Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48330 446 / 2e-152 RUG2 RCC1/UVR8/GEF-like 2, Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) AT5G63860 109 / 2e-25 UVR8 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) AT3G02510 104 / 4e-24 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) AT5G60870 100 / 4e-22 RUG3 RCC1/UVR8/GEF-like 3, Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2), Regulator of chromosome condensation (RCC1) family protein (.3) AT5G16040 97 / 1e-21 Regulator of chromosome condensation (RCC1) family protein (.1) AT2G04039 89 / 2e-20 unknown protein AT5G12350 86 / 2e-17 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G42140 86 / 5e-17 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G19420 81 / 2e-15 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) AT1G19880 79 / 3e-15 Regulator of chromosome condensation (RCC1) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012298 [exp] 821 / 0 AT5G48330 525 / 0.0 RCC1/UVR8/GEF-like 2, Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Lus10039618 [exp] 110 / 1e-25 AT5G63860 715 / 0.0 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) Lus10042215 [exp] 99 / 8e-22 AT5G60870 547 / 0.0 RCC1/UVR8/GEF-like 3, Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2), Regulator of chromosome condensation (RCC1) family protein (.3) Lus10033543 [exp] 98 / 9e-22 AT3G02510 648 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Lus10017581 [exp] 95 / 1e-20 AT3G02510 636 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Lus10036737 [exp] 92 / 6e-19 AT1G69710 974 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10037192 [exp] 89 / 7e-18 AT1G69710 986 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10029536 [exp] 82 / 2e-16 AT5G63860 642 / 0.0 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) Lus10016335 [exp] 82 / 5e-16 AT5G19420 971 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G198300 [exp] 501 / 5e-174 AT5G48330 533 / 0.0 RCC1/UVR8/GEF-like 2, Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Potri.002G217400 [exp] 105 / 3e-26 AT2G04039 171 / 2e-54 unknown protein Potri.007G100200 [exp] 108 / 4e-25 AT5G63860 738 / 0.0 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) Potri.014G172800 [exp] 98 / 2e-23 AT2G04039 169 / 3e-53 unknown protein Potri.004G101800 [exp] 100 / 2e-22 AT5G16040 665 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.017G113200 [exp] 97 / 2e-21 AT5G16040 676 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.001G276900 [exp] 85 / 6e-17 AT5G19420 1483 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.009G071800 [exp] 84 / 2e-16 AT5G19420 1610 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.008G059800 [exp] 82 / 4e-16 AT3G55580 566 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.010G199100 [exp] 81 / 7e-16 AT3G55580 564 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00415 [flax] [poplar] RCC1 Regulator of chromosome condensation (RCC1) repeat CL0186 [flax] [poplar] PF11210 [flax] [poplar] DUF2996 Protein of unknown function (DUF2996)
