Plant FIBer expression Database

Lus10016076 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G07580 92 / 2e-23 unknown protein
AT5G48335 79 / 8e-19 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10012299
[exp]
259 / 2e-88 AT3G07580 96 / 2e-25 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G172600
[exp]
169 / 7e-53 AT3G07580 105 / 4e-29 unknown protein
PFAM info
Representative CDS sequence
>Lus10016076 pacid=23154389 polypeptide=Lus10016076 locus=Lus10016076.g ID=Lus10016076.BGIv1.0 annot-version=v1.0
ATGGAACAATGTCCTAAGTGCAAAATCATTGGTCAAAACAAGCGTGTTAGAAAGGAGACCATATTTGGTAGAAAGAAAGCCGAAGAAGCGAAGCAGAGTC
GTCTGGATCCGGCCATCCAGTCTTTCTCCTGCGGCTGCGCCGGTGTCGGTACTCTGTCCGAATCAGACGACCAATCATTAGAAAATAGTTTGAAAATCAA
GACGAGATGCTGGAAAACCCTACCCCTGCACCTCCTTCAGACCCCTCCGTCAAGCGATATGCTCCTCCCAATCAAAGGCTCGAACCGGTCTCTCAATAGG
CGCAAATCAGGAGATCGAATTGATCGCTTTGGCAGTCTATATGCAAATGATGGAGACAGAAGCCAAACGCATTCCTCTTCAAGAAGTATCCCTGGCATAG
ATCATGGAGATGCTGGAATCCAAAACCTTCAGAATCAGAACTCGCGGGTTGCTTTAGTAGCTTTAGAAGGATGCCGTCACAGCGATGCTTCTCAACTTTT
GAATGATCGTTGGGCTACAGTGATGCATATCTACAATGATCCTGCGATAGATTTATCTGAAAGACCAGTTCTTTTTTCCGGCAGTGTATCAGCATGGGGA
CAGTTTAAGCTTCCGCATCAGATGATGGCTGCAGCAAACAGTGTAGGACCTTCTGGTACTCAGATGGATTTCCTAGGTGAACTTCATCGAGCAATGTACA
AGGCCAATGCCGGTTCCAACAACTAA
AA sequence
>Lus10016076 pacid=23154389 polypeptide=Lus10016076 locus=Lus10016076.g ID=Lus10016076.BGIv1.0 annot-version=v1.0
MEQCPKCKIIGQNKRVRKETIFGRKKAEEAKQSRLDPAIQSFSCGCAGVGTLSESDDQSLENSLKIKTRCWKTLPLHLLQTPPSSDMLLPIKGSNRSLNR
RKSGDRIDRFGSLYANDGDRSQTHSSSRSIPGIDHGDAGIQNLQNQNSRVALVALEGCRHSDASQLLNDRWATVMHIYNDPAIDLSERPVLFSGSVSAWG
QFKLPHQMMAAANSVGPSGTQMDFLGELHRAMYKANAGSNN

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G07580 unknown protein Lus10016076
[exp]
0 1
AT5G23090 CCAAT NF-YB13 "nuclear factor Y, subunit B13... Lus10038952
[exp]
1.4 0.9709
AT5G23090 CCAAT NF-YB13 "nuclear factor Y, subunit B13... Lus10027242
[exp]
2.4 0.9667
AT1G64230 UBC28 ubiquitin-conjugating enzyme 2... Lus10014187
[exp]
2.8 0.9652
AT5G55530 Calcium-dependent lipid-bindin... Lus10016592
[exp]
3.0 0.9543
AT3G07580 unknown protein Lus10012299
[exp]
3.5 0.9512
AT2G32090 Lactoylglutathione lyase / gly... Lus10006122
[exp]
7.4 0.9517
AT2G44420 protein N-terminal asparagine ... Lus10020880
[exp]
7.9 0.9559
AT1G13450 Trihelix GT-1 GT-1, Homeodomain-like superfa... Lus10036978
[exp]
8.9 0.9698
AT2G37150 RING/U-box superfamily protein... Lus10023507
[exp]
9.2 0.9572
AT4G08240 unknown protein Lus10014834
[exp]
9.6 0.9417

Lus10016076 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.