Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G04160 905 / 0 AIR3 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) AT5G59810 851 / 0 ATSBT5.4 Subtilase family protein (.1) AT5G67360 577 / 0 ARA12 Subtilase family protein (.1) AT5G45650 566 / 0 subtilase family protein (.1) AT3G14067 530 / 8e-178 Subtilase family protein (.1) AT4G34980 530 / 1e-177 SLP2 subtilisin-like serine protease 2 (.1) AT2G05920 525 / 5e-176 Subtilase family protein (.1) AT3G14240 518 / 3e-173 Subtilase family protein (.1) AT5G51750 512 / 1e-170 ATSBT1.3 subtilase 1.3 (.1) AT1G04110 499 / 2e-165 SDD1 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039086 [exp] 757 / 0 AT5G59810 850 / 0.0 Subtilase family protein (.1) Lus10039087 [exp] 745 / 0 AT2G04160 810 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Lus10038774 [exp] 737 / 0 AT5G59810 839 / 0.0 Subtilase family protein (.1) Lus10039085 [exp] 723 / 0 AT5G59810 827 / 0.0 Subtilase family protein (.1) Lus10023048 [exp] 719 / 0 AT5G59810 762 / 0.0 Subtilase family protein (.1) Lus10038772 [exp] 700 / 0 AT5G59810 815 / 0.0 Subtilase family protein (.1) Lus10006505 [exp] 697 / 0 AT2G04160 745 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Lus10014591 [exp] 674 / 0 AT2G04160 716 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Lus10032096 [exp] 603 / 0 AT1G20160 654 / 0.0 Subtilisin-like serine endopeptidase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G171600 [exp] 1070 / 0 AT2G04160 986 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.001G468800 [exp] 883 / 0 AT5G59810 939 / 0.0 Subtilase family protein (.1) Potri.011G165900 [exp] 860 / 0 AT2G04160 882 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.006G001600 [exp] 830 / 0 AT5G59810 970 / 0.0 Subtilase family protein (.1) Potri.011G050300 [exp] 748 / 0 AT2G04160 786 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.011G050000 [exp] 746 / 0 AT2G04160 806 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.001G469000 [exp] 744 / 0 AT5G59810 754 / 0.0 Subtilase family protein (.1) Potri.005G067200 [exp] 743 / 0 AT2G04160 786 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.001G468900 [exp] 742 / 0 AT5G59810 730 / 0.0 Subtilase family protein (.1) Potri.011G050100 [exp] 739 / 0 AT2G04160 784 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0570 [flax] [poplar] PPP-I PF05922 [flax] [poplar] Inhibitor_I9 Peptidase inhibitor I9 CL0570 [flax] [poplar] PF00082 [flax] [poplar] Peptidase_S8 Subtilase family CL0364 [flax] [poplar] Leu-IlvD PF02225 [flax] [poplar] PA PA domain
