Lus10016078 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G12750 678 / 0 Homeodomain-like transcriptional regulator (.1)
AT4G12770 272 / 1e-75 Chaperone DnaJ-domain superfamily protein (.1.2)
AT4G12780 268 / 2e-74 Chaperone DnaJ-domain superfamily protein (.1.2)
AT1G21660 199 / 3e-54 Chaperone DnaJ-domain superfamily protein (.1)
AT4G36520 188 / 1e-47 Chaperone DnaJ-domain superfamily protein (.1)
AT1G75310 173 / 4e-43 AUL1 auxilin-like 1, auxin-like 1 protein (.1)
AT1G28420 150 / 5e-36 HD HB-1 homeobox-1 (.1)
AT5G44180 145 / 2e-34 HD Homeodomain-like transcriptional regulator (.1.2)
AT1G75100 119 / 4e-27 JAC1 J-domain protein required for chloroplast accumulation response 1 (.1)
AT1G30280 84 / 3e-16 Chaperone DnaJ-domain superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10012302 2117 / 0 AT4G12750 911 / 0.0 Homeodomain-like transcriptional regulator (.1)
Lus10012303 457 / 8e-139 AT4G12770 618 / 0.0 Chaperone DnaJ-domain superfamily protein (.1.2)
Lus10016079 427 / 3e-128 AT4G12770 664 / 0.0 Chaperone DnaJ-domain superfamily protein (.1.2)
Lus10018854 227 / 1e-62 AT1G21660 402 / 5e-134 Chaperone DnaJ-domain superfamily protein (.1)
Lus10028548 222 / 9e-61 AT1G21660 402 / 1e-133 Chaperone DnaJ-domain superfamily protein (.1)
Lus10041769 186 / 1e-46 AT1G75310 328 / 3e-92 auxilin-like 1, auxin-like 1 protein (.1)
Lus10015325 182 / 1e-45 AT1G28420 1273 / 0.0 homeobox-1 (.1)
Lus10025454 180 / 7e-45 AT1G28420 1275 / 0.0 homeobox-1 (.1)
Lus10018634 165 / 2e-40 AT5G44180 1391 / 0.0 Homeodomain-like transcriptional regulator (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G173300 1033 / 0 AT4G12750 1038 / 0.0 Homeodomain-like transcriptional regulator (.1)
Potri.014G197600 309 / 3e-87 AT4G12780 329 / 1e-97 Chaperone DnaJ-domain superfamily protein (.1.2)
Potri.002G217200 299 / 5e-84 AT4G12780 319 / 2e-94 Chaperone DnaJ-domain superfamily protein (.1.2)
Potri.002G079200 223 / 5e-62 AT1G21660 351 / 2e-115 Chaperone DnaJ-domain superfamily protein (.1)
Potri.005G181700 210 / 9e-58 AT1G21660 312 / 3e-100 Chaperone DnaJ-domain superfamily protein (.1)
Potri.005G120700 194 / 1e-49 AT4G36520 299 / 1e-82 Chaperone DnaJ-domain superfamily protein (.1)
Potri.011G057700 189 / 6e-48 AT1G28420 1262 / 0.0 homeobox-1 (.1)
Potri.007G022600 189 / 8e-48 AT4G36520 306 / 7e-85 Chaperone DnaJ-domain superfamily protein (.1)
