Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48310 1286 / 0 unknown protein AT4G24610 816 / 0 unknown protein AT5G65440 668 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025189 [exp] 2006 / 0 AT5G48310 1258 / 0.0 unknown protein Lus10000766 [exp] 848 / 0 AT4G24610 1499 / 0.0 unknown protein Lus10015962 [exp] 795 / 0 AT4G24610 1476 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G172000 [exp] 1590 / 0 AT5G48310 1350 / 0.0 unknown protein Potri.002G104100 [exp] 816 / 0 AT4G24610 1508 / 0.0 unknown protein Potri.004G118950 [exp] 41 / 0.0006 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016071 pacid=23154435 polypeptide=Lus10016071 locus=Lus10016071.g ID=Lus10016071.BGIv1.0 annot-version=v1.0 ATGTTCACCGAAGGCTTGGACGAATCCGCCATCAACTGGATCAACCAGGGACGGACAGTAGACGGATCACTGCAGCGAGTTAGGTCGCCGTTATCTCCAT TAACGGAGACGCGATCTCCGGTAGGGTTGTTTCCGAAGTCACCGGTCCCGAGGTCTCCGCATCTCTACTCTTCTGCTTCTTCCCAATTGCTGCCTCCTCT CAAGTTCAGCGTTTCTGGCCTCCTTACGCCTCGCACTTTGGTGCCCCCGAGTTTTAGCGACGAGCAAGATGACAGCGAGAGCGTCGGTTCCGTGTCAGAA TACACCGCCGGGAATTTCTCCGTTTACGGCGGCGAGGGGGAAGACGAGGAGGAGGAGGAAGTTGGTAACGTAGCTGACTTGGACTACTTGGAGAAGTCCG GGAGGCAGTGCTATGATGATGCAGACATTGTGTTTGTTGAAAGGCCTAAAAGAAAACTGAACCGAGGATTGTTGAAGGAGGACTTGAAAATAGAAGTGCC TGGTGGTGGTGGTAATGGCGGTGGGCTGAGAAGGTTTACTACAGATGGGGAATTGGGAGCCAGGAGACTTGCTGATTTCCACGGTTCAAACTCTAGCGGT AATTACTCTCTTCGGGAGAGAGTTCCGCTACAGAACTCGCGTTTCGCCTCTAATTTGGAGGATTTTGGGACTCCAAGCGCACCTCCTGTTATGGATGTAG GAAGAGAAGAGAGTAGCATCGGATTTGAAACTCCGGGCCAAGGTGGGGATGGGGTACACGAGTTTGGAGAGTTGGGGAATCGTTATGGCGGATGGGAGTG CCCGCTGGATCCAACATTGCATTCTGTTCAAAGCAAAGAATTTACTGGAACGGGAGTGAAGGCGACACTGACAGATCGAATGGAAGAAAAGATGCCTTAT TGGCAGACAAGTTCCTTGGACCAATCATACACAAGGCAATATCGCAGCGGCCAACATGCTTGGCAAACTCTCATAGCATATGATGCTTGTATCCGCTTAT GTCTATACTCATGGGCTAGAGGGTGCACCGAGGCTCCTGAATTCATGCGGGATGAGTGTTTGCTTCTCCGAAGTGCTTTTGGACTGCACAAATTTTTGTT ACAGCCGCGAAACGTGCAGGCGACAGAAGTGAGGACTACCAAAAATGCAGACCCAATGGGTTCTGCAAAGGTTAAGAAGGTTGTAGGGAAGATAAGAGTG GAAGTAAGGAAGCTTCGAGTAGTTCCAAGAAGGAAACTCAAGAGTATGAATTCGATGCGGAGTGCAGTATACATGCAAGTGGGGAAAGATTATGTGAAAC AAGTGTCGTCTCTTGTAAAAAACGGCATGAATTCTCTTAAGCTTGCTTCATTTCCAGCGACTTCAGAAGAGCAACTGTCATGCTTTTTTCAATTAAAGAG CGCTTCGGAAGATGCCGAAGTTGAATCTGCTTCCACAATATGCTTGCACCCTGGAACTGGGGAGTACCATGTCTTTTTTCCGGAGAGTGAAGGAGATGCT