Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17170 344 / 1e-121 ATRAB-B1B, AT-RAB2, AtRABB1c, AtRab2A ARABIDOPSIS RAB GTPASE HOMOLOG B1B, RAB GTPase homolog B1C (.1) AT4G35860 324 / 8e-114 ATGB2, AtRABB1b, Atrab2C GTP-binding 2 (.1.2) AT4G17160 297 / 4e-103 AtRab2B, AtRABB1a RAB GTPase homolog B1A (.1) AT4G39990 184 / 3e-58 ATGB3, AtRABA4b, AtRab11G ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A 4B, GTP-BINDING PROTEIN 3, RAB GTPase homolog A4B (.1) AT5G45750 182 / 8e-58 AtRABA1c RAB GTPase homolog A1C (.1) AT1G09630 182 / 8e-58 ATRAB-A2A, ATRAB11C, ATRABA2A ARABIDOPSIS RAB GTPASE A2A, RAB GTPase 11C (.1) AT3G46830 182 / 1e-57 ATRAB-A2C, AtRab11A, AtRABA2c ARABIDOPSIS RAB GTPASE HOMOLOG A2C, RAB GTPase homolog A2C (.1) AT5G59150 181 / 3e-57 ATRAB-A2D, AtRABA2d ARABIDOPSIS RAB GTPASE HOMOLOG A2D, RAB GTPase homolog A2D (.1) AT1G16920 181 / 3e-57 ATRABA4B, RAB11, ATRABA1B RAB GTPase homolog A1B (.1) AT3G12160 181 / 4e-57 AtRABA4d ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025184 [exp] 367 / 2e-130 AT4G17170 389 / 1e-139 ARABIDOPSIS RAB GTPASE HOMOLOG B1B, RAB GTPase homolog B1C (.1) Lus10038744 [exp] 341 / 2e-120 AT4G17170 434 / 2e-157 ARABIDOPSIS RAB GTPASE HOMOLOG B1B, RAB GTPase homolog B1C (.1) Lus10039114 [exp] 314 / 1e-109 AT4G17170 407 / 5e-147 ARABIDOPSIS RAB GTPASE HOMOLOG B1B, RAB GTPase homolog B1C (.1) Lus10025738 [exp] 182 / 2e-57 AT5G65270 404 / 4e-145 RAB GTPase homolog A4A (.1) Lus10035924 [exp] 182 / 2e-57 AT5G65270 404 / 3e-145 RAB GTPase homolog A4A (.1) Lus10023153 [exp] 181 / 3e-57 AT5G65270 396 / 3e-142 RAB GTPase homolog A4A (.1) Lus10000637 [exp] 181 / 3e-57 AT5G65270 395 / 8e-142 RAB GTPase homolog A4A (.1) Lus10029253 [exp] 181 / 4e-57 AT5G45750 393 / 4e-141 RAB GTPase homolog A1C (.1) Lus10012032 [exp] 181 / 4e-57 AT3G12160 379 / 1e-135 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G002200 [exp] 341 / 2e-120 AT4G17170 394 / 6e-142 ARABIDOPSIS RAB GTPASE HOMOLOG B1B, RAB GTPase homolog B1C (.1) Potri.009G159600 [exp] 330 / 3e-116 AT4G35860 412 / 7e-149 GTP-binding 2 (.1.2) Potri.010G197200 [exp] 186 / 6e-59 AT1G07410 370 / 3e-132 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) Potri.004G061000 [exp] 184 / 2e-58 AT4G18800 392 / 9e-141 RAB GTPase homolog A1D (.1) Potri.011G070300 [exp] 182 / 7e-58 AT5G45750 392 / 1e-140 RAB GTPase homolog A1C (.1) Potri.016G050400 [exp] 182 / 1e-57 AT3G12160 387 / 1e-138 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Potri.003G081800 [exp] 181 / 2e-57 AT1G02130 391 / 9e-141 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1) Potri.003G004100 [exp] 181 / 3e-57 AT1G09630 382 / 6e-137 ARABIDOPSIS RAB GTPASE A2A, RAB GTPase 11C (.1) Potri.007G096000 [exp] 181 / 6e-57 AT5G65270 404 / 2e-145 RAB GTPase homolog A4A (.1) Potri.016G000400 [exp] 180 / 7e-57 AT1G07410 380 / 4e-136 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00071 [flax] [poplar] Ras Ras family
