Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28350 246 / 1e-75 ARF ARF10 auxin response factor 10 (.1) AT4G30080 225 / 7e-68 ARF ARF16 auxin response factor 16 (.1) AT1G77850 92 / 2e-20 ARF ARF17 auxin response factor 17 (.1) AT1G19850 72 / 1e-13 ARF IAA24, ARF5, MP MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) AT5G62000 67 / 9e-12 ARF ORE14, HSS, ARF1-BP, ARF2 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) AT4G23980 62 / 3e-10 ARF ARF9 auxin response factor 9 (.1.2) AT5G37020 61 / 8e-10 ARF ARF8, ATARF8 auxin response factor 8 (.1.2) AT2G46530 58 / 5e-09 ARF ARF11 auxin response factor 11 (.1.2.3) AT2G33860 58 / 6e-09 ARF ARF3, ETT ETTIN, AUXIN RESPONSE TRANSCRIPTION FACTOR 3, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) AT1G19220 58 / 6e-09 ARF IAA22, ARF11, ARF19 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021467 [exp] 551 / 0 AT4G30080 588 / 0.0 auxin response factor 16 (.1) Lus10026510 [exp] 242 / 4e-74 AT4G30080 694 / 0.0 auxin response factor 16 (.1) Lus10019940 [exp] 233 / 7e-71 AT4G30080 660 / 0.0 auxin response factor 16 (.1) Lus10040403 [exp] 177 / 2e-50 AT4G30080 625 / 0.0 auxin response factor 16 (.1) Lus10023519 [exp] 176 / 4e-50 AT4G30080 622 / 0.0 auxin response factor 16 (.1) Lus10024753 [exp] 107 / 3e-25 AT1G77850 494 / 2e-169 auxin response factor 17 (.1) Lus10009770 [exp] 107 / 3e-25 AT1G77850 496 / 4e-170 auxin response factor 17 (.1) Lus10024754 [exp] 106 / 6e-25 AT1G77850 505 / 1e-173 auxin response factor 17 (.1) Lus10012421 [exp] 66 / 1e-11 AT1G19850 1026 / 0.0 MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G211700 [exp] 290 / 2e-92 AT2G28350 777 / 0.0 auxin response factor 10 (.1) Potri.010G223200 [exp] 253 / 3e-78 AT4G30080 777 / 0.0 auxin response factor 16 (.1) Potri.008G039000 [exp] 241 / 1e-73 AT4G30080 749 / 0.0 auxin response factor 16 (.1) Potri.009G014800 [exp] 236 / 5e-72 AT2G28350 706 / 0.0 auxin response factor 10 (.1) Potri.006G127500 [exp] 221 / 3e-66 AT4G30080 677 / 0.0 auxin response factor 16 (.1) Potri.016G090300 [exp] 216 / 2e-64 AT4G30080 687 / 0.0 auxin response factor 16 (.1) Potri.005G171300 [exp] 112 / 3e-27 AT1G77850 534 / 0.0 auxin response factor 17 (.1) Potri.002G089900 [exp] 104 / 2e-24 AT1G77850 520 / 2e-179 auxin response factor 17 (.1) Potri.014G135300 [exp] 69 / 1e-12 AT5G62000 466 / 6e-153 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Potri.001G066200 [exp] 69 / 1e-12 AT5G62000 765 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF02309 [flax] [poplar] AUX_IAA AUX/IAA family CL0072 [flax] [poplar] PF06507 [flax] [poplar] Auxin_resp Auxin response factor
