Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39820 463 / 2e-163 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025185 [exp] 696 / 0 AT4G39820 464 / 6e-164 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G079300 [exp] 530 / 0 AT4G39820 467 / 6e-165 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016067 pacid=23154418 polypeptide=Lus10016067 locus=Lus10016067.g ID=Lus10016067.BGIv1.0 annot-version=v1.0 ATGGAGGAAGCTGACTCACTCCATTTGCAACCTGAAACTTCACCACCATCCAGTGATCCACTCTCCAACAAATTTTCATCCCTCAACGATCTAGCTCACG AGCTCGCATCTCTCCAAGACCTCGCCAACCGCGGTTCATGGCGATCAATACTCGATAAAGTTGCTCGAGCAAGATCACTCTCTCTTCTCACAATGCCACC CGCCCACCTCACCTATTTGGCATACAACGCCCTTGCTTTCATCAAGCTACGCCAGTACAAGGAAGCTCTCACCGAACTCGAATCAGTCGACGAGTTCGAT AGCCACCATTACCGGTACGAAACCTATCCAAAAATATACCCGGGCCGGTCAGGCTCCATGGTCCCTTTCTGTCTCCGGTGGCTTCTCGTATTGGTTCACA TGAAATTGGGGAATCGGCCAGACGGTCTGGACCGGTTGTACCTTCTGCTCGATTTCGTTCGTGGCAAGATGAACGAAAAGGAGGTAGCTTCGGCTTCGGC TTCACTCCAAGTGTGGAGAAAGAGGGAGGTTTTTGTTGTGAACAACATTGTTACTGAGCACATGAAGGGTAAGGAATTTGGTATCTGTTTGGATCTGATC AAGGGTCTTTTCGGTCAGGGAAGTTTGGATCCGCATCTATTGTCGAAGTTAGGGTACATACAAATGCAAATGGGGGATCTAGAGGGTGCTAATGGCTCAT TCGATAAAGTGGAGAATTTGTTGAATGATCGAAAGAGCGAGGATGATAATATCGTGGAGTTAAAGAACATGGTGAGCAGGAACAAAGCTTTGATGTACTT GGTGGATAAGGACTATGTGTCTGCAGTGAGGGAGTATGATGGATGTATCGAGCGAGATGCCATGGATGCAGTGGCGATCAACAACAAAGCGATTTGCTTG ATGTACTTGAGAGACTTGTCGGATTCGATCAAAGTGTTGGAGAATTCGCTCGAGAGGGTGCCGACGGTGGCCCTGAACGAGACGCTTGTGGTGAATTTGT GTAGCATGTATGAGTTGGCGTATGTTAATCATTCGGATGTGAAGCGGACGCTGAGCAATTGGATCTCGAAGGTCGCTCCTGATGATTTCGATTCTTCTTG TACTAGGATGTGA
AA sequence Show only first row Show all	>Lus10016067 pacid=23154418 polypeptide=Lus10016067 locus=Lus10016067.g ID=Lus10016067.BGIv1.0 annot-version=v1.0 MEEADSLHLQPETSPPSSDPLSNKFSSLNDLAHELASLQDLANRGSWRSILDKVARARSLSLLTMPPAHLTYLAYNALAFIKLRQYKEALTELESVDEFD SHHYRYETYPKIYPGRSGSMVPFCLRWLLVLVHMKLGNRPDGLDRLYLLLDFVRGKMNEKEVASASASLQVWRKREVFVVNNIVTEHMKGKEFGICLDLI KGLFGQGSLDPHLLSKLGYIQMQMGDLEGANGSFDKVENLLNDRKSEDDNIVELKNMVSRNKALMYLVDKDYVSAVREYDGCIERDAMDAVAINNKAICL MYLRDLSDSIKVLENSLERVPTVALNETLVVNLCSMYELAYVNHSDVKRTLSNWISKVAPDDFDSSCTRM

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39820			Tetratricopeptide repeat (TPR)...		Lus10016067 [exp]	0	1
AT1G29260		PEX7, ATPEX7	ARABIDOPSIS PEROXIN 7, peroxin...		Lus10007274 [exp]	1.4	0.9151
AT4G39820			Tetratricopeptide repeat (TPR)...		Lus10025185 [exp]	2.4	0.9012
AT3G08780			unknown protein		Lus10014237 [exp]	5.7	0.9006
AT5G41670			6-phosphogluconate dehydrogena...		Lus10032341 [exp]	7.1	0.9007
AT3G10410		CPY, SCPL49	CARBOXYPEPTIDASE Y, SERINE CAR...		Lus10038691 [exp]	9.5	0.8632
AT5G11770			NADH-ubiquinone oxidoreductase...		Lus10032155 [exp]	11.2	0.8857
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10009842 [exp]	11.6	0.9000
AT2G37110			PLAC8 family protein (.1)		Lus10019922 [exp]	13.2	0.8855
AT1G61040		VIP5	vernalization independence 5, ...		Lus10011205 [exp]	13.6	0.8459
AT1G53900			Eukaryotic translation initiat...		Lus10003938 [exp]	16.1	0.8784

Compare expression of checked genes

Lus10016067 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.