Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12770 294 / 8e-86 Chaperone DnaJ-domain superfamily protein (.1.2) AT4G12780 291 / 9e-85 Chaperone DnaJ-domain superfamily protein (.1.2) AT1G21660 219 / 5e-62 Chaperone DnaJ-domain superfamily protein (.1) AT4G36520 212 / 3e-56 Chaperone DnaJ-domain superfamily protein (.1) AT1G75310 191 / 1e-49 AUL1 auxilin-like 1, auxin-like 1 protein (.1) AT1G75100 134 / 2e-32 JAC1 J-domain protein required for chloroplast accumulation response 1 (.1) AT1G30280 95 / 3e-20 Chaperone DnaJ-domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012303 [exp] 701 / 0 AT4G12770 618 / 0.0 Chaperone DnaJ-domain superfamily protein (.1.2) Lus10012302 [exp] 677 / 0 AT4G12750 911 / 0.0 Homeodomain-like transcriptional regulator (.1) Lus10016078 [exp] 417 / 7e-125 AT4G12750 723 / 0.0 Homeodomain-like transcriptional regulator (.1) Lus10018854 [exp] 229 / 1e-64 AT1G21660 402 / 5e-134 Chaperone DnaJ-domain superfamily protein (.1) Lus10028548 [exp] 221 / 8e-62 AT1G21660 402 / 1e-133 Chaperone DnaJ-domain superfamily protein (.1) Lus10041769 [exp] 207 / 1e-54 AT1G75310 328 / 3e-92 auxilin-like 1, auxin-like 1 protein (.1) Lus10024270 [exp] 173 / 7e-44 AT1G75310 290 / 2e-80 auxilin-like 1, auxin-like 1 protein (.1) Lus10007394 [exp] 170 / 7e-43 AT4G36520 284 / 2e-78 Chaperone DnaJ-domain superfamily protein (.1) Lus10033205 [exp] 164 / 6e-41 AT1G75310 259 / 3e-70 auxilin-like 1, auxin-like 1 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G197600 [exp] 374 / 3e-114 AT4G12780 329 / 1e-97 Chaperone DnaJ-domain superfamily protein (.1.2) Potri.002G217200 [exp] 366 / 1e-111 AT4G12780 319 / 2e-94 Chaperone DnaJ-domain superfamily protein (.1.2) Potri.002G079200 [exp] 237 / 2e-68 AT1G21660 351 / 2e-115 Chaperone DnaJ-domain superfamily protein (.1) Potri.005G181700 [exp] 224 / 1e-63 AT1G21660 312 / 3e-100 Chaperone DnaJ-domain superfamily protein (.1) Potri.005G120700 [exp] 220 / 6e-59 AT4G36520 299 / 1e-82 Chaperone DnaJ-domain superfamily protein (.1) Potri.007G022600 [exp] 212 / 3e-56 AT4G36520 306 / 7e-85 Chaperone DnaJ-domain superfamily protein (.1) Potri.005G229300 [exp] 196 / 3e-51 AT4G36520 248 / 1e-66 Chaperone DnaJ-domain superfamily protein (.1) Potri.002G033800 [exp] 186 / 4e-48 AT4G36520 241 / 4e-64 Chaperone DnaJ-domain superfamily protein (.1) Potri.014G042600 [exp] 142 / 1e-34 AT1G75100 261 / 2e-77 J-domain protein required for chloroplast accumulation response 1 (.1) Potri.002G134300 [exp] 137 / 5e-33 AT1G75100 192 / 3e-52 J-domain protein required