Plant FIBer expression Database

Lus10016088 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G07990 748 / 0 SIT4 phosphatase-associated family protein (.1)
AT3G45190 719 / 0 SIT4 phosphatase-associated family protein (.1)
AT2G28360 714 / 0 SIT4 phosphatase-associated family protein (.1)
AT1G30470 619 / 0 SIT4 phosphatase-associated family protein (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037400
[exp]
804 / 0 AT1G07990 976 / 0.0 SIT4 phosphatase-associated family protein (.1)
Lus10021468
[exp]
764 / 0 AT3G45190 851 / 0.0 SIT4 phosphatase-associated family protein (.1)
Lus10023354
[exp]
605 / 0 AT1G30470 918 / 0.0 SIT4 phosphatase-associated family protein (.1.2.3)
Lus10038452
[exp]
556 / 0 AT1G30470 842 / 0.0 SIT4 phosphatase-associated family protein (.1.2.3)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G014700
[exp]
843 / 0 AT1G07990 1019 / 0.0 SIT4 phosphatase-associated family protein (.1)
Potri.004G211500
[exp]
822 / 0 AT1G07990 991 / 0.0 SIT4 phosphatase-associated family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF04499 SAPS SIT4 phosphatase-associated protein
Representative CDS sequence
>Lus10016088 pacid=23171820 polypeptide=Lus10016088 locus=Lus10016088.g ID=Lus10016088.BGIv1.0 annot-version=v1.0
ATGTTCTGGAAGCTGCCTATTCTCTCCGCTTCCTCTCCCGTGGAGGCAGTACTTGACAAGGAGAACTTCACATTGGAGGAGCTTCTCGATGAGGAAGAGA
TAATCCAAGAATGCAAGGCTCTGAACAGCCGTCTGATTAACTTTTTGCGTGACCGAGCTCAAGTGGAGCAGCTACTTCATTACATAATTGATGATCCTCC
GGAGGATGCTGAAAGCAAAAGAGCCTTCAAGTTTCCATTCATCGCCTGTGAGATATTCATATGTGAAATTGATGTTATTCTAAAGACTTTGGTGGAGGAA
GAGGAGGTTGTTGTCTGCTTGATGTTGCGCAAGACTGTTCCCCTCATGAACTATGTTCAGGCTCATCAGGATGTTTTCCGAAAGTTGGTTGACTTAATTG
GCATCACCTCAATCATGGAGGTTTTGGTTCGGCTAGTTGGTGCCGATGATCATGTGTATCCCAATTTTACCGATGTGATGCAATGGCTGGCAGACAGTAA
TTTGCTAGAAATGGTTGTGGACAAATTGAGCCCTTCCTGCCCTCCAGAAGTCCATGCTAATGCGGCAGAAACTCTTAGTTCAATTACTAGGAACTCTGGA
TCAGCTTTAGCAACCAAACTCTCCAGTCCAAGTTTTGTTGCAAGGATATTTGGTCATGCATTGGAAGATTCAAATTCCAAATCTGGTCTTATTCATTCAC
TATCAGTGTGCATCTCTTTACTGGATCCGAAAAAATTAACGAATTCATCACTGTTGATGCATTCTTTCCGAAGTCAGCATATGTATGAGGCACCAATTCC
TATAAATCCAGAGACCATAGATGCAATGCTGCCTCAACTAGGTGACTTGCTCAAGTTACTGGATGTGTCATCTGATGAGAAGATTTTGCCAACAACGTAT
GGTCAGCTGAAGCCTCCATTGGGGAAGCATCGTCTTAAGATTGTAGAGTTTATTGCAATTTTGCTGAAAACTAGCAATGAAGCTGCGGAGAAGGAGTTGG
