Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61520 431 / 4e-154 LHCA3*1, LHCA3*1, LHCA3*1 photosystem I light harvesting complex gene 3 (.1.2.3) AT3G47470 155 / 5e-46 CAB4, LHCA4 light-harvesting chlorophyll-protein complex I subunit A4 (.1) AT3G61470 151 / 2e-44 LHCA2 photosystem I light harvesting complex gene 2 (.1) AT1G45474 150 / 3e-44 LHCA5 photosystem I light harvesting complex gene 5 (.1.2) AT1G19150 145 / 5e-42 LHCA2*1, LHCA2*1, LHCA2*1, LHCA2*1, LHCA2*1, LHCA2*1, LHCA2*1, LHCA6, LHCA2*1, LHCA2*1, LHCA2*1, LH photosystem I light harvesting complex gene 6 (.1) AT5G54270 114 / 2e-30 LHCB3*1, LHCB3*1, LHCB3*1, LHCB3*1, LHCB3*1, LHCB3*1, LHCB3*1, LHCB3*1, LHCB3*1, LHCB3*1, LHCB3*1, light-harvesting chlorophyll B-binding protein 3 (.1) AT2G05100 110 / 8e-29 LHCB2.3, LHCB2.1 LIGHT-HARVESTING CHLOROPHYLL B-BINDING 2, photosystem II light harvesting complex gene 2.1 (.1) AT3G27690 109 / 1e-28 LHCB2.3, LHCB2:4 LIGHT-HARVESTING CHLOROPHYLL B-BINDING 2, photosystem II light harvesting complex gene 2.3 (.1) AT2G05070 109 / 2e-28 LHCB2.2 LIGHT-HARVESTING CHLOROPHYLL B-BINDING 2, photosystem II light harvesting complex gene 2.2 (.1) AT1G29910 108 / 5e-28 AB180, LHCB1.2, CAB3 LIGHT HARVESTING CHLOROPHYLL A/B BINDING PROTEIN 1.2, chlorophyll A/B binding protein 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012297 [exp] 479 / 4e-173 AT1G61520 474 / 2e-171 photosystem I light harvesting complex gene 3 (.1.2.3) Lus10001644 [exp] 157 / 1e-46 AT3G47470 437 / 3e-157 light-harvesting chlorophyll-protein complex I subunit A4 (.1) Lus10021663 [exp] 155 / 5e-46 AT3G47470 434 / 2e-156 light-harvesting chlorophyll-protein complex I subunit A4 (.1) Lus10021730 [exp] 147 / 8e-43 AT1G45474 369 / 2e-130 photosystem I light harvesting complex gene 5 (.1.2) Lus10039912 [exp] 147 / 1e-42 AT1G19150 362 / 2e-127 photosystem I light harvesting complex gene 6 (.1) Lus10006416 [exp] 145 / 8e-42 AT3G61470 404 / 6e-144 photosystem I light harvesting complex gene 2 (.1) Lus10042657 [exp] 144 / 8e-42 AT1G45474 371 / 3e-131 photosystem I light harvesting complex gene 5 (.1.2) Lus10011361 [exp] 144 / 9e-42 AT3G61470 414 / 6e-148 photosystem I light harvesting complex gene 2 (.1) Lus10001741 [exp] 118 / 1e-31 AT3G27690 481 / 1e-174 LIGHT-HARVESTING CHLOROPHYLL B-BINDING 2, photosystem II light harvesting complex gene 2.3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G172400 [exp] 429 / 2e-153 AT1G61520 362 / 3e-127 photosystem I light harvesting complex gene 3 (.1.2.3) Potri.015G062200 [exp] 159 / 9e-48 AT3G47470 442 / 2e-159 light-harvesting chlorophyll-protein complex I subunit A4 (.1) Potri.014G029700 [exp] 151 / 2e-44 AT1G45474 306 / 3e-105 photosystem I light harvesting complex gene 5 (.1.2) Potri.006G139600 [exp] 150 / 3e-44 AT1G19150 393 / 1e-139 photosystem I light harvesting complex gene 6 (.1) Potri.003G171500 [exp] 146 / 1e-42 AT3G61470 409 / 5e-146 photosystem I light harvesting complex gene 2 (.1) Potri.001G056700 [exp] 146 / 2e-42 AT3G61470 410 / 3e-146 photosystem I light harvesting complex gene 2 (.1) Potri.014G165100 [exp] 118 / 8e-32 