for chloroplast accumulation response 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Lus10016079 pacid=23154427 polypeptide=Lus10016079 locus=Lus10016079.g ID=Lus10016079.BGIv1.0 annot-version=v1.0 ATGGATGACTTTCCCGGAATCTTAGCGCGGGACTTCGGATTCAAGCCTCAGGGGAAATCCGATCCCATGGCGCCCCCGCGTAACTCCAACACTACCTTCT CCGCGTCATTCGGTAGACCGGAGCCGACGACGAGATCCGCTTCCTCTTTTTCAAACAAATCGTCGCCTGTCTTTGACGATCACGATCGCGGCGGGGATGG TCTCATGTTCAACGACGTATTCGGCGGGCCGCCTAAGTATGGAGAATCACGCGGCGGGAATACCACTTCTTCCTCTGCTTCGTTCGACTACGACTCAATC TTCAAGGACAAGAGTGCCAAGTCCTCGCTCCCGGTTTTTGATAAGCCGGTTTACGATGACGACATTTTCGATGGATTGCCGGGGCTGAGGAGTTCGTCTT CCGCTTCTTCTACTGCTAAGTTCGACGATGTGTTCGCTCCTGTTGGTCATGCTTCTCCCCCCAAGCATAAGTCGATGGACAGCTCGGCATTTGATGATCT GTTGGGAAATTTGGGGAAGAAGGGGGCGGAATCTCGGCGACAGGCTCCAAAGGTGGAGAAAGATTCTCCTGCATTTGATGATTTGCTTCCTGGTTTTGGT CGCAGTAGCTCTCCCAGCGTAATCAGGTCAGCATCTGAGTCCAGTCGGGCCACTAGACCTACTGCAAGTTCGGTCAAGACAGCTCCTACTACAATTGATG ATCCCTTTATGGTGTTAGAGTCAACGTCAGCTCCTGCAACAGCACCATCATCGGAGTCCTTTCCAGATCCATTAGATGAGATTGGTAGATTCAATGGCTC AGGGAGCACAAACGTTGATAGTTCACATGTTCGCAGGCAATCGTTTGATGACTTAGATCCTCTTGACAATCTGTCAAAATCTGTTCCATCAGCTTCAAGC AAGGTTAATGAGAGAGGAAAGGAGAGGAGCCCCTTAAGATCAGGAGATAGCATGGGCGAGACTTTTTCTCCTCCTAGTCTGGATCCGGTTGACAAATATC CGGTGGAGAATTCTAGGAGATACTCACAGCACAATCAGCCCGTTGATGATTTTCAGGAAACTCCTTTTGGCATGGCCCCTGGCCCCAGAGTTGCTAGCAA GCCAGCCCCTGCTCCGCCATTATCTGAAGAGGTCTCAGAATCAGCTGATGAAATATGGCTCACTGTTTCAGAAATTCCTTTGTTTACGAAGCCCACAAGT GCTCCCCCGCCTTCAAGGCCTCCACCTCCAAGACCACCACGTATGAGTGCACAAAAGAGGTTTAATGAACAGTCTTTCTCGAACTCTCGAAGTCCTAGTT CAGCTCAAGCACCAAGAAGCTCAGCATCTCAATTTGATGAACTTGACGATTTTGCGACCGGTTGGACCCAAACTAAAGCAAATGATCATGCTGATAGTTT TGCTGCTGAAGAGGGGGACACAGACTCTTCTGCAGCTGCATCTGCAGCTGCAATGAAGGATGCTATGGATAAGGCAGAAGCTAAAATCAGGCACATGAGG GAGAAAGATTATCTGAAGACTTCTAGAAGTAAAGAGTCCGCTCAGGTGGACCGAGATGTGCTAGAAGCTGAGCAACGAGAACTAAGGGAAAGGCAAGAGA GGTTAGACCGTGAGAGACAACAGAGTCAGAGGGAGGCGGAAGAACAAGAACAGATTAGACTTCGTGAATTAGAGAGGGAGAGGGAAGAAAAAGAGAGAGA ACAGAAGAGACAGGAGAGAGAAAGGGAACGAGTTGAAAGGGAAAGAGCTAGACAAGCAGTTGAAAGGGCCACTAGAGAGGCACGCGAAAGAGCTGCCGCT GATGCTCGGGTACGAGCTGAAAGGGGTGCAGCAGGAAAGGCAAGACTGAAAGGGCTGCAGGCACAAGCCGAAGCTCGTGAAAGGGCAGCAGCAGAAGCTA AGGGAAGAGCAGAAAGAGCAGCAGCAGAAGCACGAGATAGGGCAAATGCTGGGGCAAGGGAGAAGGAAAGGGATGCCCGAGCTAGAGCAGATCGCGCAGC CGTCGAAAGGGCAGCTTCCGAAGCTCGAGAAAGGGCTGCAGCTGCAGCTAGGTCAAACCAGCAAAAATACGAGACACAGCCAAAACATGAAGATGATCTT GAATCATTCTTCAGTTCTCGTCCGAGCAGCGCTCCACGGCCTCGAGCAACCCCTTCCGATCCATTCTTTAATACTGCTAACACTAGAGCCCCTGAAGCAC CTAAGAGTACATCTGTTGGTTCTACATCTAGCTTGAGAAAAGCATCCTCAGCCACAAACATTGTCGATGATCTGTCTTCAATTTTTGGAGCTGCCGGAAC