CTATTGGTAGAGGTTCAAGATAACAAAAAATCACTCGAAGGTCGAGCCACAATTCCAATTTCGTCACTGAATGAAAACTCGAACGACAGAATTAGATGGT GGCCTCTGTACCATGAAGGCCAAGAATGTGTTGGGAAAGTGCAGCTCTACATTGGCAGCACAATTACCTGTGACGAGACAAATAACATAAAGAGTGGACC TGTTGCGGAGACCCTGGCTTATGACTTGTTGCTGGAGGCTTCCATGCGCTCCCAACATTTTCATGCTCGAAATTTGAAGTTAAATGGACCTTGGAAGTGG CTCCTGACCGAATTTGCAGAATATTACGGAGTATCTGATTCATATACAAAGCTGAGGTATCTTTCACATGTCATGAATGTGGCTAATCCTACTAAGGATT GCTTGGAGCTTGTGAACGAGTTGCTGATACCCATTTTAAAGGCTAGAAGTGAAAAGAATTTGACTAGACAAGAGAAAAGTATATTGCTAGACTGCGAAAT GCAAATTGAAAAGCTATTGGCAAATGTTTTCGAGAACTACAACTTGCTGGATGAGTCATCTCCTGCTGGATTGGCCGACGTATTTGGTCCTGTACAAGAG TCCGCTGCACCTGCTTTAACTCCTGCTGTTAATGTTTACACTCTTCTTCATGATATATTGTCTCAAGATGCACAAACTATGTTGAAGAATTACTTACAGA CTGCAGCTAAGAAAAGGTGTCGCAAGCACATGATTGAGACTGATGAATTCGTGTCATGCAACGCGGAAGGTTTCCTCATGGACTCGATAACTGTGTCAAC TGCTTATTTGAAAATGAAGAATCTGTGCATGAACATTAGCAAAGAAATACAGGCAGACATCAAAATCCACAATCAGAACATATTCCCCAGCTCCATTGAC CTGTCAAATATCTCAGCTGCTGTTTACAGCACTGAACTGTGTGAAAGGATTAGACGTTTTCTGTCTGCTTGGCCTCCGAGCAGCCCACATCCACATGTAA ATGAGCTTCTGACAGCAATTGCCGACTTTGAGAGGGACCTTGGTTTATGGAAAATCAGTCCAGTGCAGGGCGGTGTAGAAGCGAGGGGGTTGTTCCATAG CTACATAATCGTGTGGGTGCAAGATATGGAACTGAACTTGAATGAGCTTTGCAAAGCAGAGAAGAATGATGACTTGCGGCAGGTACCATGGGCTGGGGTA ACCACTAATCATTCCACATCTCCATTTGCTGAAGAGATGTATGAGAAAATGAAGGAGTCTCTAATTGGCTACGAAGTGGTGGTCAATAGATGGCCTCAGT ATTCACTGATCCTTGAAACTGCTGCTGCTAATATAGAACGAGCAATCATTAAAGCATTGGAGAAGCAACACAATGACATCTTGACTCCATTGAAAGACAG CATTCCCAAGAGGCTAAATCTGCAAGTTCAGAAGCTAACAAGGAGACAATCCATGGCCCCTTACTCTGTACCAAATCAACTGGGAACGTTTGTGAACACG ATCAAGCGAATTGTAGATGTCTTGCATTGTAGAATAGAGGAGATCTTGAGATCGTGGGCTTCTTGTCTGCCCGTGGTGGGAGATAAAAGATCAACTTTTG GGGAACAGATGAATGGAATCACAGTTTTGCTCAAAACCAAGTACAAAAATTACTTGCAGGCCACGGTGGAAAAGCTTGTGAACAACATTCAAGCTAACCG TGGGACGAGGCTGAAAAGAATATTGGAAGAGATAAAAGAAGAGGATGGAGAGGCTGATGTCCGCGAAAGAATGCAAATGCTGAGCTCACAGCTCATTGAC TCCATATCGAATCTTCATGGTGTCTTTTCCAGTCGGATATTCGTTGCAGCATCTCGTGGATTATGGGATAGAATGGGACAGATGGTACTGAAGTTTCTTG AAGGCAGAAAGGAGAACAGAGTATGGTACAATGGGTCTTGCTATGCACTTGGGATACTGGACGACGTATTTGCTTCGCAGATGCAGCGGCTTCTAGGGAA TGCAATTCAAGAAAAGGATATAGAAACGCCTCGATCGGTGATTGAAGCCAGATCCATTCTCTGCTAA