AT2G05100 507 / 0.0 LIGHT-HARVESTING CHLOROPHYLL B-BINDING 2, photosystem II light harvesting complex gene 2.1 (.1) Potri.002G221400 [exp] 116 / 4e-31 AT2G05070 499 / 0.0 LIGHT-HARVESTING CHLOROPHYLL B-BINDING 2, photosystem II light harvesting complex gene 2.2 (.1) Potri.001G407100 [exp] 111 / 4e-29 AT5G54270 478 / 2e-173 light-harvesting chlorophyll B-binding protein 3 (.1) Potri.011G126700 [exp] 110 / 4e-29 AT5G54270 446 / 3e-161 light-harvesting chlorophyll B-binding protein 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00504 [flax] [poplar] Chloroa_b-bind Chlorophyll A-B binding protein
Representative CDS sequence Show only first row Show all	>Lus10016074 pacid=23154442 polypeptide=Lus10016074 locus=Lus10016074.g ID=Lus10016074.BGIv1.0 annot-version=v1.0 ATGGCGGCACAGGCTCTGCTATCATCCTCCCTCACATCTTCAGTTGAATCCGCCAGGCAGATTCTAGGACCAAGGACTAGATTCGGGTCCTCCAGGAAAG GATCCTTTGTTGTCAGGGCCGCTTCCACTCCCCCTGTCAAGCAAGGGGCTGACAGACAACTATGGTTTGCATCCAAGCAGAGTCTGTCTTACCTTGATGG AAGCCTACCAGGTGACTTCGGATTCGACCCACTTGGTCTCTCAGACCCAGAAGGTACAGGAGGATTCATCGAGCCGAAATGGTTGGCTTATGGTGAGATA ATCAACGGGCGGTTCGCCATGTTGGGAGCTGCTGGCGCCATTGCCCCTGAAATTCTGGGGAAAGCCGGTCTCATCCCGGCCGAAACAGCCCTTCCTTGGT TCCAGACCGGGGTGATCCCTCCGGCCGGAACATACAGCTACTGGGCAGACTCATATACACTTTTCGTGCTAGAGATGGCACTGATGGGATTCGCCGAGCA CCGGAGGCTCCAGGACTGGTACAACCCGGGATCCATGGGGAAGCAGTACTTCTTGGGGTTTGAGAAGTTCCTTGGAGGCTCAGGTGACCCTGCTTACCCT GGAGGACCCATTTTCAACCCTCTTGGCTTTGGGAAAGACGAGAAGTCGCTCAAGGAATTGAAGCTGAAGGAGGTGAAGAATGGGAGGCTGGCCATGTTGG CTATCTTGGGTTACTTTATACAGGGTCTAGTAACTGGTGTTGGTCCATACCAGAACCTCCTTGACCACTTGGCTGATCCTGTCAACAACAACATCTTGAC AAGCCTCAAGTTCCATTAG
AA sequence Show only first row Show all	>Lus10016074 pacid=23154442 polypeptide=Lus10016074 locus=Lus10016074.g ID=Lus10016074.BGIv1.0 annot-version=v1.0 MAAQALLSSSLTSSVESARQILGPRTRFGSSRKGSFVVRAASTPPVKQGADRQLWFASKQSLSYLDGSLPGDFGFDPLGLSDPEGTGGFIEPKWLAYGEI INGRFAMLGAAGAIAPEILGKAGLIPAETALPWFQTGVIPPAGTYSYWADSYTLFVLEMALMGFAEHRRLQDWYNPGSMGKQYFLGFEKFLGGSGDPAYP GGPIFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHLADPVNNNILTSLKFH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G61520		LHCA3*1, LHCA3*...	photosystem I light harvesting...		Lus10016074 [exp]	0	1
AT1G61520		LHCA3*1, LHCA3*...	photosystem I light harvesting...		Lus10012297 [exp]	1.0	0.9906
AT3G61470		LHCA2	photosystem I light harvesting...		Lus10011361 [exp]	1.4	0.9826
AT3G47470		CAB4, LHCA4	light-harvesting chlorophyll-p...		Lus10021663 [exp]	2.8	0.9694
AT3G61470		LHCA2	photosystem I light harvesting...		Lus10006416 [exp]	3.0	0.9756
AT1G55670		PSAG	photosystem I subunit G (.1)		Lus10017476 [exp]	4.2	0.9607
AT4G34190		SEP1	stress enhanced protein 1 (.1)		Lus10002821 [exp]	4.2	0.9476
AT3G61870			unknown protein		Lus10012617 [exp]	4.9	0.9517
AT1G55670		PSAG	photosystem I subunit G (.1)		Lus10028806 [exp]	5.5	0.9666
AT3G47470		CAB4, LHCA4	light-harvesting chlorophyll-p...		Lus10001644 [exp]	5.9	0.9552
AT1G60950		FED A, ATFD2, F...	FERREDOXIN 2, 2Fe-2S ferredoxi...		Lus10015462 [exp]	8.4	0.9439

Compare expression of checked genes

Lus10016074 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.