Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12650 1122 / 0 Endomembrane protein 70 protein family (.1) AT5G35160 887 / 0 Endomembrane protein 70 protein family (.1.2) AT2G24170 529 / 0 Endomembrane protein 70 protein family (.1) AT5G10840 521 / 2e-178 Endomembrane protein 70 protein family (.1) AT3G13772 516 / 2e-176 AtTMN7 transmembrane nine 7 (.1) AT5G25100 516 / 4e-176 Endomembrane protein 70 protein family (.1.2) AT1G55130 502 / 8e-171 AtTMN6 transmembrane nine 6, Endomembrane protein 70 protein family (.1) AT5G37310 244 / 2e-72 Endomembrane protein 70 protein family (.1) AT1G14670 238 / 7e-70 Endomembrane protein 70 protein family (.1) AT2G01970 233 / 7e-68 Endomembrane protein 70 protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027831 [exp] 884 / 0 AT5G35160 1104 / 0.0 Endomembrane protein 70 protein family (.1.2) Lus10005060 [exp] 875 / 0 AT5G35160 1100 / 0.0 Endomembrane protein 70 protein family (.1.2) Lus10019073 [exp] 653 / 0 AT5G35160 749 / 0.0 Endomembrane protein 70 protein family (.1.2) Lus10000222 [exp] 532 / 0 AT5G10840 1071 / 0.0 Endomembrane protein 70 protein family (.1) Lus10015624 [exp] 530 / 0 AT3G13772 1133 / 0.0 transmembrane nine 7 (.1) Lus10037643 [exp] 528 / 0 AT3G13772 1134 / 0.0 transmembrane nine 7 (.1) Lus10042415 [exp] 526 / 4e-180 AT5G10840 1129 / 0.0 Endomembrane protein 70 protein family (.1) Lus10026254 [exp] 525 / 1e-179 AT5G10840 1129 / 0.0 Endomembrane protein 70 protein family (.1) Lus10031876 [exp] 237 / 1e-69 AT2G01970 1059 / 0.0 Endomembrane protein 70 protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G172200 [exp] 1176 / 0 AT4G12650 1115 / 0.0 Endomembrane protein 70 protein family (.1) Potri.002G217300 [exp] 1171 / 0 AT4G12650 1122 / 0.0 Endomembrane protein 70 protein family (.1) Potri.018G113500 [exp] 885 / 0 AT5G35160 1127 / 0.0 Endomembrane protein 70 protein family (.1.2) Potri.006G189300 [exp] 884 / 0 AT5G35160 1122 / 0.0 Endomembrane protein 70 protein family (.1.2) Potri.006G184200 [exp] 535 / 0 AT2G24170 961 / 0.0 Endomembrane protein 70 protein family (.1) Potri.018G018400 [exp] 533 / 0 AT5G10840 1070 / 0.0 Endomembrane protein 70 protein family (.1) Potri.018G106600 [exp] 528 / 0 AT2G24170 971 / 0.0 Endomembrane protein 70 protein family (.1) Potri.003G038700 [exp] 518 / 6e-177 AT3G13772 1085 / 0.0 transmembrane nine 7 (.1) Potri.006G264500 [exp] 514 / 3e-175 AT5G10840 1059 / 0.0 Endomembrane protein 70 protein family (.1) Potri.004G075450 [exp] 243 / 1e-71 AT5G37310 953 / 0.0 Endomembrane protein 70 protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02990 [flax] [poplar] EMP70 Endomembrane protein 70
Representative CDS sequence Show only first row Show all	>Lus10016072 pacid=23154373 polypeptide=Lus10016072 locus=Lus10016072.g ID=Lus10016072.BGIv1.0 annot-version=v1.0 ATGAGGATGCCCAAGATGCACTGGGCTTTCCTTTTGGTGGTTTGTTTAGCACACTCTTGCAGTGGATTTTATCTGCCTGGTAGCTATATGCATACGTATT CGACAGGGGATCCCATAACGGCAAAAGTTAATTCGTTAACTTCTATTGAGACAGAGCTCCCATTTAGCTACTACAGTCTTCCTTACTGCAAGCCAACTGA GGGAATTAAGAAGAGTGCCGAGAATCTGGGAGAGCTCCTTATGGGAGATCAAATTGATAACTCTCCATATAAGTTCAAGATGAACGTTAATGAATCTGTT TACCTCTGTACCACACCTCCGTTGAGTGAGCATGAGGTAAAGCTTTTGAAACAGAGAACTCGTGATCTGTATCAAGTAAACATGATTTTGGATAATTTGC CTGTGATGAGGTATGCTACTCAGAATGGAATCAAGATCCAGTGGACTGGATTTCCAGTTGGGTATACGCCACAGAACAGCAATGAAGATTACTTTATTAA