Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G04350 1025 / 0 LACS8 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2) AT1G77590 899 / 0 LACS9 long chain acyl-CoA synthetase 9 (.1) AT5G27600 346 / 8e-109 LACS7, ATLACS7 long-chain acyl-CoA synthetase 7 (.1) AT3G05970 337 / 3e-105 LACS6, ATLACS6 long-chain acyl-CoA synthetase 6 (.1) AT1G49430 303 / 1e-92 LRD2, LACS2 LATERAL ROOT DEVELOPMENT 2, long-chain acyl-CoA synthetase 2 (.1) AT4G11030 300 / 1e-91 AMP-dependent synthetase and ligase family protein (.1) AT4G23850 299 / 2e-91 LACS4 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) AT2G47240 292 / 1e-88 CER8, LACS1 LONG-CHAIN ACYL-COA SYNTHASE 1, ECERIFERUM 8, AMP-dependent synthetase and ligase family protein (.1.2) AT1G64400 290 / 6e-88 LACS3 long-chain acyl-CoA synthetase 3, AMP-dependent synthetase and ligase family protein (.1) AT3G23790 149 / 2e-37 AAE16 acyl activating enzyme 16, AMP-dependent synthetase and ligase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012307 [exp] 1387 / 0 AT2G04350 1054 / 0.0 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2) Lus10018178 [exp] 889 / 0 AT1G77590 1076 / 0.0 long chain acyl-CoA synthetase 9 (.1) Lus10025657 [exp] 888 / 0 AT1G77590 1067 / 0.0 long chain acyl-CoA synthetase 9 (.1) Lus10029669 [exp] 867 / 0 AT1G77590 1091 / 0.0 long chain acyl-CoA synthetase 9 (.1) Lus10042707 [exp] 862 / 0 AT1G77590 1082 / 0.0 long chain acyl-CoA synthetase 9 (.1) Lus10016085 [exp] 666 / 0 AT2G04350 548 / 0.0 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2) Lus10029918 [exp] 342 / 3e-107 AT5G27600 1122 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Lus10004483 [exp] 338 / 1e-105 AT5G27600 1121 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Lus10010530 [exp] 327 / 1e-101 AT5G27600 1095 / 0.0 long-chain acyl-CoA synthetase 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G169400 [exp] 1120 / 0 AT2G04350 1051 / 0.0 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2) Potri.002G084100 [exp] 903 / 0 AT1G77590 1079 / 0.0 long chain acyl-CoA synthetase 9 (.1) Potri.014G169600 [exp] 891 / 0 AT2G04350 866 / 0.0 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2) Potri.005G177500 [exp] 873 / 0 AT1G77590 1058 / 0.0 long chain acyl-CoA synthetase 9 (.1) Potri.013G021300 [exp] 336 / 5e-105 AT5G27600 1156 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Potri.010G090200 [exp] 331 / 4e-103 AT3G05970 1078 / 0.0 long-chain acyl-CoA synthetase 