Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57220 553 / 0 Glycosyl transferase family 4 protein (.1) AT2G41490 548 / 0 GPT UDP-glcnac-adolichol phosphate glcnac-1-p-transferase (.1) AT3G25530 387 / 4e-131 GR1, GLYR1, GHBDH, ATGHBDH glyoxylate reductase 1 (.1.2) AT1G17650 259 / 2e-80 GR2, GLYR2 glyoxylate reductase 2 (.1) AT4G29120 107 / 3e-25 6-phosphogluconate dehydrogenase family protein (.1) AT4G20930 88 / 2e-18 6-phosphogluconate dehydrogenase family protein (.1) AT1G18270 83 / 5e-16 ketose-bisphosphate aldolase class-II family protein (.1.2.3) AT1G71170 76 / 1e-14 6-phosphogluconate dehydrogenase family protein (.1) AT1G71180 71 / 5e-13 6-phosphogluconate dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012300 [exp] 595 / 0 AT2G41490 542 / 0.0 UDP-glcnac-adolichol phosphate glcnac-1-p-transferase (.1) Lus10012301 [exp] 428 / 2e-147 AT3G25530 434 / 3e-155 glyoxylate reductase 1 (.1.2) Lus10037629 [exp] 254 / 1e-78 AT1G17650 486 / 9e-174 glyoxylate reductase 2 (.1) Lus10015612 [exp] 258 / 1e-76 AT1G17650 495 / 4e-172 glyoxylate reductase 2 (.1) Lus10001349 [exp] 95 / 4e-21 AT1G71180 335 / 4e-115 6-phosphogluconate dehydrogenase family protein (.1) Lus10012950 [exp] 86 / 2e-18 AT4G29120 456 / 3e-163 6-phosphogluconate dehydrogenase family protein (.1) Lus10023258 [exp] 81 / 4e-16 AT4G20930 479 / 4e-171 6-phosphogluconate dehydrogenase family protein (.1) Lus10038545 [exp] 78 / 3e-15 AT4G20930 451 / 3e-160 6-phosphogluconate dehydrogenase family protein (.1) Lus10002140 [exp] 71 / 3e-12 AT1G18270 1147 / 0.0 ketose-bisphosphate aldolase class-II family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G042100 [exp] 585 / 0 AT2G41490 562 / 0.0 UDP-glcnac-adolichol phosphate glcnac-1-p-transferase (.1) Potri.006G045700 [exp] 558 / 0 AT3G57220 566 / 0.0 Glycosyl transferase family 4 protein (.1) Potri.014G197900 [exp] 427 / 2e-146 AT3G25530 463 / 1e-166 glyoxylate reductase 1 (.1.2) Potri.003G040800 [exp] 254 / 2e-78 AT1G17650 508 / 0.0 glyoxylate reductase 2 (.1) Potri.003G038450 [exp] 147 / 2e-41 AT1G17650 217 / 8e-71 glyoxylate reductase 2 (.1) Potri.003G036600 [exp] 111 / 4e-29 AT1G17650 158 / 5e-49 glyoxylate reductase 2 (.1) Potri.018G088000 [exp] 106 / 8e-25 AT4G29120 463 / 8e-165 6-phosphogluconate dehydrogenase family protein (.1) Potri.001G211500 [exp] 91 / 6e-20 AT1G71180 310 / 2e-105 6-phosphogluconate dehydrogenase family protein (.1) Potri.015G037000 [exp] 79 / 1e-14 AT1G18270 1931 / 0.0 ketose-bisphosphate aldolase class-II family protein (.1.2.3) Potri.001G465600 [exp] 74 / 5e-14 AT4G20930 507 / 0.0 6-phosphogluconate dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00953 [flax] [poplar] Glycos_transf_4 Glycosyl transferase family 4 CL0063 [flax] [poplar] NADP_Rossmann PF03446 [flax] [poplar] NAD_binding_2 NAD binding domain of 6-phosphogluconate dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10016077 pacid=23154419 polypeptide=Lus10016077 locus=Lus10016077.g ID=Lus10016077.BGIv1.0 annot-version=v1.0 ATGACTGCTCGGAAGAGAGCTTCAGCAAAGGTAGCGAGTGGCAATGCATCCACTGTTAAAGCTGTGGTCTCCAACGGTGGTGATCGTAAACCCAAGGAAG TTGTTTCAGACCCACCAATTGCACCTCCCAAATTGGTTTTCATCTTGAAGCTGTCTCTCTTGCTTTTAGCACCTTACTGCTACGTCTTCTTCTACCACTA CAAGATCCACCAAGAGCTCCAGACTCCGATCCTTATCAATGCTGCTCTTAGCGTTGCTGGATTCTTTCTCACAGTCAGGCTGATCCCTGTGGCCTCTAGA TATGTGTCCAGGAGGAATATGTTTGGCTATGATATCAACAAGAAGGGTACTCCTCAAGGCACTGTTAAAGTGCCAGAATCATTGGGTATTGTTGTTGCGA