Representative CDS sequence Show only first row Show all	>Lus10016090 pacid=23171860 polypeptide=Lus10016090 locus=Lus10016090.g ID=Lus10016090.BGIv1.0 annot-version=v1.0 ATGAGGATTCATTGGAGCTGTGGAATGAGATTCAAGATTCCATTTGAGACTGAAGATTCCTCCAGGATCAGCTGGTTCAATGGCACTGTAGCTTCCGCTC AGGTCTGCGATCCCATTCGCTGGCCGAATTCGCCATGGCGCCTTCTTCAGGTAACATGGGACGAGCCGGACTTGCTGCAGAACGTTCTACGAGTGAGCCC GTGGCTCGTCGAGTTAGTTTCGAGCATACCGATGATCCAACCACCACCACCGTTACCATTCTCTCCACCGAGGAAGAAGTCAAGGTTTGACTTCGCCCTC GAGGAAGGGAGATTTCAGTTGCCTTGTTATACAAGCAACAACAGCACCCTAGCGTACTCCAGCGGCAGTTGTTATTATAACACTGCTGCAGGCATACAGG GAGCCAGGCATTTTTCACAAATCGGAGCATCTTTATCAGATCACCTCCGGTTTAACCAGTATCCGAATTTCGAGCAGTTTGTCGTGAATCCGCAGTGTAG CAGCAACGAGAGCGTCTCTTGCTTGCTTACTATCGGTGGCAGCTCGAGTTCCACCTCGGAGAAGAAGAAGAAGAAGAAGAAAGAGTTCTTACTCTTTGGT CAGGTGATACTCACCGAGCAGCAAGTGGAGGCGAACCTTTCGAGTGAATCGGTCTCGCAGGGCTCCTCGAGTGAGAGTGACGATGAATCGAATCGGACAG CTGGATACTGTTGCAAAGTTTTCATCGAATCGGAAGATGCAGGACGGACCATCGACCTCACCGCATTCGCCTCGTACGAGGATTTGTACACTAGGCTTGT GGACATGTTTGGAATAGACCGAGCTGTGATGTTGAACCGTGTTCTGTACCGCAATGCAGCTGGTGCGGTCAAACTAATCGGAGAGGAACCCTTCAGTGTG TTCTCAAGGACTGCAAGTAGACTGACCATACTGATCAATCCTGACCACAATGTCGGAAGGACATGGATGGCTGCGGTGGGTCGTAACGTTGAAATCGGGC TAGAAGGTTCAAACAAGAGAGGCGCTTTGAGCATATTTGTTTAG
AA sequence Show only first row Show all	>Lus10016090 pacid=23171860 polypeptide=Lus10016090 locus=Lus10016090.g ID=Lus10016090.BGIv1.0 annot-version=v1.0 MRIHWSCGMRFKIPFETEDSSRISWFNGTVASAQVCDPIRWPNSPWRLLQVTWDEPDLLQNVLRVSPWLVELVSSIPMIQPPPPLPFSPPRKKSRFDFAL EEGRFQLPCYTSNNSTLAYSSGSCYYNTAAGIQGARHFSQIGASLSDHLRFNQYPNFEQFVVNPQCSSNESVSCLLTIGGSSSSTSEKKKKKKKEFLLFG QVILTEQQVEANLSSESVSQGSSSESDDESNRTAGYCCKVFIESEDAGRTIDLTAFASYEDLYTRLVDMFGIDRAVMLNRVLYRNAAGAVKLIGEEPFSV FSRTASRLTILINPDHNVGRTWMAAVGRNVEIGLEGSNKRGALSIFV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28350	ARF	ARF10	auxin response factor 10 (.1)		Lus10016090 [exp]	0	1
AT1G04880	ARID		HMG (high mobility group) box ...		Lus10007127 [exp]	5.2	0.7880
AT2G41200			unknown protein		Lus10008568 [exp]	6.2	0.8354
AT5G50400		ATPAP27, PAP27	ARABIDOPSIS THALIANA PURPLE AC...		Lus10037080 [exp]	7.1	0.7960
AT4G02590	bHLH	bHLH059, UNE12	unfertilized embryo sac 12, ba...		Lus10002720 [exp]	7.9	0.7694
AT5G17230		PSY	PHYTOENE SYNTHASE (.1.2.3)		Lus10001416 [exp]	11.4	0.8051
AT2G20100	bHLH		basic helix-loop-helix (bHLH) ...		Lus10023669 [exp]	17.8	0.8043
AT2G45080		CYCP3;1	cyclin p3;1 (.1)		Lus10028174 [exp]	18.0	0.8017
AT5G41620			unknown protein		Lus10028746 [exp]	19.4	0.7472
AT3G02300			Regulator of chromosome conden...		Lus10030712 [exp]	21.8	0.7753
AT3G25280			Major facilitator superfamily ...		Lus10038222 [exp]	23.3	0.7299

Compare expression of checked genes

Lus10016090 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.