TCAGTTCAGGAACCATCGGGAGAGTCCTTGATCTGTTCTTTGAGTACCCATACAATAATGCCTTGCACCACCATGTGGAAAGCATTATATATTCATGTCT
GGAGACCAAGAGCGAATCTGTGATTGATCATCTGCTTCGTGAGTGTGATTTGATAGGGAAGCTTCTTCAGACAGACAAGAAACCCATAATCTCTGATGAA
CAGGATCAGCCAACTTTACCTGCTGCTGGGAAACGGGCTCCAAGGTTAGGAAATCTGGGGCATATTACTAGAATTTCCAATAAGCTTGTTCAGCTGGGAA
ATAGCAACAGCTATATTCACACATATTTACAGGAAAACAGTGAATGGAATGATTGGCAAACCAGTGTTCTGCAAGAGCGTAACATTACTGAGAATGTTTA
CCGTTGGGCTTGTGGCCGTCCAACTGCATTGCACGATAGAACAAGGGACAGTGATGATGAAGACCTTCATGACAGAGATTATGATGTAGCGGCTCTGGCA
ACTAATTTAAATCAGGCATTTAGGTATAAGATTTATGGGAATGAGGATGCTGACGAGGAAAATGGTGGCCTTGATAGAGATGACGAGGATGTTTACTTTG
ATGATGAATCTGCTGAAGTAGTTATATCATCGCTCCGGCTTGGTGATGACCAGGGAAGGTGA
AA sequence
>Lus10016088 pacid=23171820 polypeptide=Lus10016088 locus=Lus10016088.g ID=Lus10016088.BGIv1.0 annot-version=v1.0
MFWKLPILSASSPVEAVLDKENFTLEELLDEEEIIQECKALNSRLINFLRDRAQVEQLLHYIIDDPPEDAESKRAFKFPFIACEIFICEIDVILKTLVEE
EEVVVCLMLRKTVPLMNYVQAHQDVFRKLVDLIGITSIMEVLVRLVGADDHVYPNFTDVMQWLADSNLLEMVVDKLSPSCPPEVHANAAETLSSITRNSG
SALATKLSSPSFVARIFGHALEDSNSKSGLIHSLSVCISLLDPKKLTNSSLLMHSFRSQHMYEAPIPINPETIDAMLPQLGDLLKLLDVSSDEKILPTTY
GQLKPPLGKHRLKIVEFIAILLKTSNEAAEKELVSSGTIGRVLDLFFEYPYNNALHHHVESIIYSCLETKSESVIDHLLRECDLIGKLLQTDKKPIISDE
QDQPTLPAAGKRAPRLGNLGHITRISNKLVQLGNSNSYIHTYLQENSEWNDWQTSVLQERNITENVYRWACGRPTALHDRTRDSDDEDLHDRDYDVAALA
TNLNQAFRYKIYGNEDADEENGGLDRDDEDVYFDDESAEVVISSLRLGDDQGR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G45190 SIT4 phosphatase-associated fa... Lus10016088
[exp]
0 1
AT5G22780 Adaptor protein complex AP-2, ... Lus10005371
[exp]
1.4 0.9518
AT5G22780 Adaptor protein complex AP-2, ... Lus10020522
[exp]
2.0 0.9452
AT1G48490 Protein kinase superfamily pro... Lus10031906
[exp]
2.4 0.9388
AT3G17850 Protein kinase superfamily pro... Lus10031332
[exp]
2.8 0.9374
AT3G15880 WSIP2, TPR4 TOPLESS-RELATED 4, WUS-interac... Lus10043258
[exp]
3.6 0.9156
AT5G18230 transcription regulator NOT2/N... Lus10002632
[exp]
4.9 0.9218
AT3G60240 CUM2, EIF4G CUCUMOVIRUS MULTIPLICATION 2, ... Lus10028156
[exp]
5.0 0.9263
AT1G79280 AtTPR, NUA TRANSLOCATED PROMOTER REGION, ... Lus10030142
[exp]
5.5 0.9170
AT2G47330 P-loop containing nucleoside t... Lus10011466
[exp]
6.9 0.9160
AT3G60240 CUM2, EIF4G CUCUMOVIRUS MULTIPLICATION 2, ... Lus10042856
[exp]
7.9 0.9178

Lus10016088 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.