Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07560 156 / 1e-45 APM2, PEX13 ABERRANT PEROXISOME MORPHOLOGY 2, peroxin 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012306 [exp] 222 / 2e-71 AT3G07560 154 / 4e-45 ABERRANT PEROXISOME MORPHOLOGY 2, peroxin 13 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G197200 [exp] 157 / 3e-46 AT3G07560 171 / 2e-51 ABERRANT PEROXISOME MORPHOLOGY 2, peroxin 13 (.1) Potri.017G018400 [exp] 140 / 2e-39 AT3G07560 149 / 9e-43 ABERRANT PEROXISOME MORPHOLOGY 2, peroxin 13 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016082 pacid=23154376 polypeptide=Lus10016082 locus=Lus10016082.g ID=Lus10016082.BGIv1.0 annot-version=v1.0 ATGGCCGCCAATTCTCAGCCTACAGGAGGTGGCGCTCCTCCTAAACCTTGGGAACGTGCGGGGGCATCATCTTCCGGCCCAGCACCATTTAAACCTCCGT CAGATGGGAGCACCAGTGCCGTGGTTGAGGCATCTGGAACCGCTCAACCAGGTGAGATCGTTCCGGCAGGTAGTAATAATACGAATATGAACGCTCTCTC AAGGCCTGTACCGAATCGGCCATGGCAGTCACAGACGAATCAGTATGGAGGAGGGTATGGCTCTACTGGCACATACGGATATGGTGGGATGGGTGGTATG GGTGGGATGGGAGGATACAGTAGTGGTTTGTACGGAAACAGCATGTATAGAGGAGGCTATGGTGGAGGTCTATATGGAGGTGGAATGAGCAGCGGTGGTT ATGGTGGTCTTTATGGAGGTGGAATGAATGCTGGTGCGTATGGTGGTTATGGAGGCTATGGTAACTCAATGGGTGGTTACGGAATGGGTGGAATGGGTGG AATGGGTGGTTATGGTCCTCCGAATCCGGATGATGTTCCGACTCCTCCGAGCGTCTGGATCTCTTTCCTCCAAGCGATGGGAGGCATTGTGCAGTTCTTT GGACGGGTAGCAATGCTAATAGACCAGAATACTCAGTCTTTCCACATGTTCATGACTGCCCTTCTTCAGTTTTTCGATCATTCAGGGATGCTATACGGCG AGTTGGCCAGATTTGTTCTGAGAGTTCTGGGAGTCAAAACTAGGCCAAAGAAGTTGCAAGGACAAGCACCTGAAGGACATAATCCATCTCCACACAACCC CCGTGGTTACCAGAACCAAATTCAGGGCCCAAAGGCCGCTGGGGGTCCTGGATGGGACAATGTTTGGGGAGCCGACAGCTAA
AA sequence Show only first row Show all	>Lus10016082 pacid=23154376 polypeptide=Lus10016082 locus=Lus10016082.g ID=Lus10016082.BGIv1.0 annot-version=v1.0 MAANSQPTGGGAPPKPWERAGASSSGPAPFKPPSDGSTSAVVEASGTAQPGEIVPAGSNNTNMNALSRPVPNRPWQSQTNQYGGGYGSTGTYGYGGMGGM GGMGGYSSGLYGNSMYRGGYGGGLYGGGMSSGGYGGLYGGGMNAGAYGGYGGYGNSMGGYGMGGMGGMGGYGPPNPDDVPTPPSVWISFLQAMGGIVQFF GRVAMLIDQNTQSFHMFMTALLQFFDHSGMLYGELARFVLRVLGVKTRPKKLQGQAPEGHNPSPHNPRGYQNQIQGPKAAGGPGWDNVWGADS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07560		APM2, PEX13	ABERRANT PEROXISOME MORPHOLOGY...		Lus10016082 [exp]	0	1
AT2G19830		VPS32, SNF7.2	SNF7 family protein (.1)		Lus10012921 [exp]	2.2	0.8976
AT3G48090		ATEDS1, EDS1	enhanced disease susceptibilit...		Lus10036644 [exp]	3.5	0.8724
AT3G11810			unknown protein		Lus10036797 [exp]	4.5	0.8831
AT2G19830		VPS32, SNF7.2	SNF7 family protein (.1)		Lus10032705 [exp]	6.9	0.8789
AT3G08890			Protein of unknown function, D...		Lus10012232 [exp]	7.7	0.8748
AT1G36980			unknown protein		Lus10037355 [exp]	7.7	0.8763
AT2G27490		ATCOAE	dephospho-CoA kinase family (....		Lus10002109 [exp]	13.2	0.8695
AT4G11660	HSF	AT-HSFB2B, HSFB...	HEAT SHOCK TRANSCRIPTION FACTO...		Lus10038874 [exp]	13.4	0.8305
AT1G21780			BTB/POZ domain-containing prot...		Lus10029677 [exp]	13.8	0.8576
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Lus10011064 [exp]	16.2	0.8669

Compare expression of checked genes

Lus10016082 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.