Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50660 387 / 8e-130 PSC1, CYP90B1, CLM, SNP2, DWF4, SAV1 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) AT5G14400 371 / 1e-125 CYP724A1 "cytochrome P450, family 724, subfamily A, polypeptide 1", cytochrome P450, family 724, subfamily A, polypeptide 1 (.1) AT5G05690 331 / 2e-108 CBB3, DWF3, CYP90A1, CYP90A, CPD DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) AT4G36380 291 / 2e-92 ROT3 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) AT1G73340 276 / 1e-86 Cytochrome P450 superfamily protein (.1) AT3G13730 266 / 2e-83 CYP90D1 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1) AT1G12740 261 / 1e-81 CYP87A2 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) AT5G38970 239 / 3e-73 ATBR6OX, CYP85A1, BR6OX1 brassinosteroid-6-oxidase 1 (.1.2.3) AT3G30180 238 / 7e-73 CYP85A2, BR6OX2 brassinosteroid-6-oxidase 2 (.1) AT4G19230 228 / 1e-68 CYP707A1 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025183 [exp] 501 / 1e-177 AT5G14400 265 / 7e-87 "cytochrome P450, family 724, subfamily A, polypeptide 1", cytochrome P450, family 724, subfamily A, polypeptide 1 (.1) Lus10003650 [exp] 410 / 3e-139 AT5G14400 353 / 3e-119 "cytochrome P450, family 724, subfamily A, polypeptide 1", cytochrome P450, family 724, subfamily A, polypeptide 1 (.1) Lus10024016 [exp] 349 / 7e-116 AT3G50660 643 / 0.0 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Lus10040193 [exp] 318 / 4e-103 AT5G05690 687 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Lus10014850 [exp] 302 / 4e-97 AT5G05690 679 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Lus10031295 [exp] 270 / 4e-84 AT1G73340 624 / 0.0 Cytochrome P450 superfamily protein (.1) Lus10028345 [exp] 268 / 1e-83 AT4G36380 652 / 0.0 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) Lus10031866 [exp] 268 / 1e-83 AT1G73340 624 / 0.0 Cytochrome P450 superfamily protein (.1) Lus10041794 [exp] 265 / 2e-82 AT4G36380 643 / 0.0 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G171700 [exp] 702 / 0 AT3G50660 408 / 1e-138 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Potri.001G341000 [exp] 489 / 4e-170 AT5G14400 424 / 6e-147 "cytochrome P450, family 724, subfamily A, polypeptide 1", cytochrome P450, family 724, subfamily A, polypeptide 1 (.1) Potri.007G026500 [exp] 406 / 1e-137 AT3G50660 757 / 0.0 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Potri.005G124000 [exp] 397 / 5e-134 AT3G50660 738 / 0.0 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Potri.010G189800 [exp] 322 / 7e-105 AT5G05690 717 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Potri.008G067500 [exp] 318 / 1e-103 AT5G05690 710 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Potri.007G018400 [exp] 302 / 5e-97 AT4G36380 626 / 0.0 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) Potri.001G200100 [exp] 285 / 2e-90 AT3G13730 663 / 0.0 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1) Potri.017G154600 [exp] 283 / 7e-90 AT1G73340 714 / 0.0 Cytochrome P450 superfamily protein (.1) Potri.003G038200 [exp] 281 / 6e-89 AT3G13730 662 / 0.0 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10016065 pacid=23154454 polypeptide=Lus10016065 locus=Lus10016065.g ID=Lus10016065.BGIv1.0 