Representative CDS sequence Show only first row Show all	>Lus10016064 pacid=23154352 polypeptide=Lus10016064 locus=Lus10016064.g ID=Lus10016064.BGIv1.0 annot-version=v1.0 ATGGATATAAAAGGAAAGGCCACCCATTTCCCTGTTGAACCAAAACCAGTAGAGGTGGAAGAAGAACAAGTAAGAATGCAGCAGCAGAGTGCTACTCAGC CAACCATGAAGCTTCTTCTTCTTCTTCTTCTCCAATTCCCATCTTTGTTCCTTCTCGCTATTCTTCTTCTGCTCAAACCCACAGCTCATGCATCCACAAC TCTTTCATATGTAGTGTACATGGGAACTCATTCCCACGGTTCAGTTTTCAACTCCAGCCTCGTAGAGCAGTCCCATTTCGAGTTCCTTGGCTCATTCCTC GGCAGCCATGAAGAAGCTCGAGAGGCCATATTCTACTCTTACACAAGGCACATTAATGGCTTTGCTGCGAACTTGGACGAACAAGTTGCAGCTGAGATAT CCAAACATCCAAAGGTGGTGTCGGGGTTTCAGAACAGAGGAAGGAAGCTACACACGACACACTCATGGAATTTCCTTGGTTTGGAACAGAAGAACGGTTT GGTTAGCTCCGGTTCTATATGGAAGAAAGCCCGGTTCGGTGAAGATGTCATCATTGGAAACCTCGATACTGGAGTATGGCCAGAATCGAAAAGCTTTAGC GAAGAGGGGCAAGGGTTGGGACCGATTCCCTCAAAGTGGAAAGGAATTTGCCAAAACCACAGAGATTACGAGTTCCACTGCAACAGGAAGCTGATAGGAG CCAGGTACTTCAACAAAGGGTACCAATCAGTTGCAGGAAAGCTCAAAGCTTCCTTCTTTTCACCAAGGGACCATGAAGGGCATGGCTCCCATACCCTTTC AACTGCAGGAGGCAACTTTGTGAACGGAGCAAGTGTGTTCGGGTTCGGGAATGGGACTGCCAAAGGAGGCTCACCTAAGGCCAGGGTCGCGACTTATCGT GTATGCTACCCGCCTGTGAATGGGAGCGAATGCTTCGATGCAGACATCGTGGCAGCGTTCGACGCTGCGATTGCTGATGGTGTTGATGTGTTATCTGTCT CGCTTGGTGGGGAGCCAACTGCATTGTTTAATGACAGTGTAGCACTTGGCTCGTTCCATGCTATCCAGCATGGAATCTCTGTGGTTTGTTCTGGTGGTAA CTCTGGACCGGTCGACTCGACTGTCTCGAATGTCGCGCCTTGGGAGATCACGGTTGCTGCCAGCACTACTGATAGGGAGTTCCCTAGCTATGTTGTTCTA GGCAACCGCATGAGATACAAGGGAGAGAGTTTGTCACCTCAAGCCCTTCCAAAGAACAAGTTCTTCCCCATGATCAATGCTGCAGATGCAAAAGCAGCCA AAGCATCTGTTCAAGATGCCATGCTGTGCATGCCCGGCTCGCTGGATCGTAAGAAGGTAAAAGGGAAGATCTTGGTGTGCTTAAGAGGAATCACAGCAAG AGTTGATAAAGGCGAGCAAGCTGCTCTTGCTGGTGCAGTGGGAATGGTTCTTGTCAATGATTTCACCGCTGGAAATGAAGTCATTGCTGATGCTCACATC CTTCCTGCTTCCCATGTCAATTACCCCTCCGGTCTTGAAATCTTCAAGTACCTCAGTTCCACTAAACAGCCTGTTGCATATATCACACCATCAAGAACTC AAATAGGGCAAAAAACAGCACCTTCCATGGCAGCATTTTCATCCAAGGGACCAAACAAGGTTACTCCAGAGATCCTCAAGCCTGATATCACAGCACCAGG AGTTAGTGTCATTGCAGCCTACACAGAAGCACAAGGGCCGACCAATGCAGCGTTCGACACGAGGCGAGTTCAGTACAACTCGGTCTCGGGGACATCAATG TCTTGCCCTCATGTTTCAGGCATTGTTGGCCTCCTCAGAACTATGTACCCACATTGGAGCCCTGCTGCTATCAAGTCAGCAATCATGACCACTGCAAACA CAAGGAACAGCAACATGGAGCCAATCCAGAATGCATCCAACACAAGAGCAAATCCATTCAACTATGGAGCAGGACACATAAGGCCAAACAAGGCAATGGA TCCAGGCCTCATCTATGACTTAACCATCAAAGATTACCTCAGCTTCCTTTGTGCATTAGGCTACACCAAAAAACAGATTTCATCCTTCTCACAAGATGAT