Representative CDS sequence Show only first row Show all	>Lus10016066 pacid=23154432 polypeptide=Lus10016066 locus=Lus10016066.g ID=Lus10016066.BGIv1.0 annot-version=v1.0 ATGTCGTACGCTTATCTCTTCAAGTACATCATCATTGGTGATACAGGAGTTGGAAAATCATGCCTCCTTCTGCAGTTCACGGACAAGAGATTTCAGCCGG TCCATGACTTGACGATTGGCGTTGAATTTGGAGCTCGGATGATCAACATTCACACCAAGGCGATCAAGCTGCAAATATGGGACACGGCCGGTCAAGAGTC GTTCAGATCCATTACAAGGTCGTATTACCGAGGAGCTGCTGGTGCACTTCTAGTCTATGATATTACCAGGAGGGAGACATTCAATCACTTGACTAGCTGG CTGGAGGATGCAAGGCAGCATGCAAATTCCAACATGACAATCATGCTAATCGGCAACAAATGCGACCTTTCGCATAGAAGAGCCGTGAGTGCAGAGGAAG GCGAGCAATTTGCAAAGGAGAATGGACTAGTATTCATGGAGGCCTCTGCCAAAACCGCACAGAATGTCGAAGAGGTAATGTTATGGGCTGAAAAATCCTC TCTGAACATGGATCATCTTACCTTCTTATATGGCCGACCCTGCAAGCAGGCATTCATCAACACCGCAGGAAAAATCTACAAGAAGATTGAGGATGGTATT CTCGACATATCAAATGAGTCATATGGGATTAAGCTTGGTTATGGAGGACCGTCTGGACCGTCAACTGGTGCTGGCGCAGCAGCTCAAGGAGCTCCCTGCT GCGGTTGA
AA sequence Show only first row Show all	>Lus10016066 pacid=23154432 polypeptide=Lus10016066 locus=Lus10016066.g ID=Lus10016066.BGIv1.0 annot-version=v1.0 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIHTKAIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSW LEDARQHANSNMTIMLIGNKCDLSHRRAVSAEEGEQFAKENGLVFMEASAKTAQNVEEVMLWAEKSSLNMDHLTFLYGRPCKQAFINTAGKIYKKIEDGI LDISNESYGIKLGYGGPSGPSTGAGAAAQGAPCCG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17170		ATRAB-B1B, AT-R...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10016066 [exp]	0	1
AT5G62050		ATOXA1, OXA1AT,...	HOMOLOG OF YEAST OXIDASE ASSEM...		Lus10001639 [exp]	13.4	0.7858
AT1G25540		MED25, PFT1	PHYTOCHROME AND FLOWERING TIME...		Lus10034282 [exp]	33.1	0.7247
AT3G10550		MTM1, AtMTM1	Arabidopsis thaliana myotubula...		Lus10037915 [exp]	46.5	0.7139
AT4G33140			Haloacid dehalogenase-like hyd...		Lus10027652 [exp]	61.1	0.6551
AT5G64610		HAM1	histone acetyltransferase of t...		Lus10001302 [exp]	88.4	0.6949
AT5G25900		ATKO1, CYP701A3...	CYTOCHROME P450 701 A3, ARABID...		Lus10011667 [exp]	100.0	0.6798
AT3G19780			unknown protein		Lus10040970 [exp]	219.4	0.6469
AT4G02480			AAA-type ATPase family protein...		Lus10036347 [exp]	228.2	0.6482
AT5G19400		SMG7	Telomerase activating protein ...		Lus10009689 [exp]	264.3	0.6436

Compare expression of checked genes

Lus10016066 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.