Potri.004G048675 182 / 1e-45 AT1G28420 1266 / 0.0 homeobox-1 (.1)
Potri.005G229300 178 / 1e-44 AT4G36520 248 / 1e-66 Chaperone DnaJ-domain superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0123 HTH PF00046 Homeodomain Homeodomain
Representative CDS sequence
>Lus10016078 pacid=23154433 polypeptide=Lus10016078 locus=Lus10016078.g ID=Lus10016078.BGIv1.0 annot-version=v1.0
ATGAACAGCTCGGCATTTGATGATCTGTTGGGAAATTTGGGGAAGAAGGGGGCAGAATCTCGGAGGGAGGCTCCAAAGTTGGAGAAAGATTCTCCTGCAT
TTGATGATCTACTTCCTGGTTTTGGTCGCAGTAGCTCTCCCAGCGAAGATCGGTGGATATTTTTGAATCTCCGTTGCTCCGCATTGATAATATTGGAAGA
GGATTCGTCTTACAGGTCAGCATCCGAGTCCAGTCCGGCCACTAGACCAAATGCTAGTTCGGTCAAGACAACTCCTACTACAATTGATGATCCCTTTGTA
GTGTTAGAGTCAACATCAGCTCATGCAACAAAACCATCATCGGAGTCATTTCCAGATCCATTAGATGAGATTGGTAGATTCAATAGTTCAGGGAGCACAA
ACGTTGATAATTCACATGTCCACAGGGGATCGTTTGATGACTTAGATCCTCTTGACAATCTGTCAAAGTCTGTTCCATTGGCTTCAAGCAAGGTTAATGA
GAGAGGAAAGGAGAGGAGCCCCTTAAGATCAGGAGCTGATAAGGGCGGGACTTTTTCTCCTGCTAGTCGGGATCCGGTTGACAGATATCCAGTGGAGAAT
TCAGGGAGAGACTCACAGCACAATCAGCCCTTTGATGGTTTCCAGGAAACTCCTTTTGGCATGGCCCCTGGCCCCAGAGTTGCTAGTAAACCAGCTACTG
CTCCACCATCATATACCAACGTCTCTGCTAATGATGCATTTTCCTCCCCGGTATCTGAAGAGGTCTCAGAATCAGCTGATGAAATATGGCTCACTGTTTC
AGAAATTCCTTTGTTTACTAAACCAACAAGTGCTCCCCCGCCTTCAAGGCCTCCACCTCCAAGACCACCACGTTTGAGTGCACGAAAGAGGTTTAATGAA
CAGTCTTTCTCGAACTCTCGAAGTCCTAGTTCAGCTCAAGCACCAAGAAGCTCAGCGTCTCAATTTGATGAACTTGACGATTTTGCGACGGGTCGGACCC
AAAGTAATGTAAATGATCGTGCTGATAGTTCTGCTGGTGAAGAGGAGGACACAGACTCTTCTGCTGCTGCATCTGCAGCTGCAATGAAGGATGCTATGGA
TAAAGCTGAAGCTAAAATCAGGCACATGAGGGAGAGAGATTATATAAAGGCTTCCAGAAGTAAAGAGTCCACTCAGGTAGACAGAGATGTGCTAGAAGCT
GAGCAACGAGAACTAAGGGAAAGGCAAGAGAGGTTAGACCGTGATAGACAACAGAGTCAGAGGGAGGCGGAAGAACGAGAACAGATTAGACTTCGTGAAT
TAGAGAGGGAGAGGGAAGAAAAGGAGAGAGAGCAGAAGAGACAGGAGAGAGAAAGGGAGCGAGTTGAAAGGGACAGAGCTAGACAAGCAGTTGAAAGGGC
CAATAGAGAGGCACGCGAAAGAGCTGCCGCTGATGCTCGGGTACGAGCTGAAAGGGCTGCAGCAGGAAAGGCAAGTGCTGAAGCACGAGAAAGAGCCGAA
AGAGCTGCAGTTCAGAGGGCACAAGCCGAAGCTCGTGAGAGAGCAGCAGCAGAAGCTAAGGAAAGAGCAGAAAGAGCAGCAGCCGAAGCACGAGAAAGGG
CAAATGCTGGGGCAAGGGAGAAGGAAATGGATGCCCGAGCTAGAGCAGATCGTGCTGCCGTTGAAAGAGCCGCTGCAGAAGCTCGTGAAAGGGCTGCTGC
TGCAGCTAGGGCAAACCAGCAAAAATATGAGGCGCAGCCAAAAAATGAAAATGATCTTGAATCGTTCTTCAGTTCTCGTCCGAGCAGTGCCCCACGTCCC
CGAGCAACAAGTTCTGATCCATTCTTTGATACTGCTAACAAGGGAGCCCCTGAAGTCCCTAAAAGTACCTCTGTTGGTTCTACATCTAACATGAGAAAAG
