Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G04350 550 / 0 LACS8 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2) AT1G77590 485 / 7e-166 LACS9 long chain acyl-CoA synthetase 9 (.1) AT5G27600 230 / 1e-67 LACS7, ATLACS7 long-chain acyl-CoA synthetase 7 (.1) AT3G05970 216 / 2e-62 LACS6, ATLACS6 long-chain acyl-CoA synthetase 6 (.1) AT1G64400 185 / 2e-51 LACS3 long-chain acyl-CoA synthetase 3, AMP-dependent synthetase and ligase family protein (.1) AT1G49430 185 / 2e-51 LRD2, LACS2 LATERAL ROOT DEVELOPMENT 2, long-chain acyl-CoA synthetase 2 (.1) AT3G07670 178 / 5e-50 Rubisco methyltransferase family protein (.1) AT4G11030 180 / 1e-49 AMP-dependent synthetase and ligase family protein (.1) AT2G47240 179 / 2e-49 CER8, LACS1 LONG-CHAIN ACYL-COA SYNTHASE 1, ECERIFERUM 8, AMP-dependent synthetase and ligase family protein (.1.2) AT4G23850 179 / 4e-49 LACS4 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016083 [exp] 674 / 0 AT2G04350 1057 / 0.0 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2) Lus10012307 [exp] 672 / 0 AT2G04350 1054 / 0.0 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2) Lus10018178 [exp] 491 / 3e-168 AT1G77590 1076 / 0.0 long chain acyl-CoA synthetase 9 (.1) Lus10025657 [exp] 488 / 4e-167 AT1G77590 1067 / 0.0 long chain acyl-CoA synthetase 9 (.1) Lus10029669 [exp] 465 / 4e-158 AT1G77590 1091 / 0.0 long chain acyl-CoA synthetase 9 (.1) Lus10042707 [exp] 463 / 3e-157 AT1G77590 1082 / 0.0 long chain acyl-CoA synthetase 9 (.1) Lus10012309 [exp] 302 / 5e-97 AT3G07670 756 / 0.0 Rubisco methyltransferase family protein (.1) Lus10029918 [exp] 223 / 6e-65 AT5G27600 1122 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Lus10004483 [exp] 219 / 1e-63 AT5G27600 1121 / 0.0 long-chain acyl-CoA synthetase 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G169400 [exp] 562 / 0 AT2G04350 1051 / 0.0 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2) Potri.014G169600 [exp] 547 / 0 AT2G04350 866 / 0.0 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2) Potri.002G084100 [exp] 488 / 7e-167 AT1G77590 1079 / 0.0 long chain acyl-CoA synthetase 9 (.1) Potri.005G177500 [exp] 463 / 3e-157 AT1G77590 1058 / 0.0 long chain acyl-CoA synthetase 9 (.1) Potri.014G169300 [exp] 219 / 1e-65 AT3G07670 754 / 0.0 Rubisco methyltransferase family protein (.1) Potri.013G021300 [exp] 218 / 2e-63 AT5G27600 1156 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Potri.010G090200 [exp] 211 / 1e-60 AT3G05970 1078 / 0.0 long-chain acyl-CoA synthetase 6 (.1) Potri.003G139700 [exp] 200 / 7e-57 AT4G23850 1094 / 0.0 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) Potri.001G091900 [exp] 199 / 1e-56 AT4G23850 1101 / 0.0 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) Potri.009G109900 [exp] 197 / 5e-56 AT1G49430 951 / 0.0 LATERAL ROOT DEVELOPMENT 2, long-chain acyl-CoA synthetase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [flax] [poplar] ANL PF00501 [flax] [poplar] AMP-binding AMP-binding enzyme