Representative CDS sequence Show only first row Show all	>Lus10016075 pacid=23154353 polypeptide=Lus10016075 locus=Lus10016075.g ID=Lus10016075.BGIv1.0 annot-version=v1.0 ATGCTACGGCGAATCTGCACCATCCTGAAGAAGGATCGCAGCCTTCTCCAGCAGACCGCTCGCTTCTCTACCACTACCAACAATGGCGCCGCTGATACTT CACGCTACGGGGTAGTGATGAGCTTCGGTGATGGCAATCATGGAGCCCTGGGTCTACCGCCTTCTCTTACAGGTATCGGAGCAGATGTTTACGAGCCGAC TGTCATTCCAGGGTTTCCATCCGATATCACGTCCGTCGCCGCTGGCCACTATCATTCTCTCGCCAGTCACCTCTCGTGGAGATCTATGGGCATGGGGCCG CAACGAAGAAGCTCAACTTGGCCGAGGCGTTCTTGTCCCCAGAGCTTGGATCAAGTTCACGTTACAGCTGCATTTGCCTCGGGTGTCATCTCTTCCACCA TCGGAAATGATGGTTCTTTGTGGGTGTGGGGGAAGTCCAAGAGGGGGCAACTTGGTCTAGGTCCGGGGATCACAGAGGCAGTAGTCCCCTCCAGAGTTCC TAAACTTGCAGGAGAAAATATAGCTAAGGTCTCATTTGGATGGGGTCATGCTCTTGCAAAAACTGTAGATGGCAAACTATATGGCTGGGGCTATTCGGCC GATGGTAGGATAGGAGAGATCGGTGGGTTTGTGGAGGCGTCTGTGCTGGATTCAGCAGGAGCAGCGAACTCTCAAGGCGGCAACCAATTCGAAGCAGCAG AAAGGCGAGTCTTGGAAGGAATGGCAAAGGAAAAGGACATGCCCATAGTATGGGAGCCATGTCTAGTCGAAGAACTGGACGAAACTCGAGTTGTAGACAT TGCTTGCGGACTTGATCATTCCTTGGTCCTTTGCAGTGATGGCAAGCTGTTAACCTCAGGAAGCAACATATACGGTCAGTTAGGCAGAGAAAATCAAGCT ATGGGATTCTTTCCAGCTGGCCTTGCCCTCCACACTTCGCATATAGCATCAGGCCTCGGCCATTCTTTAGCAATTTGCAACTCTTCCGGAAGAAGTCCTA TCTTGTCGTGGGGATGGAACGGAAGTTCGCAGCTTGGAAGGACGGGAAACGAGAAGAGACCATCAGAGGTCGAGGGAATCTCCGAGGAGAGAGCTATATC AGTTTCGGCAGGGCGAGTTCATTCTTTGGCCGTGACATGTGAAGGTCAGCTGTGGGTTTGGGGATGCGGTAAGAATGGCAGACTTGGGTTGGGGAGCCCT TATGATGAACAGGAGCCGATTCTGGTGGATAGTTTGGAAGGTTGTAAAGTGATGCAAGCTGTTGCAGGGAACCAGGGAAACTTCACTTCCGTGCTACATA TAAATCCGGCAAGCATGAGAACTGCAGGCAGGGCATTGGGTGTCTCGAGCTTCGCTTCGTACTTTGCAAACAACAACAAAACCAGCATCTTGTCATCGTC TTCCTGCTCCCTCATTCCTGCGCAGATGGTTAGCAAGTCCGTGACACTGAGAACAACCATCACCTGCTGTTCTGCAGTGCAAGAATCATCATCGTCCACT GCAACTTCCACAGAAGAAGAAAAGCCAAAGCCGAAGCCAAAACCAGCAGCTAAGGCTCCAGTCAAGCCATTGCCGCAGTTGATGGAAGAGGAAGTTATCC CTTTACTGAAATCGACTCTTGAAGTCCAAGATGACATCTCCGAGCTTCAGCTATCTTTCCAAGACAACATATTGGAAGGTTCCTTTGTGAATAAGGATAT TCCCTATTCTTTCTGGGCATTTTTCCCTGATGGAGTACTCACAGGCATGAACTATACCACAGATTCTCCTCAGTACAAGCAACAGTCACTGCTGGCTAAC TGA
AA sequence Show only first row Show all	>Lus10016075 pacid=23154353 polypeptide=Lus10016075 locus=Lus10016075.g ID=Lus10016075.BGIv1.0 annot-version=v1.0 MLRRICTILKKDRSLLQQTARFSTTTNNGAADTSRYGVVMSFGDGNHGALGLPPSLTGIGADVYEPTVIPGFPSDITSVAAGHYHSLASHLSWRSMGMGP QRRSSTWPRRSCPQSLDQVHVTAAFASGVISSTIGNDGSLWVWGKSKRGQLGLGPGITEAVVPSRVPKLAGENIAKVSFGWGHALAKTVDGKLYGWGYSA DGRIGEIGGFVEASVLDSAGAANSQGGNQFEAAERRVLEGMAKEKDMPIVWEPCLVEELDETRVVDIACGLDHSLVLCSDGKLLTSGSNIYGQLGRENQA MGFFPAGLALHTSHIASGLGHSLAICNSSGRSPILSWGWNGSSQLGRTGNEKRPSEVEGISEERAISVSAGRVHSLAVTCEGQLWVWGCGKNGRLGLGSP YDEQEPILVDSLEGCKVMQAVAGNQGNFTSVLHINPASMRTAGRALGVSSFASYFANNNKTSILSSSSCSLIPAQMVSKSVTLRTTITCCSAVQESSSST ATSTEEEKPKPKPKPAAKAPVKPLPQLMEEEVIPLLKSTLEVQDDISELQLSFQDNILEGSFVNKDIPYSFWAFFPDGVLTGMNYTTDSPQYKQQSLLAN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48330		RUG2	RCC1/UVR8/GEF-like 2, Regulato...		Lus10016075 [exp]	0	1
AT3G02850		SKOR	STELAR K+ outward rectifier, S...		Lus10037694 [exp]	2.4	0.8690
AT2G23580		ATMES4, ABE4	ARABIDOPSIS THALIANA METHYL ES...		Lus10009205 [exp]	3.2	0.8722
AT2G20830			transferases;folic acid bindin...		Lus10018558 [exp]	5.3	0.8616
AT5G48330		RUG2	RCC1/UVR8/GEF-like 2, Regulato...		Lus10012298 [exp]	6.5	0.8678
AT1G54490		ATXRN4, XRN4, E...	ETHYLENE INSENSITIVE 5, ACC IN...		Lus10019004 [exp]	19.0	0.7804
AT4G36530			alpha/beta-Hydrolases superfam...		Lus10041763 [exp]	20.0	0.8539
AT1G66840		PMI2, WEB2	WEAK CHLOROPLAST MOVEMENT UNDE...		Lus10017614 [exp]	21.4	0.8603
AT2G21280		GC1, ATSULA	GIANT CHLOROPLAST 1, NAD(P)-bi...		Lus10018055 [exp]	25.6	0.8516
AT5G17670			alpha/beta-Hydrolases superfam...		Lus10005666 [exp]	28.7	0.8516
AT5G21430		NdhU, CRRL	NADH dehydrogenase-like comple...		Lus10027616 [exp]	35.4	0.8567

Compare expression of checked genes

Lus10016075 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.