annot-version=v1.0 ATGGCTGGTGGTGGTGCATGGTTTTGGTACTCTTTGGGAACATTTGTCACCATCTCCATTTTCCCTGTCACAATTCCATGGCATTGGCCTGTAATTGTGA CATTCATGGCTTCTCTCTTTCTGGGTCTCATAATCTTGAATCATTACTTGCCTCTTTTCACTCCAAATCATCGTTACAACAACAACCTCCCCAAAGGCTC CTTCGGATTTCCTTTACTCGGTGAAACCCCTGCTTTCCTAAACCCTCATCCTGCCACTTCCATCGGAACTTTTCTTCATCACCATTGCTCCAGGTATGGG AAAGTGTTCAGGTCACATTTGTTCTTCTCCCCAGCAATTGTGTCCTGTGACGAGGAGCTCAACTACTTCATACTTCAGAACGAAGGCAAGCTGTTCGAAT GCAGCTACCCGAAACCGATCCATGGAATTCTCGGCAATGTGTCGATGCTGGTAGCTGTTGGTGACACTCACAAGAGGCTTAGGAATATGGCTTTATCTCT TGTCAATGTCACCAAATCCAAGCCTGAGTTTTTGCATGATGTGGAGATGTCTGCAACCAGGATCCTGAGATCTTGGCAGGGGAAGCGTCAGGTTCTGTTT TGTGAGGAATCCAGGAAGTTTACTTTCAATGTGATTGTCAAGCAAGTTCTGGGGTTGACACCTGAAGATCCTGTGACCACAAGGATTCTTGCGGATTTCT TGACTTTTATGAAGGGTCTCATTTCTCTTCCTATCTATGTTCCTGGAACTCCATATGCTAGAGCTGTTCAGGCTAGAAGGAGGATATCTTCTTCTGTCAA AGCAATTATAGAGGAAAGAAGGAGCAGAAGAAGAATCAAGGAAGGAGGAGGAGATGGTGCTGGGAAAGAAAAAGTGGATTTCCTTGAGATACTGATTGGT TTGGATGCCTTATCTGAAGATGAAAAAGTCAGTTTTGTGTTGGATTCTCTGTTGGGGGGATATGAAACTACTTCTCTCTTAATGGCCATGGTGGTACACT TCCTGGCTCATTCTCCCTCTGCACTTTCTCAACTCAAGTTGGAGCATGAGAAGATAAGAAGCAGGAAAGAGGAAGGGGAGCTATTGAGCTGGGAAGATTA CAAGAAGATGGCATTTACACAAAATGTGATCAATGAAGCACTGAGGTGTGGGAACATTGTCAAATTTGTGCACAGGAAGGCCTTGAAAGATGTAAAATTC AGAGATTACTTCATTCCATCTGGCTGGAAGGTTCTGCCTGTTTTTACTGCTGTTCATATGGATTCATCTTTACATCCAAATGCTCCTCACTTTGATCCCT GGAGGTGGGAGAAAGAAGATCAAACATGCAAGAAATTCACACCTTTTGGGGGAGGTTCAAGGTTCTGTCCTGGGTCTGAACTGGCTAGAGTTGAAGTTTC ATTTTTCCTCCACCACCTTGTACACAATTTCAGGTGGAGTAGTGAAGATTCAGATGGGCCACTGGCATTTCCTTATGTTGAATTTGACAAGGGCCTGCTG CTAAATTTGGAACATTGTACATCTCAACTGTGA
AA sequence Show only first row Show all	>Lus10016065 pacid=23154454 polypeptide=Lus10016065 locus=Lus10016065.g ID=Lus10016065.BGIv1.0 annot-version=v1.0 MAGGGAWFWYSLGTFVTISIFPVTIPWHWPVIVTFMASLFLGLIILNHYLPLFTPNHRYNNNLPKGSFGFPLLGETPAFLNPHPATSIGTFLHHHCSRYG KVFRSHLFFSPAIVSCDEELNYFILQNEGKLFECSYPKPIHGILGNVSMLVAVGDTHKRLRNMALSLVNVTKSKPEFLHDVEMSATRILRSWQGKRQVLF CEESRKFTFNVIVKQVLGLTPEDPVTTRILADFLTFMKGLISLPIYVPGTPYARAVQARRRISSSVKAIIEERRSRRRIKEGGGDGAGKEKVDFLEILIG LDALSEDEKVSFVLDSLLGGYETTSLLMAMVVHFLAHSPSALSQLKLEHEKIRSRKEEGELLSWEDYKKMAFTQNVINEALRCGNIVKFVHRKALKDVKF RDYFIPSGWKVLPVFTAVHMDSSLHPNAPHFDPWRWEKEDQTCKKFTPFGGGSRFCPGSELARVEVSFFLHHLVHNFRWSSEDSDGPLAFPYVEFDKGLL LNLEHCTSQL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50660		PSC1, CYP90B1, ...	SUPPRESSOR OF NPH4 2, SHADE AV...		Lus10016065 [exp]	0	1
AT5G51780	bHLH	bHLH036	basic helix-loop-helix (bHLH) ...		Lus10027395 [exp]	11.2	0.8917
AT2G38750		ANNAT4	annexin 4 (.1)		Lus10039551 [exp]	16.0	0.8930
AT1G64960		HEB1	hypersensitive to excess boron...		Lus10025197 [exp]	16.7	0.8893
AT4G39950		CYP79B2	"cytochrome P450, family 79, s...		Lus10031145 [exp]	28.9	0.8899
AT5G64440		ATFAAH	fatty acid amide hydrolase (.1...		Lus10020469 [exp]	30.1	0.8898
AT5G47540			Mo25 family protein (.1)		Lus10036523 [exp]	41.3	0.8863
					Lus10002921 [exp]	42.1	0.8785
AT1G70580		GGT2, AOAT2	GLUTAMATE:GLYOXYLATE AMINOTRAN...		Lus10006203 [exp]	43.6	0.8784
AT2G36270	bZIP	EEL, GIA1, ABI5	GROWTH-INSENSITIVITY TO ABA 1,...		Lus10021369 [exp]	49.5	0.8756
AT3G43860		ATGH9A4	glycosyl hydrolase 9A4 (.1)		Lus10038075 [exp]	51.2	0.8773

Compare expression of checked genes

Lus10016065 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.