CATCTTCAGCCACAAACATAGTCGATGATCTTTCTTCAATTTTTGGAGCTGCCGGAACTGGAAAATCTGGAGATTTCCAGGACATTGCAGGGGAAACTGA
AGAAAGACGAAGAGCCAGGTTGGAACGCCATCAAAGAACTCAGGAGCGTGCGGCAAAAGCATTGGCCGAGAAGAATCAGCGTGACCTTAATGCTCAGATG
GAGCAAGAAGAGAGACATAGGATTGCTGAAACTCTGGATTTTGAAATCAAGCGTTGGTCTGCTGGGAAAGAGGGGAATCTGCGTGCTCTATTATCAACAC
TGCAATACGTATTGTGGCCTGAGTGTGGGTGGCAGCCGGTTTCCTTGACAGACCTGATTACTGCTGCATCTGTCAAAAAAGTATACAGAAAAGCAACGTT
ATGCATTCACCCTGATAAAGTGCAACAGAAAGGCGCCAATCTTCAACAAAAATACATAGCCGAGAAAGTCTTTGACATGCTGAAGTGTTCTGCACCGACA
ATGTTATGGTATTGTGTATGTTTCCATTTCTCGTCTAATTCTTCTGGACCCGGGGAAAACACTAGACTGTGTGGGAAGCTCATTTGGGTTAGCTGGAAAG
TGCTGATTATAGCGAGGAGAGACTGTGCAGTTGGAGCAATGGGATTGAAGAGGAAATCGCCGCAGCAGCTTGAAGTTCTCCGGGAATTCTTTGCTAATGA
AGAGTATCCTACAAACAGTGATATGGAAGGGCTTGCTGAGGTCCTTGGCCTAACTCTTGGCCAGGTCCGGGTGTGGTTTGTTGAGAAGCGGAGGAGGGAG
AAAAGGAAGATACAGGCATCAACCCCACTTCAGAGCAAGAAACAATGTCTTGTCGGAGAAGGAAATCAAACTGCTATTGCTTCTTCCGCTGGAAAGGTGC
TAACACAGCAGAGAGCATTGAGTCGTGACATGAGTAAATCTAGCAGTAGTTTGTCTTCGGAAGTTGAAAACGGGATTAGTGAGAGGTCACTGGCTCGTGT
TCAGAAGTTGCTTCCTTCTGAATATATCCCGAGCAAGATTTTCCGCAAAGATGGGCCTTCTTTGGGTGTGGAATTTGACTCTGTTCCATCCGGGGGATTC
CATGCTGTTGAAGATTCTAGAAAGTCTATCTCTGGTTCCGAGGATGACGAAACAGCAGAGGAAAAAAGAAAGGTACTGCACATAAACCCTCAGAGTGGCG
TTTACCAACCAAACGTCTATTCTACTTGTCTTCGTCAATCATATGTGATTTACACTGCTGGGTTTTTTGTATCCCAGCACGTCCGGGATTGTACTTTGAG
TGCAATGGTGAAGAAACATGGTATGGGCAAAGGCGTGATGACAAAGGTACTGGAGAACATCAGGATACTTTTGAGAGTTCAGGATTATAGTGTAAGTGCA
TGCATGGAGAAACATGGAATGGGAAAGGGCTTAATGACAGCACGGCAGGCCATAAATCCAAATTGTGGAGACGTTTCGAGTGATATTCATTTTTCTGATG
GACGAAACACTAGCACACTTGAAATCCCAACCCCTGACTCAAGCAAACTTCGGTGTCAGAAGAGGAAACGACAATCTGTGATGGCGCAATCTAAAGGCGA
AGAGACTGAGAAGCAGCTCTTTAGGGAAAAATGTGAACTTGCACTGGATGGAAGGATAGCACAAAAAAGTCTTGCTGAAGTTGAACTGTTAATGGATGAT
GAAGAGGTTGAGATGCGAGAGTTACATGCAGGACCAAATCCATTATCATGTTCAGAACATTGTTCTGATAATGGATTGCATAGTTGTCCTTTATGCAAAG
TTACTATGAAAATATGCTCCTTCACGTTGGATGCTTTTGCTCAAGCCTTTCATGACAAGGTTGAAGGTCAAGAGCTTCTTGTCAATATCTGGAAGAGTTC
TCTCAATCCACTGACCTGGACAGAAATTTTGAGGCAAGTACTGGTTGCAGCAGGATTGGGTTCGAAGCAAGGTGCATCTAGGAGGCAAGCCCTTAGCAAG
GAGATGAGAATTATGTTAAAGTACGGCCTTACTCCTGGAACTTTGAAGGGAAAATTGTTCAGACTTATGTTTCAGAAAGGAAATCACGGAATTAAAGTTT
CTGAGCTAGCGAAGTCTACAGAGGTTGTTGAATTGAATCTTGCCAACACAACAGAAGAGCGGGAACTTTTGATAAGTTCAACTCTCTCAAGTGACATTAC
TTTATTTGAAAAGATATCATTGTCTGCTTATCGTCTGCGTGTTAGTAGCCTCTTGAAGGAGGACGGCACGTTTCAGTCAGAGAGTGAGGACTCTGGAAGC
