Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07570 319 / 5e-107 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) AT3G61750 180 / 1e-52 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) AT5G47530 117 / 3e-29 Auxin-responsive family protein (.1) AT5G35735 116 / 5e-29 Auxin-responsive family protein (.1) AT3G25290 110 / 7e-27 Auxin-responsive family protein (.1.2) AT4G17280 110 / 1e-26 Auxin-responsive family protein (.1) AT4G12980 100 / 2e-23 Auxin-responsive family protein (.1) AT3G59070 91 / 7e-20 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) AT2G04850 77 / 2e-15 Auxin-responsive family protein (.1) AT5G54830 76 / 2e-14 DOMON domain-containing protein / dopamine beta-monooxygenase N-terminal domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001180 [exp] 433 / 9e-152 AT3G07570 377 / 5e-130 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) Lus10012305 [exp] 225 / 1e-71 AT3G07570 165 / 8e-49 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) Lus10012625 [exp] 183 / 1e-53 AT3G61750 400 / 7e-138 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) Lus10012304 [exp] 171 / 4e-53 ND 103 / 7e-28 Lus10010120 [exp] 169 / 4e-49 AT3G61750 343 / 5e-117 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) Lus10012350 [exp] 113 / 1e-27 AT5G35735 418 / 3e-145 Auxin-responsive family protein (.1) Lus10002274 [exp] 110 / 9e-27 AT5G47530 432 / 4e-151 Auxin-responsive family protein (.1) Lus10001734 [exp] 109 / 2e-26 AT5G47530 422 / 9e-147 Auxin-responsive family protein (.1) Lus10006398 [exp] 105 / 1e-25 AT5G47530 276 / 2e-91 Auxin-responsive family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G197500 [exp] 354 / 9e-121 AT3G07570 402 / 7e-140 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) Potri.014G098700 [exp] 202 / 8e-61 AT3G61750 402 / 2e-138 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) Potri.014G162000 [exp] 118 / 1e-29 AT5G47530 369 / 2e-126 Auxin-responsive family protein (.1) Potri.006G015000 [exp] 117 / 4e-29 AT5G47530 513 / 0.0 Auxin-responsive family protein (.1) Potri.010G156200 [exp] 115 / 8e-29 AT5G47530 472 / 1e-166 Auxin-responsive family protein (.1) Potri.016G010900 [exp] 113 / 6e-28 AT5G47530 498 / 8e-177 Auxin-responsive family protein (.1) Potri.010G156600 [exp] 113 / 6e-28 AT5G47530 497 / 2e-176 Auxin-responsive family protein (.1) Potri.002G222700 [exp] 113 / 6e-28 AT5G35735 369 / 8e-126 Auxin-responsive family protein (.1) Potri.002G249300 [exp] 101 / 9e-24 AT3G25290 452 / 6e-159 Auxin-responsive family protein (.1.2) Potri.019G095800 [exp] 100 / 4e-23 AT5G47530 310 / 7e-103 Auxin-responsive family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0559 [flax] [poplar] CBD9-like PF03351 [flax] [poplar] DOMON DOMON domain CL0328 [flax] [poplar] 2heme_cytochrom PF03188 [flax] [poplar] Cytochrom_B561 Eukaryotic cytochrome b561