TCACCTTAAGTTCACGGTCTTGGTTCATGAGTACGAGGGAAAGGGTGTGGAGATAATCGGTACTGGTGAAGAAGGTATGGGTGTGATCTCTGAAGGAGAT AAGAAGGGTGCTTCTGGGTTTGAGATTGTTGGCTTTGAGGTTGTGCCCTGTAGCGTTAAGTACGATTCTGAAAAAATGATAAAGCTCCATATGTATGACA ATATCACTGCTCCAATGTGCCCCTTGGAACTTGAAAAGTCTCAGATCATAAGGGAGCAGGAAAGAGTTACATTCACTTACGAGGTTGAGTTCGTAAAAAG TGATGTTAAGTGGCCATCTCGTTGGGATGCTTACCTGAAAATGGAAGGTGCTCGTGTCCACTGGTTCTCAATCCTCAACTCACTGATGGTGATCTTTTTC TTGGCTGGCATCGTGTTTGTCATATTCCTAAGGACTGTTAGGAGGGATTTGACAAGATATGAGGAGTTGGACAAGGAAGCTCAAGCACAAATGAATGAAG AGCTTTCAGGCTGGAAGCTTGTGGTTGGGGATGTGTTCAGAGAACCAGAGCACTCAAAGCTTCTCTGTGTTATGATTGGAGATGGAGTGCAAATCACTGG GATGGCAGGTGTCACCATAATTTTTGCTGCTTTTGGTTTCATGTCACCGGCTTCTAGAGGAATGCTGCTGACTGGGATGATAATCCTATATCTTTTCCTC GGTATCGCTGCCGGATATGCTGCAGTCAGATTGTGGGTAACCATCAAGGGAACTAGCGAAGGGTGGAGATCTGTTTCCTGGTCAGTCGCATGCTTCTTCC CTGGAATCGTATTTGTCATCCTCACAGTGTTGAACTTCATCCTCTGGGGAAGCAAGTCCACCGGTGCAATTCCCATTTCCTTATACTTCATACTCATTGC TCTCTGGTTCTGCATTTCGGTGCCACTGACCCTCTTGGGAGGTTTCTTTGGCACACGAGCCGAAGCTATTCAGTACCCTGTGAGGACCAACCAGATTCCA AGGGAAATTCCAGAACGCAAGTACCCTTCGTGGCTCCTCGTCCTCGGCGCTGGAACCCTCCCCTTCGGGACCCTTTTCATCGAGCTCTTCTTCATCCTTT CCAGCATATGGCTTGGACGGTTCTATTACGTCTTTGGTTTCCTGCTCATAGTTCTTGTGCTGTTGATCGTGGTTTGCGCTGAGGTATCGGTGGTTCTCAC ATACATGCATCTCTGCGTGGAGGATTGGAGGTGGTGGTGGAAGGCATTCTTCGCATCGGGATCGGTCGCTCTGTACGTCTTCTTGTACTCCATAAATTAC TTGGTATTCGATCTGCAGAGCTTGAGTGGACCGGTCTCGGCCATCCTCTACCTCGGATACTCGCTAATAATGGCCATCGCGATCATGTTATCCACTGGTA CCATCGGGTTCGGGATGTCCTTCTACTTCGTGCACTACCTCTTCTCATCGGTGAAGATCGATTAG
AA sequence Show only first row Show all	>Lus10016072 pacid=23154373 polypeptide=Lus10016072 locus=Lus10016072.g ID=Lus10016072.BGIv1.0 annot-version=v1.0 MRMPKMHWAFLLVVCLAHSCSGFYLPGSYMHTYSTGDPITAKVNSLTSIETELPFSYYSLPYCKPTEGIKKSAENLGELLMGDQIDNSPYKFKMNVNESV YLCTTPPLSEHEVKLLKQRTRDLYQVNMILDNLPVMRYATQNGIKIQWTGFPVGYTPQNSNEDYFINHLKFTVLVHEYEGKGVEIIGTGEEGMGVISEGD KKGASGFEIVGFEVVPCSVKYDSEKMIKLHMYDNITAPMCPLELEKSQIIREQERVTFTYEVEFVKSDVKWPSRWDAYLKMEGARVHWFSILNSLMVIFF LAGIVFVIFLRTVRRDLTRYEELDKEAQAQMNEELSGWKLVVGDVFREPEHSKLLCVMIGDGVQITGMAGVTIIFAAFGFMSPASRGMLLTGMIILYLFL GIAAGYAAVRLWVTIKGTSEGWRSVSWSVACFFPGIVFVILTVLNFILWGSKSTGAIPISLYFILIALWFCISVPLTLLGGFFGTRAEAIQYPVRTNQIP REIPERKYPSWLLVLGAGTLPFGTLFIELFFILSSIWLGRFYYVFGFLLIVLVLLIVVCAEVSVVLTYMHLCVEDWRWWWKAFFASGSVALYVFLYSINY LVFDLQSLSGPVSAILYLGYSLIMAIAIMLSTGTIGFGMSFYFVHYLFSSVKID

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12650			Endomembrane protein 70 protei...		Lus10016072 [exp]	0	1
AT2G01970			Endomembrane protein 70 protei...		Lus10031308 [exp]	1.4	0.9685
AT5G10840			Endomembrane protein 70 protei...		Lus10026254 [exp]	1.4	0.9631
AT2G01970			Endomembrane protein 70 protei...		Lus10031876 [exp]	2.4	0.9614
AT1G18580		GAUT11	galacturonosyltransferase 11 (...		Lus10013506 [exp]	2.8	0.9594
AT1G18580		GAUT11	galacturonosyltransferase 11 (...		Lus10007979 [exp]	3.9	0.9545
AT5G35160			Endomembrane protein 70 protei...		Lus10005060 [exp]	4.2	0.9353
AT1G63910	MYB	AtMYB103	myb domain protein 103 (.1)		Lus10032298 [exp]	4.5	0.9347
AT2G20840			Secretory carrier membrane pro...		Lus10039794 [exp]	4.6	0.9445
AT1G62020			Coatomer, alpha subunit (.1)		Lus10040752 [exp]	4.9	0.9466
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Lus10012348 [exp]	5.1	0.9274

Compare expression of checked genes

Lus10016072 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.