Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07670 640 / 0 Rubisco methyltransferase family protein (.1) AT5G14260 90 / 4e-19 Rubisco methyltransferase family protein (.1.2.3) AT1G14030 84 / 4e-17 Rubisco methyltransferase family protein (.1) AT3G55080 77 / 5e-15 SET domain-containing protein (.1.2) AT2G18850 75 / 3e-14 SET domain-containing protein (.1.2) AT5G17240 52 / 5e-07 SDG40 SET domain group 40 (.1) AT4G20130 42 / 0.0007 PTAC14 plastid transcriptionally active 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012309 [exp] 795 / 0 AT3G07670 756 / 0.0 Rubisco methyltransferase family protein (.1) Lus10016085 [exp] 138 / 7e-36 AT2G04350 548 / 0.0 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2) Lus10036780 [exp] 97 / 1e-21 AT1G14030 643 / 0.0 Rubisco methyltransferase family protein (.1) Lus10022333 [exp] 79 / 2e-15 AT5G14260 753 / 0.0 Rubisco methyltransferase family protein (.1.2.3) Lus10040345 [exp] 75 / 4e-14 AT3G55080 456 / 9e-158 SET domain-containing protein (.1.2) Lus10006953 [exp] 66 / 2e-11 AT2G18850 548 / 0.0 SET domain-containing protein (.1.2) Lus10025463 [exp] 65 / 6e-11 AT2G18850 525 / 0.0 SET domain-containing protein (.1.2) Lus10026538 [exp] 53 / 3e-07 AT3G56570 505 / 2e-175 SET domain-containing protein (.1) Lus10013825 [exp] 49 / 4e-06 AT3G56570 439 / 9e-152 SET domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G169300 [exp] 704 / 0 AT3G07670 754 / 0.0 Rubisco methyltransferase family protein (.1) Potri.008G090500 [exp] 94 / 2e-20 AT1G14030 630 / 0.0 Rubisco methyltransferase family protein (.1) Potri.008G047400 [exp] 81 / 3e-16 AT3G55080 511 / 1e-179 SET domain-containing protein (.1.2) Potri.017G066500 [exp] 80 / 7e-16 AT5G14260 783 / 0.0 Rubisco methyltransferase family protein (.1.2.3) Potri.006G168900 [exp] 74 / 4e-14 AT2G18850 628 / 0.0 SET domain-containing protein (.1.2) Potri.008G134200 [exp] 53 / 2e-07 AT1G24610 639 / 0.0 Rubisco methyltransferase family protein (.1) Potri.004G081400 [exp] 51 / 9e-07 AT5G17240 543 / 0.0 SET domain group 40 (.1) Potri.014G077700 [exp] 43 / 0.0003 AT1G01920 729 / 0.0 SET domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09273 [flax] [poplar] Rubis-subs-bind Rubisco LSMT substrate-binding PF00856 [flax] [poplar] SET SET domain
Representative CDS sequence Show only first row Show all	>Lus10016087 pacid=23154434 polypeptide=Lus10016087 locus=Lus10016087.g ID=Lus10016087.BGIv1.0 annot-version=v1.0 ATGGGGATTGAGAAAGTGGAAGGTGGCGAAAGGGGTTTGGTTGCTCTCAACAACATCAGGAAAGGGGAGAAGTTGCTCTTCGTCCCTCCTTCCCTCTTCA TCACCGCCGATTCGGAATGGAGCTGCCCGGAGGTGGGTGAGGTGTTGAAGAAAAACTCAGTGCCTGACTGGCCGTTGATTGCAACTTACCTGATCAGCGA GGCAAGTCTGGAGAAATCATCCAGATGGAGCAACTACATCTCTGCTTTACCCCGCCAACCTTATTCACTGTTGTACTGGACACGTGCTGAACTAGATAGG