TAGTCTTCTTGGTGGTGACAATCGTATTCCAATACTTCAACTTCACTGCGGATTCAATTTGGCTTGTTGAATACAATGCGGCGTTAGCATGCATCTGCTT CATGACTCTGCTAGGTTTTGTTGATGATGTCCTTGATATTCCTTGGAGAGTGAAATTAATCTTACCCTCATTTGCTGCACTCCCGTTGTTAATGGCATAT GCTGGGCATACAACTATTGTCATACCAAAGCCTCTAATCCAATATGTTGGACTGGAGATATTGGACCTAGGCTGGATATATAAGCTATATATGGGACTTT TGGCTGTTTTCTGCACAAATTCTATTAACATTCATGCGGGTTTAAATGGGCTTGAAGTTGGACAGACGGTTGTGATCGCATCTGCTATTTTGGTACACAA TATCATGCAAATTGGAGCATCAAATGATCCTGAGAAGCAACAAGCCCACGCCTTCTCTATTTATCTAGTTCAACCGTTACTAGCAACCTCCTTGGCTTTA CTATCTTACAATTGGTACCCTTCTTCCGTTTTTGTTGGGGATACCTACACATACTTCGCCGGAATGACTATGGCTGTTGTCGGTATATTGGGTCATTATA GTGAAACACTGTTGATTTTCTTTTTGCCACAAGTGATAAACTTTTTGTTATCTCTCCCCCAGCTGGCTGGTATTGTACCTTGTCCAAGGCATCGTCTTCC TAGGTTTGATCCCGACACTGGATTGCTTACTGGGACTAAGGACGGAACGCTTGTCAATCTGTACTTGAGAATCTTCGGGAGGAAGAAAGAAAATTCTCTA TGTGCCCATCTTCTTCTTGTTCAGTGTGATGAATTGGTTGAGATGGGTGCATCGGTTGGAGAAACACCAGCTGCTGTGATCAAGAAGTGTAAGATCACCA TAGCTATGGTTTCAGATCCTGCAGCTGCTCTCTCAGTGGTGTTTGATAAAAATGGGGTATTGGAGGAGATATGCAGTGGGAAAGGCTACGTAGACATGTC AACTGTGGATCCCGAGACTTCTACCAAGATCAGTGAGGCAATTACGTCAAAAGGTGGCTCCTTTGTAGAGGCTCCTGTTTCGGGAAGCAAGCAACCTGCA GAAGCTGCACAGCTCGTCATTCTTGCTGCCGGAGATAACGCACTTTATGATGAAGTGATTCCAGCTCTGAATGCAATGGGGAAGAAGTCATTCTTTTTGG GCCAGGTTGGAAATGGAGCAAGAATGAAACTTGTTGTTAACATGATCATGGGAAGTATGATGAACGCATTTTCGGAGGGTCTGGTGTTGGCTGAAAGGAG TGGACTGAACCCTGCTGATCTGCTTGATGTTCTGGATCTTGGTGCCATAGCGGCTCCAATGTTCAAAGGGAAGGGACCGAACATGATGAAGAGTAGTCAT TCACCTGCATTCCCTCTGAAGCATCAGCAAAAGGACATGAGGCTGGCTTTAGCGCTTGGAGATGAGAATGCTGTGTCAATGCCTGTAGCTGCTGCAGCAA ATGAGGCATTCAAGAAGGCAAGGAGCATGGGTTTAGGTGATCTTGATTTTTCAGCCGTGCACGAGGTTGTGAAGATGCATAAGGACTGA
AA sequence Show only first row Show all	>Lus10016077 pacid=23154419 polypeptide=Lus10016077 locus=Lus10016077.g ID=Lus10016077.BGIv1.0 annot-version=v1.0 MTARKRASAKVASGNASTVKAVVSNGGDRKPKEVVSDPPIAPPKLVFILKLSLLLLAPYCYVFFYHYKIHQELQTPILINAALSVAGFFLTVRLIPVASR YVSRRNMFGYDINKKGTPQGTVKVPESLGIVVAIVFLVVTIVFQYFNFTADSIWLVEYNAALACICFMTLLGFVDDVLDIPWRVKLILPSFAALPLLMAY AGHTTIVIPKPLIQYVGLEILDLGWIYKLYMGLLAVFCTNSINIHAGLNGLEVGQTVVIASAILVHNIMQIGASNDPEKQQAHAFSIYLVQPLLATSLAL LSYNWYPSSVFVGDTYTYFAGMTMAVVGILGHYSETLLIFFLPQVINFLLSLPQLAGIVPCPRHRLPRFDPDTGLLTGTKDGTLVNLYLRIFGRKKENSL CAHLLLVQCDELVEMGASVGETPAAVIKKCKITIAMVSDPAAALSVVFDKNGVLEEICSGKGYVDMSTVDPETSTKISEAITSKGGSFVEAPVSGSKQPA EAAQLVILAAGDNALYDEVIPALNAMGKKSFFLGQVGNGARMKLVVNMIMGSMMNAFSEGLVLAERSGLNPADLLDVLDLGAIAAPMFKGKGPNMMKSSH SPAFPLKHQQKDMRLALALGDENAVSMPVAAAANEAFKKARSMGLGDLDFSAVHEVVKMHKD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57220			Glycosyl transferase family 4 ...		Lus10016077 [exp]	0	1
AT1G10660			unknown protein		Lus10029133 [exp]	3.0	0.8904
AT4G14210		PDE226, PDS3	PIGMENT DEFECTIVE 226, phytoen...		Lus10024003 [exp]	7.7	0.8636
AT1G45230			Protein of unknown function (D...		Lus10009756 [exp]	14.2	0.8880
AT2G03420			unknown protein		Lus10036810 [exp]	16.0	0.8840
AT3G25530		GR1, GLYR1, GHB...	glyoxylate reductase 1 (.1.2)		Lus10012301 [exp]	16.6	0.8163
AT1G12250			Pentapeptide repeat-containing...		Lus10024602 [exp]	17.8	0.8793
AT3G18870			Mitochondrial transcription te...		Lus10042342 [exp]	20.8	0.8600
AT5G50130			NAD(P)-binding Rossmann-fold s...		Lus10018092 [exp]	21.7	0.8116
					Lus10001769 [exp]	22.0	0.8538
AT5G59610			Chaperone DnaJ-domain superfam...		Lus10040777 [exp]	23.5	0.8394

Compare expression of checked genes

Lus10016077 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.