Representative CDS sequence Show only first row Show all	>Lus10016080 pacid=23154375 polypeptide=Lus10016080 locus=Lus10016080.g ID=Lus10016080.BGIv1.0 annot-version=v1.0 ATGGAGCAGCAGCAGCTGGGACGACCTTCCATCTCAACAATAACAATCTTGATCACAATACTACTACTCCTACCACCATCTCTCGTCACCTCACAACCGC AAAACACAGACTCGTGCGCATCAAACGCAGCCCTCGCCTCCCTCTCCGGCTTGCCCTTCGACCCTTCCTCCCTCACCCAGTGCCTCTCACCCTGGATCGC CCACAACTACATACTCCGATACTCGCAAGCGTCGTCGGATGTGTGGAACTTCCTGCTCTCGGCGACGGACGCCAACTCCTACGTGGCGGTGGGGTTCTCG ACGGACGGCCAGATGGTGGGGTCCAGCGCCTTGGTGGGGTGGATGCCGGCGGACGGAAGCGGCGGGCAGGTGAAGCAGTACTATCTAAGCGGGCAGACGC CCGGGCAGGTGGTCCCTGACCAGGGGAACTTGATGATAGGATCGTCGGCGATCGTGTCTCAGCAGTCGAGGCTGTACATGGCTTTCCAGCTAAACACGTC CCAGCCGTCAAATATGTTGCTCTACTCTATGGGGCCGCCGGGGAGGATGCCGGCGCCGCCGGCATACACGTTGACCGAGCACCGGGATAAGGTGTCCACT ACCTTGAATTACGTCACAGGAGAAGTTAAGGAAGAGACAGTAGAACCGTATATGAGCCTGCGAAGGAGCCACGGAATAATGAACATGGTCGGATGGGGAA TCCTTATGTTAATAGGAGCCATGTTGGCTCGTTACTTTAAACACATGGATCCCTTGTGGTTCTACGCCCACGTTTTGGTTCAGTGTTTGGGATTCATCCT TGGTTTGATTGGAGTCATTACTGGCTTGTTGCTGGAAGACGACCTTGATGCTAGCAATGTCTCCACCCACAAAGCTCTCGGCATCTTAGTCCTCGTCTTG GGCTGCCTCCAGGTGATGGCACTGATGCTTCGACCAGAGAAATCATCCAAGTACAGAGTGTACTGGAATTTCTACCATTTCACGGTGGGAAGGATACTAA TGGTGTTTGCAATAGCCAATGTTTTCTACGGAATTCATCTCGGCGGCGAAGGGAGTGGCTGGAACGGTGGTTATGGAGCTGCCCTCGCTGTGCTTTTTGT TACTATCATCGTTCTGGAATTTAGGATGAGATTCAAACAATTCAATTGA
AA sequence Show only first row Show all	>Lus10016080 pacid=23154375 polypeptide=Lus10016080 locus=Lus10016080.g ID=Lus10016080.BGIv1.0 annot-version=v1.0 MEQQQLGRPSISTITILITILLLLPPSLVTSQPQNTDSCASNAALASLSGLPFDPSSLTQCLSPWIAHNYILRYSQASSDVWNFLLSATDANSYVAVGFS TDGQMVGSSALVGWMPADGSGGQVKQYYLSGQTPGQVVPDQGNLMIGSSAIVSQQSRLYMAFQLNTSQPSNMLLYSMGPPGRMPAPPAYTLTEHRDKVST TLNYVTGEVKEETVEPYMSLRRSHGIMNMVGWGILMLIGAMLARYFKHMDPLWFYAHVLVQCLGFILGLIGVITGLLLEDDLDASNVSTHKALGILVLVL GCLQVMALMLRPEKSSKYRVYWNFYHFTVGRILMVFAIANVFYGIHLGGEGSGWNGGYGAALAVLFVTIIVLEFRMRFKQFN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07570			Cytochrome b561/ferric reducta...		Lus10016080 [exp]	0	1
AT2G38300	GARP		myb-like HTH transcriptional r...		Lus10002207 [exp]	1.0	0.9720
AT3G11660		NHL1	NDR1/HIN1-like 1 (.1)		Lus10029406 [exp]	1.4	0.9583
AT1G22340		ATUGT85A7	UDP-glucosyl transferase 85A7 ...		Lus10004670 [exp]	4.6	0.9532
AT5G10830			S-adenosyl-L-methionine-depend...		Lus10024476 [exp]	5.3	0.9477
AT1G27660	bHLH	bHLH110	basic helix-loop-helix (bHLH) ...		Lus10025987 [exp]	5.9	0.9405
AT5G09530		PRP10, PELPK1	proline-rich protein 10, Pro-G...		Lus10033898 [exp]	6.0	0.9277
AT1G64480		CBL8	calcineurin B-like protein 8 (...		Lus10001816 [exp]	6.7	0.9353
AT5G61830			NAD(P)-binding Rossmann-fold s...		Lus10001968 [exp]	8.0	0.9377
AT2G38300	GARP		myb-like HTH transcriptional r...		Lus10012239 [exp]	8.5	0.9411
AT3G29034			unknown protein		Lus10033010 [exp]	8.7	0.9286

Compare expression of checked genes

Lus10016080 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.