ATTCATGACGACTTCAATGATGCTGGCATGTGTAGCAGTAGTGATTCCGAGTGCGAGACGGAAAGTTCCAGTCAGAGAAAGCTTATGCCTCTCAAATGTA
ATACAAGTAAAAGTAACATGTTTAAAATACATAATGAAATCGATGAGAGCAATCCTGGGGAAGCGTGGCTGTTGGGTCTAATGGATGGCGAGTATTCTGA
TTTAAGCATCGAAGAGAAACTAAATCTCTTGGTTGCTTTAGTTGACTTAGTAAGTGCTGGATCTAGCATTAGAATGGAGGTAATGCTCATCGCCTTGGGT
GCATTTTATCAAGATCCTGTGAGACCTGCCTTCGGAACTGTTCCTAACTTGCAACGCTATGGTTCTGGAGGAAAAATAAAGAGATCGTCATTACACAGGC
CATCCTGGGTTCACGGGAAACAGATTTTTGACCCAAACATAACAAGTTCATTGTCCAAGTCTCAGCCTGTTGATTCATCTGTGTCAATCTGTAAGCTTAA
TCCAGAGGATAAATCATCTGGTACGGGAACAGATGCAAAGGAAACTGAAGCTGGAGCATGCCTGCACCATATGCAGTCTGTATTTTTGGGTTCTGATCGT
AGGTACAATAGATATTGGCTTTTCTTGGGTCCTTGTGATTTTCATGACCCAGGTCACAAGAGAGTTTATTTTGAATCGTCTGAAGATGGTAACTGGAAAG
TGGTTGATACAGCAGAGGCTTTCCGCTCCTTATTATCAGTCTTAGATAACAGGGGGAGGAGAGAAGCTCATCTGATTGAATCATTGGAGAAACGAGAAAC
TTTTCTATGCCATGAGATGTCGACTGTATTGGTGAATGATGCTGCCAGCTGTCACTCATCACAACCTATTCTGTCTGAGTTATCGGTTAGGGAAGACAGC
TCGTCGCCGATTTCTGATGTAGATAACAACTTAAGCTTAACAGAGACGACCAATGACTCCTTGCCTCGATGCAGTGCAATAGTTCTTGATGCAGAAAGAA
ATCTGGAAGAACAGAACCCAAGACGGAGTCGTCTACAACAGTTTGATGCTTGGATATGGAGTCATTTCTATTGCGGTCTCAATGCCGTGAAACATAATAA
AAGATCTTATTTTGAATCATTGAGTAGATGTCAGACCTGTCATGACCTATACTGGAGAGATGAGAAGCATTGTAGGATTTGCCACTCAACATTTGAGGTT
GATTTTGATCTAGAAGAGAAGTATGCAGTCCATACAGCCACATGTAGACTGAAAGCAGAAAATGGAAAGCTCCCTCAATACAAAGTCCTGCCGTCAGTAT
TGCAGACATTAAAAGCTGGCGTCCACGCAATTGAGTCAGCTATGCCTGAAGGGGCTTTGGTAGGTGCTTGGACGAAGTCCGCTCATAGGTTATGGGTTAA
ACGGCTCAGACGTACCTCCTCATTGGCAGAGCTTTTGCGGGTTGTCACTGATTTTGTCGCTGCTATTAACGAGGATTGGTTGTGTCAATACAATGATGCT
CCAGGCTTTAATCCTTTTGCAGAAGCGATTGTGGCATGCTTTTCAAGTATGCCTCAAACATCATCCGCACTTGCCTTGTGGTTGGTAAAATTGGATGGCT
TAATTTTGCAGCATTTAGAAAATTCTCAATGTGAAGAGAATCATGAATCAGCAGAAGTGATCAGGTACTGA
AA sequence
>Lus10016078 pacid=23154433 polypeptide=Lus10016078 locus=Lus10016078.g ID=Lus10016078.BGIv1.0 annot-version=v1.0
MNSSAFDDLLGNLGKKGAESRREAPKLEKDSPAFDDLLPGFGRSSSPSEDRWIFLNLRCSALIILEEDSSYRSASESSPATRPNASSVKTTPTTIDDPFV
VLESTSAHATKPSSESFPDPLDEIGRFNSSGSTNVDNSHVHRGSFDDLDPLDNLSKSVPLASSKVNERGKERSPLRSGADKGGTFSPASRDPVDRYPVEN
SGRDSQHNQPFDGFQETPFGMAPGPRVASKPATAPPSYTNVSANDAFSSPVSEEVSESADEIWLTVSEIPLFTKPTSAPPPSRPPPPRPPRLSARKRFNE
QSFSNSRSPSSAQAPRSSASQFDELDDFATGRTQSNVNDRADSSAGEEEDTDSSAAASAAAMKDAMDKAEAKIRHMRERDYIKASRSKESTQVDRDVLEA
EQRELRERQERLDRDRQQSQREAEEREQIRLRELEREREEKEREQKRQERERERVERDRARQAVERANREARERAAADARVRAERAAAGKASAEARERAE