6 (.1) Potri.001G091900 [exp] 321 / 1e-99 AT4G23850 1101 / 0.0 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) Potri.003G139700 [exp] 317 / 4e-98 AT4G23850 1094 / 0.0 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) Potri.009G109900 [exp] 307 / 2e-94 AT1G49430 951 / 0.0 LATERAL ROOT DEVELOPMENT 2, long-chain acyl-CoA synthetase 2 (.1) Potri.002G192400 [exp] 287 / 7e-87 AT2G47240 950 / 0.0 LONG-CHAIN ACYL-COA SYNTHASE 1, ECERIFERUM 8, AMP-dependent synthetase and ligase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [flax] [poplar] ANL PF00501 [flax] [poplar] AMP-binding AMP-binding enzyme
Representative CDS sequence Show only first row Show all	>Lus10016083 pacid=23154360 polypeptide=Lus10016083 locus=Lus10016083.g ID=Lus10016083.BGIv1.0 annot-version=v1.0 ATGGCAGATCCGGAGGGGATTCTCTTGACCACACCGGTTGTGGATAAACTTAGCTCTACTGATGATAACTTACCAACGGAGAATGCTTCTTATTATGGAA CATATGGCATTGTTGGGGCAGCTTTGCTTGCCATACTCATACCTTTCTTACTGTCTGTTCTTGTCATGGGGAAGAAAAAGCCTAAACAAAGAGGAGTCCC TGTCGAGGTTGGAGGCGAGGCCGGTTATGCAATCCGGAACGCACGAGTGCCGGAGCTGATCGAGTCTCCTTGGGAAGGAGCAACCACTATGGCTGCTCTA TTTGAGCAGTCCTGTAAGAAGTATTCACAGCAGAGGTGCTTTGGGAAGAGGAAGTTGGTTGATAAGGAATTTGTCACAGCTAGTGATGGACGGAAGTTTG AGAAGTTACATTTGGGGGATTATGAGTGGGATACTTATGGACAGGTTTTCGACCGGGCTTCTAACTTCGCCTCTGGACTCGTCGGATTAGGACATGCTCG AGGTTGTCGCGCTGCAATATTCGCTGATACTCGAGCAGAATGGTACATTGCCTTTCAGGGATGCTTTAGGCAAAATATCACTGTAGTGACTATATATGCT TCACTAGGGGAAGATGCCCTAATTCATTCACTCAATGAGACCGAGGTATCGACTGTTATATGCGACCCCAAGCAACTGAAGAAGCTGGCTGCAGTAAGTT CGAGACTGAATACAATTAGGAACGTCATCTACTTTGAAGATGATGGTACTGCTGCAAACACCGGTATCGATGTGGACAACTGGAAAGTTTCCTCCTTTTC GGAAGTCGAGAAACTGGGCAAAGCCAATCCAGTTTCTCCAATCTTGCCTTCTAAAGATACTACTGCTGTTGTCATGTACACAAGCGGCAGCACCGGTCTA CCAAAGGGAGTGATGATCACTCATGGCAATATTGTATCCACCGTGGCAGCAGTTACGACAGTGATCCCGAATCTCGGTAGCAACGATGTCTATCTAGCTT ATTTGCCCCTTGCTCATGTTCTTGAACTGGCAGCTGAGTCTTTAATGGTAGCTTCGGGTATCGGGATCGGATATGGCTCAGCATTGACCTTAACAGACAC ATCAAATAAAATCAAGAAAGGAACTTCAGGGGATGTTACTGCACTGAAGCCAACCCTCATGGTAGCAGTTCCTGCTATATTAGATCGTATCCGAGAAGGG GTACTGAAAAAGGTTGAAGGGAAAGGCGGTTTCGCAAAGAAGCTATTCGACATTGGATATAAGCGACGGCTAGCTGCAATAGAAGGAAGCTGGTTTGGTG CTTGGGGATTGGAGAAGACGTTCTGGGAAGCTGTTGTGTTCAAACCGATACAAGCTTCACTCGGAGGGCGTCTTAGATTCATGTTATGTGGTGGAGCTCC TTTATCTGCAGATTCACAGAGATTCATCAATATATGCATAGGGGCTCCTATAGGTCAAGCATATGGGTTGACCGAAACGTCTGCTGGAGCTGCATTTTCC GAGTGGGATGATACTTCAGTAGGCCGTGTTGGACCGCCTCTTCCTTGTGCCTACATCAAGCTTGTTTCTTGGGGAGAAGGAGGCTATACTATAGAAGACA