TCCTACAGATGTCCTTCCAAACACATCAGCCTCTCCAACTTCAACTACCCTTCCATAACCATTCCAAACTTCAACGGCTCGATGACCGTGACTCGAACCG TTAGGAACGTTGGCCCAGTACCGGCTACTTACAAGGCTCGAATGAAGAAGCCAACCGGGATCTCTGTATCTGTCGAGCCAGGGAGACTGGAGTTCCGAAA GGCTGGAGAAGAGAAGACCTTCAGAGTGGTTTTGAGTGGCAATGCTGCAGCCAAAGCAGCATCAAAGGATTATGCTTTTGGAGAGTTGGTGTGGACTGAT GGGAAGCGACAAGTGAAGAGTCCCATTGTACTGAAATGGTCAATTTAG
AA sequence Show only first row Show all	>Lus10016064 pacid=23154352 polypeptide=Lus10016064 locus=Lus10016064.g ID=Lus10016064.BGIv1.0 annot-version=v1.0 MDIKGKATHFPVEPKPVEVEEEQVRMQQQSATQPTMKLLLLLLLQFPSLFLLAILLLLKPTAHASTTLSYVVYMGTHSHGSVFNSSLVEQSHFEFLGSFL GSHEEAREAIFYSYTRHINGFAANLDEQVAAEISKHPKVVSGFQNRGRKLHTTHSWNFLGLEQKNGLVSSGSIWKKARFGEDVIIGNLDTGVWPESKSFS EEGQGLGPIPSKWKGICQNHRDYEFHCNRKLIGARYFNKGYQSVAGKLKASFFSPRDHEGHGSHTLSTAGGNFVNGASVFGFGNGTAKGGSPKARVATYR VCYPPVNGSECFDADIVAAFDAAIADGVDVLSVSLGGEPTALFNDSVALGSFHAIQHGISVVCSGGNSGPVDSTVSNVAPWEITVAASTTDREFPSYVVL GNRMRYKGESLSPQALPKNKFFPMINAADAKAAKASVQDAMLCMPGSLDRKKVKGKILVCLRGITARVDKGEQAALAGAVGMVLVNDFTAGNEVIADAHI LPASHVNYPSGLEIFKYLSSTKQPVAYITPSRTQIGQKTAPSMAAFSSKGPNKVTPEILKPDITAPGVSVIAAYTEAQGPTNAAFDTRRVQYNSVSGTSM SCPHVSGIVGLLRTMYPHWSPAAIKSAIMTTANTRNSNMEPIQNASNTRANPFNYGAGHIRPNKAMDPGLIYDLTIKDYLSFLCALGYTKKQISSFSQDD SYRCPSKHISLSNFNYPSITIPNFNGSMTVTRTVRNVGPVPATYKARMKKPTGISVSVEPGRLEFRKAGEEKTFRVVLSGNAAAKAASKDYAFGELVWTD GKRQVKSPIVLKWSI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G04160		AIR3	AUXIN-INDUCED IN ROOT CULTURES...		Lus10016064 [exp]	0	1
AT1G54790			GDSL-like Lipase/Acylhydrolase...		Lus10029639 [exp]	8.8	0.8414
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10036177 [exp]	22.8	0.8398
AT5G17820			Peroxidase superfamily protein...		Lus10018375 [exp]	25.6	0.8361
AT4G33110			S-adenosyl-L-methionine-depend...		Lus10022684 [exp]	38.6	0.8278
AT1G50430		ST7R, PA, LE, 7...	PARVA, LEPIDA, DWARF 5, DELTA5...		Lus10037309 [exp]	44.7	0.8108
AT2G28160	bHLH	ATFIT1, ATBHLH2...	ARABIDOPSIS FE-DEFICIENCY INDU...		Lus10016151 [exp]	52.0	0.8243
AT1G17710		AtPEPC1	Arabidopsis thaliana phosphoet...		Lus10015634 [exp]	54.4	0.8159
AT2G34790		MEE23, EDA28	MATERNAL EFFECT EMBRYO ARREST ...		Lus10036147 [exp]	58.2	0.7995
AT1G06980			unknown protein		Lus10026407 [exp]	61.5	0.8176
AT5G50390		EMB3141	EMBRYO DEFECTIVE 3141, Pentatr...		Lus10013389 [exp]	66.3	0.7955

Compare expression of checked genes

Lus10016064 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.