potri.018G025200 [exp] 339 / 3e-114 AT5G11130 530 / 0.0 Exostosin family protein (.1) Potri.T124607 [exp] 335 / 8e-113 AT5G20260 545 / 0.0 Exostosin family protein (.1) Potri.018G124945 [exp] 335 / 2e-112 AT5G20260 548 / 0.0 Exostosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [flax] [poplar] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Lus10016058 pacid=23154459 polypeptide=Lus10016058 locus=Lus10016058.g ID=Lus10016058.BGIv1.0 annot-version=v1.0 ATGGAGAGGGTGTTCAAGATGTATGTCTACAAAGAAGGCGAACCTCCCATCTTCCACGACGGTCCTTGCAAGAGCATATATTCGTCCGAAGGGAGGTTTA TCCACGAGATGGAGAAGGGGCCCGATAGGAATTTGTATGTGACCGAGGATCCTGATGAGGCGCTTATGTACTTTCTCCCGTTTAGCGTTGTGAGGATGGT TCAGTACTTGTACGGGGAGGATGGATCTCGTGATACGGAAGGGATCGGGCGTGTTGTGGTGGACTACATCGATGTTGTTTCGGCTAAGTATCCATTCTGG AATCGGAGCCTCGGAGCTGACCATTTCATGCTCTCTTGCCATGATTGGGGGCCAAGAGCAACAAGGTACAACAAAGAGCTATACAGCAACTCCATAAGAG TCCTCTGCAACGCCAACACATCAGAAGGGTTCAACCCATCAAAGGATGCTTCCTTCCCGGAAATCCATCTCCGAACAGGGGAAATTACTGGCCTAATCGG CGGCCCATCGCCGTCTCAACGCTCAATCCTTGCATTCTTCGCCGGCCGCCTCCATGGCCATATAAGGAAGCTACTGCTAGACGAGTGGAAAGACAAATTA GACCAAGATGTCCAAGTATTCGACAGCCTCCCTCCCGGCGTATCCTACGAATCCAAGCTCCGTAACAGCAAGTTCTGCCTCTGCCCCAGCGGATACGAGG TAGCCAGTCCGAGAGTCGTCGAAGCGATCTACGCAGAATGTGTGCCGGTGCTGATCTCCGACGCATATGTGCCGCCGTTCAGCGACGTGCTAAACTGGAA GGCGTTCTCGGTGGAGATAGAAGTGAAGAATATCCATAGAATTAAGGAGATTTTGATGGGAATTTCTCAGGAACAGTATCTGACGATGCAGAGGAGTGTG AAGCAAGTTCAACGGCACTTCGTAGCTAACGGCCCTCCGAAGAGATATGACGTTTTTCACATGACAGTTCATTCCATTTGGCTTCGCCGTCTAAACATTC GGGTTCAGGATTCCGATCTTTAA
AA sequence Show only first row Show all	>Lus10016058 pacid=23154459 polypeptide=Lus10016058 locus=Lus10016058.g ID=Lus10016058.BGIv1.0 annot-version=v1.0 MERVFKMYVYKEGEPPIFHDGPCKSIYSSEGRFIHEMEKGPDRNLYVTEDPDEALMYFLPFSVVRMVQYLYGEDGSRDTEGIGRVVVDYIDVVSAKYPFW NRSLGADHFMLSCHDWGPRATRYNKELYSNSIRVLCNANTSEGFNPSKDASFPEIHLRTGEITGLIGGPSPSQRSILAFFAGRLHGHIRKLLLDEWKDKL DQDVQVFDSLPPGVSYESKLRNSKFCLCPSGYEVASPRVVEAIYAECVPVLISDAYVPPFSDVLNWKAFSVEIEVKNIHRIKEILMGISQEQYLTMQRSV KQVQRHFVANGPPKRYDVFHMTVHSIWLRRLNIRVQDSDL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03795			Exostosin family protein (.1)		Lus10016058 [exp]	0	1
AT1G79430	GARP	WDY, APL	WOODY, ALTERED PHLOEM DEVELOPM...		Lus10001844 [exp]	3.3	0.9460
AT3G55370	DOF	OBP3, AtDof3. 6	OBF-binding protein 3 (.1.2.3)		Lus10029458 [exp]	5.8	0.9102
AT4G24250		ATMLO13, MLO13	MILDEW RESISTANCE LOCUS O 13, ...		Lus10042397 [exp]	6.6	0.9437
AT2G27140			HSP20-like chaperones superfam...		Lus10008426 [exp]	9.8	0.9301
AT5G04890		RTM2	RESTRICTED TEV MOVEMENT 2, HSP...		Lus10008946 [exp]	11.0	0.9264
AT1G75260			oxidoreductases, acting on NAD...		Lus10033210 [exp]	11.5	0.9313
AT5G18970			AWPM-19-like family protein (....		Lus10001116 [exp]	11.8	0.9275
AT1G79430	GARP	WDY, APL	WOODY, ALTERED PHLOEM DEVELOPM...		Lus10001754 [exp]	14.4	0.9185
					Lus10016057 [exp]	15.3	0.8971
AT1G05610		APS2	ADP-glucose pyrophosphorylase ...		Lus10026213 [exp]	15.5	0.9053

Compare expression of checked genes

Lus10016058 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.