AGCCGATGCCAAGAGGAGAGATAGTAGTAGGGGGATTAAGTGTAACAGCTGGTTACTTCAACAACAAGGAAAAGACCGATGAGGTGTACAAGACCGACGA AAGAGGCTTTCGCTGGTTTTACACAGGCGACATTGGACAATTCCACCCGGATGGATGCCTTGAGATCATAGATAGGAAGAAGGATATTGTCAAGCTTCAA CATGGAGAATACATCTCCCTTGGAAAGGTTGAAGCAGCTCTACTGACAAGCAACTATGTCGATAGCATCATGATATATGCAGACCCTCTGCAGAGTTATT GTGTCGCTCTTGTTGTTCCGTCGCGACAAGTACTCGAGAAATGGGCGCAAGAAGCCGGAATCGATTATCAGGACTTGAGCGAATTGTGTGACAAAGATGA AGCTGTTAATGAAGTTCAGAAGCAACTTTCCAAGGTGGCGAAAGCTGCGAACTTGGACAAGTTCGAAACTCCGGCGAAGGTCAAGTTGCTTCCTGATCCA TGGACACCCGAGTCTGGCTTAGTGACGGCAGCTCTCAAGATAAAGAGGGAGCAGCTCAAGTCCAAGTTCAAAGATGAACTGCAGAAGCTCTATCATTGA
AA sequence Show only first row Show all	>Lus10016083 pacid=23154360 polypeptide=Lus10016083 locus=Lus10016083.g ID=Lus10016083.BGIv1.0 annot-version=v1.0 MADPEGILLTTPVVDKLSSTDDNLPTENASYYGTYGIVGAALLAILIPFLLSVLVMGKKKPKQRGVPVEVGGEAGYAIRNARVPELIESPWEGATTMAAL FEQSCKKYSQQRCFGKRKLVDKEFVTASDGRKFEKLHLGDYEWDTYGQVFDRASNFASGLVGLGHARGCRAAIFADTRAEWYIAFQGCFRQNITVVTIYA SLGEDALIHSLNETEVSTVICDPKQLKKLAAVSSRLNTIRNVIYFEDDGTAANTGIDVDNWKVSSFSEVEKLGKANPVSPILPSKDTTAVVMYTSGSTGL PKGVMITHGNIVSTVAAVTTVIPNLGSNDVYLAYLPLAHVLELAAESLMVASGIGIGYGSALTLTDTSNKIKKGTSGDVTALKPTLMVAVPAILDRIREG VLKKVEGKGGFAKKLFDIGYKRRLAAIEGSWFGAWGLEKTFWEAVVFKPIQASLGGRLRFMLCGGAPLSADSQRFINICIGAPIGQAYGLTETSAGAAFS EWDDTSVGRVGPPLPCAYIKLVSWGEGGYTIEDKPMPRGEIVVGGLSVTAGYFNNKEKTDEVYKTDERGFRWFYTGDIGQFHPDGCLEIIDRKKDIVKLQ HGEYISLGKVEAALLTSNYVDSIMIYADPLQSYCVALVVPSRQVLEKWAQEAGIDYQDLSELCDKDEAVNEVQKQLSKVAKAANLDKFETPAKVKLLPDP WTPESGLVTAALKIKREQLKSKFKDELQKLYH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G04350		LACS8	long-chain acyl-CoA synthetase...		Lus10016083 [exp]	0	1
AT2G04350		LACS8	long-chain acyl-CoA synthetase...		Lus10016085 [exp]	1.7	0.7791
AT2G42600		ATPPC2	phosphoenolpyruvate carboxylas...		Lus10029837 [exp]	5.9	0.7538
AT3G11640			unknown protein		Lus10021290 [exp]	11.5	0.7476
AT2G25790			Leucine-rich receptor-like pro...		Lus10011609 [exp]	11.8	0.7226
AT1G55090			carbon-nitrogen hydrolase fami...		Lus10017307 [exp]	13.3	0.7713
AT4G20270		BAM3	BARELY ANY MERISTEM 3, Leucine...		Lus10035784 [exp]	17.7	0.7657
AT3G30841			Cofactor-independent phosphogl...		Lus10034089 [exp]	21.7	0.7578
AT5G02920			F-box/RNI-like superfamily pro...		Lus10037289 [exp]	23.4	0.7415
AT2G32700		MUM1, LUH	MUCILAGE-MODIFIED 1, LEUNIG_ho...		Lus10022797 [exp]	28.9	0.7578
AT5G65700		BAM1	BARELY ANY MERISTEM 1, Leucine...		Lus10035783 [exp]	31.4	0.7512

Compare expression of checked genes

Lus10016083 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.