Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11120 549 / 0 translation elongation factor Ts (EF-Ts), putative (.1) AT4G29060 89 / 5e-19 EMB2726 embryo defective 2726, elongation factor Ts family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012296 [exp] 725 / 0 AT4G11120 531 / 0.0 translation elongation factor Ts (EF-Ts), putative (.1) Lus10043229 [exp] 90 / 3e-19 AT4G29060 1035 / 0.0 embryo defective 2726, elongation factor Ts family protein (.1.2) Lus10011108 [exp] 85 / 2e-17 AT4G29060 1031 / 0.0 embryo defective 2726, elongation factor Ts family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G172300 [exp] 575 / 0 AT4G11120 514 / 0.0 translation elongation factor Ts (EF-Ts), putative (.1) Potri.018G083900 [exp] 90 / 2e-19 AT4G29060 691 / 0.0 embryo defective 2726, elongation factor Ts family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00889 [flax] [poplar] EF_TS Elongation factor TS
Representative CDS sequence Show only first row Show all	>Lus10016073 pacid=23154358 polypeptide=Lus10016073 locus=Lus10016073.g ID=Lus10016073.BGIv1.0 annot-version=v1.0 ATGGCTTTCTGCAGAAGCGCAAAACGTCCGCTTTACATGATGATGATGTCTACAGGTAGGATCGCCACATCCAAAGGGAGCTGCCCTTCAACTCTAGAAT CCAGTCTCGGAATTTTCCTCCGGAGGTTCACCTCTCAGGCTCCGGCGGCGGTGGATCAGAAGAATCTCATCAAGCAATTGAGGGAGAGAACCAGTGCTCC AATCAAGGACGTCAAGGCTTCCCTCGTCGAATGTAACTGGGACATTGAGGCGGCACAAAAGGATTTGAGGAAAAGAGGGGTAGTTCTGGCGTCGAAGAAG TCGGCTCGAACTGCTACTGAAGGGTTGCTTGCATTGGCACACAGCGAGGGAAAAGCTGCTATTATCGAGCTTAATTGCGAGACCGACTTTGTTGCCAGAA ACGAGATATTTCAGTACTTGGCTCTAACTCTAGCAAAGCAAGCTCTGCTGGTCGAGAATGGTTCTCAGCAGGCATCAACTGTCCTTCCTTTTGGACCTGA ATCTTTGGAGGAACTGAAGTTAAATCTTGAACATCCCAAGATAAGTGGAGAAACTACTGTACAAAACGCAATTACTGAGGTAGCTGCAATGATGGGTGAG AACGTGAAACTCAGAAGAGGGTTTGTGATGTCTACTCCGGGTGTTCTTTCAACCTACCTCCATACAAGTCCTCAACCAGGTTTGGGCCGTATTGCTGGAC TTTTGTCTCTTGAAGCTGAGGATGCAACAAGTTCTCACTTGGATGCTCTTCAGCGAGTAGGATCAGAATTGGCAATGCATGTGGTTGCTGCAAAGCCATT ATTCTTAAATAAGGAACTAGTTTCTTCTGAGGCATTGGAGAGTGAGCGCGAGATTCTTAAGTCTCAGGCCGAAAGTACTGGGAAATCACAGATGGCCATC GAGAAAATGGTTGAAGGTCGTATGCGAAAATATTTTGAGGAAGTTGTCCTCATGGAGCAGAAATTTATTGTGAATGATACTCTAAATGTCAAGACTCTGT TGAACAATCTGTCCAAGGAAGTGGGTTCACCAGTGAAGATAGGCAACTTTTTCAGAATGGAAGTTGGCGAGGGAATTCAAAGGCTCGATGCATCCGCAGA TGAACCAGTGGCTCAAGCCGCATAA
AA sequence Show only first row Show all	>Lus10016073 pacid=23154358 polypeptide=Lus10016073 locus=Lus10016073.g ID=Lus10016073.BGIv1.0 annot-version=v1.0 MAFCRSAKRPLYMMMMSTGRIATSKGSCPSTLESSLGIFLRRFTSQAPAAVDQKNLIKQLRERTSAPIKDVKASLVECNWDIEAAQKDLRKRGVVLASKK SARTATEGLLALAHSEGKAAIIELNCETDFVARNEIFQYLALTLAKQALLVENGSQQASTVLPFGPESLEELKLNLEHPKISGETTVQNAITEVAAMMGE NVKLRRGFVMSTPGVLSTYLHTSPQPGLGRIAGLLSLEAEDATSSHLDALQRVGSELAMHVVAAKPLFLNKELVSSEALESEREILKSQAESTGKSQMAI EKMVEGRMRKYFEEVVLMEQKFIVNDTLNVKTLLNNLSKEVGSPVKIGNFFRMEVGEGIQRLDASADEPVAQAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11120			translation elongation factor ...		Lus10016073 [exp]	0	1
AT3G17465		RPL3P	ribosomal protein L3 plastid (...		Lus10017709 [exp]	3.6	0.9577
AT2G04400			Aldolase-type TIM barrel famil...		Lus10006354 [exp]	6.6	0.9551
AT3G61110		ARS27A	ribosomal protein S27 (.1)		Lus10032212 [exp]	8.2	0.9531
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Lus10015841 [exp]	9.0	0.9541
AT3G59820			LETM1-like protein (.1.2)		Lus10027069 [exp]	11.2	0.9400
AT5G10920			L-Aspartase-like family protei...		Lus10002606 [exp]	11.6	0.9505
AT2G04400			Aldolase-type TIM barrel famil...		Lus10012310 [exp]	12.7	0.9456
AT3G55010		EMB2818, ATPURM...	EMBRYO DEFECTIVE 2818, phospho...		Lus10039497 [exp]	13.0	0.9308
AT4G32720		ATLA1	La protein 1 (.1.2)		Lus10011685 [exp]	13.5	0.9400
AT3G53740			Ribosomal protein L36e family ...		Lus10024402 [exp]	17.3	0.9465

Compare expression of checked genes

Lus10016073 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.