RAAVQRAQAEARERAAAEAKERAERAAAEARERANAGAREKEMDARARADRAAVERAAAEARERAAAAARANQQKYEAQPKNENDLESFFSSRPSSAPRP
RATSSDPFFDTANKGAPEVPKSTSVGSTSNMRKASSATNIVDDLSSIFGAAGTGKSGDFQDIAGETEERRRARLERHQRTQERAAKALAEKNQRDLNAQM
EQEERHRIAETLDFEIKRWSAGKEGNLRALLSTLQYVLWPECGWQPVSLTDLITAASVKKVYRKATLCIHPDKVQQKGANLQQKYIAEKVFDMLKCSAPT
MLWYCVCFHFSSNSSGPGENTRLCGKLIWVSWKVLIIARRDCAVGAMGLKRKSPQQLEVLREFFANEEYPTNSDMEGLAEVLGLTLGQVRVWFVEKRRRE
KRKIQASTPLQSKKQCLVGEGNQTAIASSAGKVLTQQRALSRDMSKSSSSLSSEVENGISERSLARVQKLLPSEYIPSKIFRKDGPSLGVEFDSVPSGGF
HAVEDSRKSISGSEDDETAEEKRKVLHINPQSGVYQPNVYSTCLRQSYVIYTAGFFVSQHVRDCTLSAMVKKHGMGKGVMTKVLENIRILLRVQDYSVSA
CMEKHGMGKGLMTARQAINPNCGDVSSDIHFSDGRNTSTLEIPTPDSSKLRCQKRKRQSVMAQSKGEETEKQLFREKCELALDGRIAQKSLAEVELLMDD
EEVEMRELHAGPNPLSCSEHCSDNGLHSCPLCKVTMKICSFTLDAFAQAFHDKVEGQELLVNIWKSSLNPLTWTEILRQVLVAAGLGSKQGASRRQALSK
EMRIMLKYGLTPGTLKGKLFRLMFQKGNHGIKVSELAKSTEVVELNLANTTEERELLISSTLSSDITLFEKISLSAYRLRVSSLLKEDGTFQSESEDSGS
IHDDFNDAGMCSSSDSECETESSSQRKLMPLKCNTSKSNMFKIHNEIDESNPGEAWLLGLMDGEYSDLSIEEKLNLLVALVDLVSAGSSIRMEVMLIALG
AFYQDPVRPAFGTVPNLQRYGSGGKIKRSSLHRPSWVHGKQIFDPNITSSLSKSQPVDSSVSICKLNPEDKSSGTGTDAKETEAGACLHHMQSVFLGSDR
RYNRYWLFLGPCDFHDPGHKRVYFESSEDGNWKVVDTAEAFRSLLSVLDNRGRREAHLIESLEKRETFLCHEMSTVLVNDAASCHSSQPILSELSVREDS
SSPISDVDNNLSLTETTNDSLPRCSAIVLDAERNLEEQNPRRSRLQQFDAWIWSHFYCGLNAVKHNKRSYFESLSRCQTCHDLYWRDEKHCRICHSTFEV
DFDLEEKYAVHTATCRLKAENGKLPQYKVLPSVLQTLKAGVHAIESAMPEGALVGAWTKSAHRLWVKRLRRTSSLAELLRVVTDFVAAINEDWLCQYNDA
PGFNPFAEAIVACFSSMPQTSSALALWLVKLDGLILQHLENSQCEENHESAEVIRY

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G12750 Homeodomain-like transcription... Lus10016078 0 1
AT4G12750 Homeodomain-like transcription... Lus10012302 1.0 0.9420
AT3G51620 PAP/OAS1 substrate-binding dom... Lus10006095 1.4 0.9073
AT5G55390 EDM2 ENHANCED DOWNY MILDEW 2 (.1.2) Lus10023353 3.5 0.8931
AT3G54230 SUA suppressor of abi3-5 (.1.2) Lus10031369 4.5 0.8847
AT5G44180 HD Homeodomain-like transcription... Lus10018634 5.0 0.8775
AT5G19330 ARIA ARM repeat protein interacting... Lus10010527 5.2 0.8602
AT5G50970 transducin family protein / WD... Lus10032536 8.1 0.8149
AT4G11110 SPA2 SPA1-related 2 (.1) Lus10032358 9.5 0.8467
AT5G19330 ARIA ARM repeat protein interacting... Lus10034070 14.0 0.8702
AT2G33835 C3HZnF FES1 FRIGIDA-ESSENTIAL 1, Zinc fing... Lus10025447 14.7 0.8534

Lus10016078 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.