Representative CDS sequence Show only first row Show all	>Lus10016085 pacid=23154403 polypeptide=Lus10016085 locus=Lus10016085.g ID=Lus10016085.BGIv1.0 annot-version=v1.0 ATGGCCGAAGCTTCGAGGTTGTTCCAGACGACCTTCCTCCCTTCATTCCATCCATTGCACAGAACCCACAAATTCAACCCTTCCTCTTTCATCACCCCAA CTTCTACTTCCCTCCACCGAAAGTTGAAAAGTTTACACTGCTCCTCGTCGCTGGAAAGCGCGACCAGAGCAACAACAACGGCGACCCAGGAAGTAGTACC GTGGGGATGCGATATCGACTCACCTGAAAACGCCAAAGCCCTGCAGAAGTGGCTGTCGGACAGCGGATTGCCGCCGCAGAAGATGGGGATTGAGAAAGTG GAAGTTGGCGAAAGGGGTTTGGTTGCTCTCAACAACATCAGGAAAGGGGAGAAGTTGCTCTTCGTCCCTCCTTCCCTCTTCATCACCGCCGATTCGGAAT GGAGCTGCCCGGAGGTGGGTGAGGTGTTGAAGAAAAACTCAGTGCCTGACTGGCCGTTGATTGCAACTTACCTGATCAGCGAGGCAAGGAAAGGAGGCTT GGTAAAGAAGCTATTCGACATTGGATATAAGCGACGGCTAGCTGCAATAGAAGGAAGCTGGTTTGGTGCTTGGGGATTGGAGAAGACGTTCTGGGAAGCT AGCGTGTTCAAACCGATACAAGCTTCACTCGGAGGGCGTCTTAGATTCATGTTATGTGGTGGAGCTCCTTTATCTGCAGATTCACAGAGATTCATCAATA TATGCATAGGGGCTCCTATAGGTCAAGCATATGGGTTGACCGAAACGTCTGCTGGAGCTGCATTTTCCGAGTGGGATGATACTTCAGTAGGCCGTGTTGG ACCGCCTCTTCCTTGTGCCTACATCAAGCTTGTTTCTTGGGGAGAAGGAGGCTATACTATAGAAGACAAGCCGATGCCAAGAGGAGAGATAGTAGTAGGG GGATTAAGTGTAACAGCTGGTTACTTCAACAACAAGGAAAAGACCGATGAGGTGTACAAGACCGACGAAAGAGGCTTTCGCTGGTTTTACACAGGCGACA TTGGACAATTCCACCCGGATGGATGCCTTGAGATCATAGATAGGAAGAAGGATATTGTCAAGCTTCAACATGGAGAATACATCTCCCTTGGAAAGGTTGA AGCAGCTCTACTGACAAGCAACTATGTCGATAGCATCATGATATATGCAGACCCTCTGCAGAGTTATTGTGTCGCTCTTGTTGTTCCGTCGCGACAAGTA CTCGAGAAATGGGCGCAAGAAGCCGGAATCGATTATCAGGACTTGAGCGAATTGTGTGACAAAGATGAAGCTGTTAATGAAGTTCAGAAGCAACTTTCCA AGGTGGCGAAAGCTGCGAACTTGGACAAGTTCGAAACTCCGGCGAAGGTCAAGTTGCTTCCTGATCCATGGACACCCGAGTCTGGCTTAGTGACGGCAGC TCTCAAGATAAAGAGGGAGCAGCTCAAGTCCAAGTTCAAAGATGAACTGCAGAAGCTCTATCATTGA
AA sequence Show only first row Show all	>Lus10016085 pacid=23154403 polypeptide=Lus10016085 locus=Lus10016085.g ID=Lus10016085.BGIv1.0 annot-version=v1.0 MAEASRLFQTTFLPSFHPLHRTHKFNPSSFITPTSTSLHRKLKSLHCSSSLESATRATTTATQEVVPWGCDIDSPENAKALQKWLSDSGLPPQKMGIEKV EVGERGLVALNNIRKGEKLLFVPPSLFITADSEWSCPEVGEVLKKNSVPDWPLIATYLISEARKGGLVKKLFDIGYKRRLAAIEGSWFGAWGLEKTFWEA SVFKPIQASLGGRLRFMLCGGAPLSADSQRFINICIGAPIGQAYGLTETSAGAAFSEWDDTSVGRVGPPLPCAYIKLVSWGEGGYTIEDKPMPRGEIVVG GLSVTAGYFNNKEKTDEVYKTDERGFRWFYTGDIGQFHPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALLTSNYVDSIMIYADPLQSYCVALVVPSRQV LEKWAQEAGIDYQDLSELCDKDEAVNEVQKQLSKVAKAANLDKFETPAKVKLLPDPWTPESGLVTAALKIKREQLKSKFKDELQKLYH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G04350		LACS8	long-chain acyl-CoA synthetase...		Lus10016085 [exp]	0	1
AT2G04350		LACS8	long-chain acyl-CoA synthetase...		Lus10016083 [exp]	1.7	0.7791
AT5G35740			Carbohydrate-binding X8 domain...		Lus10039059 [exp]	18.5	0.7802
AT5G19875			unknown protein		Lus10034527 [exp]	29.8	0.7731
AT2G37925		COPT4	copper transporter 4 (.1)		Lus10021108 [exp]	31.3	0.7721
AT5G02140			Pathogenesis-related thaumatin...		Lus10003962 [exp]	33.0	0.7704
AT3G50910			unknown protein		Lus10025996 [exp]	37.8	0.7250
AT4G00550		DGD2	digalactosyl diacylglycerol de...		Lus10009820 [exp]	44.1	0.7351
AT5G01850			Protein kinase superfamily pro...		Lus10025236 [exp]	45.2	0.7458
AT3G50910			unknown protein		Lus10014290 [exp]	50.6	0.7474
AT4G05220			Late embryogenesis abundant (L...		Lus10006755 [exp]	72.1	0.7455

Compare expression of checked genes

Lus10016085 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.