TGGACAATCTGGAGATTTCCAAGACATTGCAGGGGAAACTGAAGAAAGAAGAAGGGCCAGGTTGGAACGCCACCAAAGAACTCAGGAGCGTGCGGCAAAA GCATTGGCTGAGAAGAATCAGCGTGACCTGAATGCTCAGATGGAACAAGAAGAGAGACATAGGATTGCTGAAACTCTGGATTTTGAAATCAAGCGTTGGT CTGCTGGGAAAGAGGGAAATCTACGCGCTCTGCTATCTACACTGCAATATGTATTGTGGCCGGAGTGTGGTTGGCAACCAGTTTCCTTGACCGACCTGAT CACTGCTGCATCCGTTAAAAAAGTTTACAGAAAAGCAACACTGTGCATTCACCCCGATAAAGTGCAGCAGAAAGGTGCCAATCTTCAACAAAAATACATA GCCGAGAAAGTCTTCGACTTGCTGAAGGAAGCATGGAACAAGTTCAATTCGGAGGAGCTATTTTGA
AA sequence Show only first row Show all	>Lus10016079 pacid=23154427 polypeptide=Lus10016079 locus=Lus10016079.g ID=Lus10016079.BGIv1.0 annot-version=v1.0 MDDFPGILARDFGFKPQGKSDPMAPPRNSNTTFSASFGRPEPTTRSASSFSNKSSPVFDDHDRGGDGLMFNDVFGGPPKYGESRGGNTTSSSASFDYDSI FKDKSAKSSLPVFDKPVYDDDIFDGLPGLRSSSSASSTAKFDDVFAPVGHASPPKHKSMDSSAFDDLLGNLGKKGAESRRQAPKVEKDSPAFDDLLPGFG RSSSPSVIRSASESSRATRPTASSVKTAPTTIDDPFMVLESTSAPATAPSSESFPDPLDEIGRFNGSGSTNVDSSHVRRQSFDDLDPLDNLSKSVPSASS KVNERGKERSPLRSGDSMGETFSPPSLDPVDKYPVENSRRYSQHNQPVDDFQETPFGMAPGPRVASKPAPAPPLSEEVSESADEIWLTVSEIPLFTKPTS APPPSRPPPPRPPRMSAQKRFNEQSFSNSRSPSSAQAPRSSASQFDELDDFATGWTQTKANDHADSFAAEEGDTDSSAAASAAAMKDAMDKAEAKIRHMR EKDYLKTSRSKESAQVDRDVLEAEQRELRERQERLDRERQQSQREAEEQEQIRLRELEREREEKEREQKRQERERERVERERARQAVERATREARERAAA DARVRAERGAAGKARLKGLQAQAEARERAAAEAKGRAERAAAEARDRANAGAREKERDARARADRAAVERAASEARERAAAAARSNQQKYETQPKHEDDL ESFFSSRPSSAPRPRATPSDPFFNTANTRAPEAPKSTSVGSTSSLRKASSATNIVDDLSSIFGAAGTGQSGDFQDIAGETEERRRARLERHQRTQERAAK ALAEKNQRDLNAQMEQEERHRIAETLDFEIKRWSAGKEGNLRALLSTLQYVLWPECGWQPVSLTDLITAASVKKVYRKATLCIHPDKVQQKGANLQQKYI AEKVFDLLKEAWNKFNSEELF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12770			Chaperone DnaJ-domain superfam...		Lus10016079 [exp]	0	1
AT4G12770			Chaperone DnaJ-domain superfam...		Lus10012303 [exp]	2.2	0.8681
AT1G54710		ATATG18H	homolog of yeast autophagy 18 ...		Lus10018960 [exp]	3.0	0.8415
AT1G54710		ATATG18H	homolog of yeast autophagy 18 ...		Lus10033817 [exp]	3.7	0.8430
AT1G22730			MA3 domain-containing protein ...		Lus10012204 [exp]	4.5	0.8296
AT1G30000		MNS3	alpha-mannosidase 3 (.1)		Lus10028126 [exp]	5.9	0.8115
AT3G49490			unknown protein		Lus10032925 [exp]	6.5	0.7970
AT5G56240			unknown protein		Lus10008344 [exp]	8.1	0.8021
AT5G07920		ATDGK1, DGK1	DIACYLGLYCEROL KINASE 1, diacy...		Lus10034701 [exp]	8.2	0.7486
AT2G43160			ENTH/VHS family protein (.1.2....		Lus10019571 [exp]	10.4	0.8076
AT2G17790		ZIP3, VPS35A	ZIG suppressor 3, VPS35 homolo...		Lus10041880 [exp]	11.0	0.8036

Compare expression of checked genes

Lus10016079 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.