AA sequence Show only first row Show all	>Lus10016071 pacid=23154435 polypeptide=Lus10016071 locus=Lus10016071.g ID=Lus10016071.BGIv1.0 annot-version=v1.0 MFTEGLDESAINWINQGRTVDGSLQRVRSPLSPLTETRSPVGLFPKSPVPRSPHLYSSASSQLLPPLKFSVSGLLTPRTLVPPSFSDEQDDSESVGSVSE YTAGNFSVYGGEGEDEEEEEVGNVADLDYLEKSGRQCYDDADIVFVERPKRKLNRGLLKEDLKIEVPGGGGNGGGLRRFTTDGELGARRLADFHGSNSSG NYSLRERVPLQNSRFASNLEDFGTPSAPPVMDVGREESSIGFETPGQGGDGVHEFGELGNRYGGWECPLDPTLHSVQSKEFTGTGVKATLTDRMEEKMPY WQTSSLDQSYTRQYRSGQHAWQTLIAYDACIRLCLYSWARGCTEAPEFMRDECLLLRSAFGLHKFLLQPRNVQATEVRTTKNADPMGSAKVKKVVGKIRV EVRKLRVVPRRKLKSMNSMRSAVYMQVGKDYVKQVSSLVKNGMNSLKLASFPATSEEQLSCFFQLKSASEDAEVESASTICLHPGTGEYHVFFPESEGDA LLVEVQDNKKSLEGRATIPISSLNENSNDRIRWWPLYHEGQECVGKVQLYIGSTITCDETNNIKSGPVAETLAYDLLLEASMRSQHFHARNLKLNGPWKW LLTEFAEYYGVSDSYTKLRYLSHVMNVANPTKDCLELVNELLIPILKARSEKNLTRQEKSILLDCEMQIEKLLANVFENYNLLDESSPAGLADVFGPVQE SAAPALTPAVNVYTLLHDILSQDAQTMLKNYLQTAAKKRCRKHMIETDEFVSCNAEGFLMDSITVSTAYLKMKNLCMNISKEIQADIKIHNQNIFPSSID LSNISAAVYSTELCERIRRFLSAWPPSSPHPHVNELLTAIADFERDLGLWKISPVQGGVEARGLFHSYIIVWVQDMELNLNELCKAEKNDDLRQVPWAGV TTNHSTSPFAEEMYEKMKESLIGYEVVVNRWPQYSLILETAAANIERAIIKALEKQHNDILTPLKDSIPKRLNLQVQKLTRRQSMAPYSVPNQLGTFVNT IKRIVDVLHCRIEEILRSWASCLPVVGDKRSTFGEQMNGITVLLKTKYKNYLQATVEKLVNNIQANRGTRLKRILEEIKEEDGEADVRERMQMLSSQLID SISNLHGVFSSRIFVAASRGLWDRMGQMVLKFLEGRKENRVWYNGSCYALGILDDVFASQMQRLLGNAIQEKDIETPRSVIEARSILC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48310			unknown protein		Lus10016071 [exp]	0	1
AT5G48310			unknown protein		Lus10025189 [exp]	1.0	0.9916
AT2G22610			Di-glucose binding protein wit...		Lus10025708 [exp]	2.0	0.9822
AT3G19050		POK2	phragmoplast orienting kinesin...		Lus10012048 [exp]	2.4	0.9780
AT1G04870		PRMT10, ATPRMT1...	protein arginine methyltransfe...		Lus10043295 [exp]	3.7	0.9566
AT3G19050		POK2	phragmoplast orienting kinesin...		Lus10018341 [exp]	6.0	0.9659
AT1G18370		HIK, ATNACK1	HINKEL, ARABIDOPSIS NPK1-ACTIV...		Lus10032452 [exp]	6.9	0.9695
AT2G36200			P-loop containing nucleoside t...		Lus10021340 [exp]	7.7	0.9675
AT5G15510			TPX2 (targeting protein for Xk...		Lus10030650 [exp]	8.5	0.9575
AT3G21620			ERD (early-responsive to dehyd...		Lus10035300 [exp]	8.9	0.9620
AT3G15550			unknown protein		Lus10025758 [exp]	9.0	0.9603

Compare expression of checked genes

Lus10016071 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.