TATCTTGAAGCTTCACAGATCAGTGACCGGGCTATTGAAAGGATTAACAACGTCGTTGGAACGTATGCTCTTGCTCACTTGCATCATTCTGCAGGTTGTG TGTTCAGTTATACCATGTTATGCTTACTTGCAATTGTGTTATCGCCTCCTTTTGCTAGGTATAATGATTTGAAGCAGAGAATATTCTCCAAGCATCCTCA ACTCTTTCCAGAAGAGGTATTCAACATCGAGTCTTTCAGATGGTCATTTGGCATTCTCTTCTCTCGCTTGGTTCGTTTGCCCTCAATGGATGGAAAAGTA GCCCTGGTTCCCTGGGCAGATATGTTGAATCATAGTTGTGAGGTAGAGACATTTCTGGATTATGATAAATCCTCGAAAGGAGTAGTCTTCACGACTGATA GACCGTACCAGCTAGCTGAGCAGGTCTTCATATCTTACGGGAAGAAATCTAATGGAGAGCTGTTGCTATCTTACGGGTTTGTTCCAAGAGAGGGTACGAA TCCCAGCGACTCGGTAGAGTTGTCATTTTCTCTTAAAAAGTCTGACAAATGCTACAAGGAGAAGCTTGAAGCTTTGAGGAAGTATGGTTTGTCAGGGTCA GAGTGCTTCCCAATTCGCGTCACCGGTTGGCCATTGGAGTTGCTTGCATATGCCTACTTAGCCGTTAGTCCTCCTAGCATGAGCAGACAGTTTGAAGAGA TGGCAGCTGCGGCATCAAATAAGAAATCAATCAAGAAAGACAGACCGTATCCTGAAATTGAGGAAGAGGCATTCCAGTTCATATTGGATAGCTGTGAGTC CAGCATATCAAAGTACACCAAGTTCTTGCAGGCAAGTGGATCAATGGATTTGGATGTGACATCTCCAAAGCAACTGAACAGAAGGTTGTTCCTGAAGCAG CTTGCAGTGGATTTGTGCAATAGCGAGCGAAGGATACTGTATCGTGCTCAAACGGTGCTGAGAAGAAGACTAAGAGACATGCGTAGTGGGGAATTGAAAG CTTTGAATCTCTTCGATGGCCTCAGAAACCTTTTCAGATGA
AA sequence Show only first row Show all	>Lus10016087 pacid=23154434 polypeptide=Lus10016087 locus=Lus10016087.g ID=Lus10016087.BGIv1.0 annot-version=v1.0 MGIEKVEGGERGLVALNNIRKGEKLLFVPPSLFITADSEWSCPEVGEVLKKNSVPDWPLIATYLISEASLEKSSRWSNYISALPRQPYSLLYWTRAELDR YLEASQISDRAIERINNVVGTYALAHLHHSAGCVFSYTMLCLLAIVLSPPFARYNDLKQRIFSKHPQLFPEEVFNIESFRWSFGILFSRLVRLPSMDGKV ALVPWADMLNHSCEVETFLDYDKSSKGVVFTTDRPYQLAEQVFISYGKKSNGELLLSYGFVPREGTNPSDSVELSFSLKKSDKCYKEKLEALRKYGLSGS ECFPIRVTGWPLELLAYAYLAVSPPSMSRQFEEMAAAASNKKSIKKDRPYPEIEEEAFQFILDSCESSISKYTKFLQASGSMDLDVTSPKQLNRRLFLKQ LAVDLCNSERRILYRAQTVLRRRLRDMRSGELKALNLFDGLRNLFR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07670			Rubisco methyltransferase fami...		Lus10016087 [exp]	0	1
AT2G23390			unknown protein		Lus10010689 [exp]	1.0	0.9139
AT4G01690		PPOX, HEMG1, PP...	Flavin containing amine oxidor...		Lus10007194 [exp]	8.9	0.8618
AT1G13270		MAP1B, MAP1C	methionine aminopeptidase 1B (...		Lus10035045 [exp]	10.2	0.8812
AT3G56160			Sodium Bile acid symporter fam...		Lus10019540 [exp]	11.0	0.8538
AT4G14210		PDE226, PDS3	PIGMENT DEFECTIVE 226, phytoen...		Lus10025080 [exp]	11.8	0.8549
AT4G20030			RNA-binding (RRM/RBD/RNP motif...		Lus10006936 [exp]	14.7	0.8579
AT2G45770		FRD4, CPFTSY	FERRIC CHELATE REDUCTASE DEFEC...		Lus10036570 [exp]	15.3	0.8591
AT1G14270			CAAX amino terminal protease f...		Lus10037179 [exp]	17.0	0.8664
AT1G35340			ATP-dependent protease La (LON...		Lus10008251 [exp]	17.3	0.8408
AT1G53250			unknown protein		Lus10042840 [exp]	18.7	0.8527

Compare expression of checked genes

Lus10016087 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.