Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28350 288 / 2e-92 ARF ARF10 auxin response factor 10 (.1) AT4G30080 286 / 5e-92 ARF ARF16 auxin response factor 16 (.1) AT1G77850 223 / 1e-68 ARF ARF17 auxin response factor 17 (.1) AT1G19220 206 / 5e-60 ARF IAA22, ARF11, ARF19 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) AT2G33860 198 / 8e-59 ARF ARF3, ETT ETTIN, AUXIN RESPONSE TRANSCRIPTION FACTOR 3, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) AT5G20730 197 / 8e-57 ARF MSG1, IAA21, BIP, ARF7, IAA25, IAA23, TIR5, NPH4 MASSUGU 1, indole-3-acetic acid inducible 25, indole-3-acetic acid inducible 23, indole-3-acetic acid inducible 21, BIPOSTO, AUXIN RESPONSE FACTOR 7, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1.2.3) AT5G37020 192 / 1e-55 ARF ARF8, ATARF8 auxin response factor 8 (.1.2) AT1G19850 192 / 3e-55 ARF IAA24, ARF5, MP MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) AT1G30330 191 / 1e-54 ARF ARF6 auxin response factor 6 (.1.2) AT2G46530 182 / 8e-53 ARF ARF11 auxin response factor 11 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021467 [exp] 499 / 7e-175 AT4G30080 588 / 0.0 auxin response factor 16 (.1) Lus10023519 [exp] 286 / 2e-92 AT4G30080 622 / 0.0 auxin response factor 16 (.1) Lus10040403 [exp] 282 / 8e-91 AT4G30080 625 / 0.0 auxin response factor 16 (.1) Lus10026510 [exp] 280 / 2e-89 AT4G30080 694 / 0.0 auxin response factor 16 (.1) Lus10019940 [exp] 259 / 9e-82 AT4G30080 660 / 0.0 auxin response factor 16 (.1) Lus10024753 [exp] 218 / 2e-66 AT1G77850 494 / 2e-169 auxin response factor 17 (.1) Lus10024754 [exp] 217 / 5e-66 AT1G77850 505 / 1e-173 auxin response factor 17 (.1) Lus10009770 [exp] 209 / 3e-63 AT1G77850 496 / 4e-170 auxin response factor 17 (.1) Lus10027600 [exp] 203 / 6e-59 AT1G19220 670 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G211700 [exp] 319 / 3e-104 AT2G28350 777 / 0.0 auxin response factor 10 (.1) Potri.009G014800 [exp] 316 / 3e-103 AT2G28350 706 / 0.0 auxin response factor 10 (.1) Potri.010G223200 [exp] 294 / 2e-94 AT4G30080 777 / 0.0 auxin response factor 16 (.1) Potri.016G090300 [exp] 289 / 7e-93 AT4G30080 687 / 0.0 auxin response factor 16 (.1) Potri.006G127500 [exp] 288 / 3e-92 AT4G30080 677 / 0.0 auxin response factor 16 (.1) Potri.008G039000 [exp] 285 / 3e-91 AT4G30080 749 / 0.0 auxin response factor 16 (.1) Potri.005G171300 [exp] 238 / 5e-74 AT1G77850 534 / 0.0 auxin response factor 17 (.1) Potri.002G089900 [exp] 228 / 3e-70 AT1G77850 520 / 2e-179 auxin response factor 17 (.1) Potri.018G145800 [exp] 204 / 2e-59 AT1G19220 665 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Potri.006G138500 [exp] 204 / 2e-59 AT1G19220 734 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10016091 pacid=23171845 polypeptide=Lus10016091 locus=Lus10016091.g ID=Lus10016091.BGIv1.0 annot-version=v1.0 ATGAAGGAGAAGAGCTTTGTAGATCCACAGCTATGGCAAGCATGTGCAGGAAGCTTAGTCCAAATACCACCTCTGAACTCTCACGTCTTCTATTTCCCAC AAGGTCACGCCGAGCACTCTCAATCGCCGGTGAGCTTTCCTCCTGATTGTTCCAAGCTCCCTGCCGCCGTCCTCTGCCGCATCGCCGCCGTGGATTTCCT AGCTGACCAGGAATCCGACGAGGTCTTCTCCAAGCTGACCTTCGTCCCTATCTCGTCGGAATCCGAGGAGAAGGTTTTTGATGGGGGGAGTTTGATGGAG AAGAATAATAAGCCGGCTTCGTTCGCCAAGACGCTGACGCAGTCCGGCGCGAACAACGGCGGAGGATTCTCCGTCCCTCGGTACTGCGCCGAGACGATTT TCCCTCGGCTGGATTACTCCGCTGATCCTCCGGTTCAGACGGTGGTGGCTAAGGACGTCCACGGCGAGGTTTGGAAGTTTCGTCATATTTACCGCGGGAC TCCAAGGAGGCATCTTTTGACTACTGGGTGGAGCTCGTTCGTCAACCGGAAGAAGCTAGTCGCCGGGGACTCGATCGTCTTCCTCCGCAGCGAGTTCGGC GAGCTGTGCGTCGGAATCCGCCGCGCCAAACGCGGAGTCGCCGGTGGAGTCGGAGCTGAAAAGCTCTGCCAGTCTGGTTGGGGAATCAACGCAAACAGTT GGTCTGCAGGTGGGATCTTCAGCCCTTACGGTGGAGTTTCCATCAAACGAAACGGCAGCGGCGATAGCGGCGCCGGAGGAAGAAGAGAAGGACCTGCTGC GCCGGTGAAGGTGACGGCGGAGGAGGTTCTGGAGGCAGCGACATCGGCAGCTGAAGGGAGACCAGGAGGTTCTGGAGGCAGCGACATCGGCAGCTGA
AA sequence Show only first row Show all	>Lus10016091 pacid=23171845 polypeptide=Lus10016091 locus=Lus10016091.g ID=Lus10016091.BGIv1.0 annot-version=v1.0 MKEKSFVDPQLWQACAGSLVQIPPLNSHVFYFPQGHAEHSQSPVSFPPDCSKLPAAVLCRIAAVDFLADQESDEVFSKLTFVPISSESEEKVFDGGSLME KNNKPASFAKTLTQSGANNGGGFSVPRYCAETIFPRLDYSADPPVQTVVAKDVHGEVWKFRHIYRGTPRRHLLTTGWSSFVNRKKLVAGDSIVFLRSEFG ELCVGIRRAKRGVAGGVGAEKLCQSGWGINANSWSAGGIFSPYGGVSIKRNGSGDSGAGGRREGPAAPVKVTAEEVLEAATSAAEGRPGGSGGSDIGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30080	ARF	ARF16	auxin response factor 16 (.1)		Lus10016091 [exp]	0	1
AT5G54670		KATC, ATK3	KINESIN-LIKE PROTEIN IN ARABID...		Lus10036621 [exp]	1.4	0.9639
AT3G01810			unknown protein		Lus10015805 [exp]	2.8	0.9528
AT5G54670		KATC, ATK3	KINESIN-LIKE PROTEIN IN ARABID...		Lus10035838 [exp]	3.9	0.9318
AT5G45290			RING/U-box superfamily protein...		Lus10037267 [exp]	5.3	0.9251
AT1G49890		QWRF2	QWRF domain containing 2, Fami...		Lus10033792 [exp]	6.3	0.9231
AT2G23360			Plant protein of unknown funct...		Lus10004994 [exp]	7.3	0.9375
AT5G41140			Myosin heavy chain-related pro...		Lus10001481 [exp]	7.7	0.9269
AT1G29170		ATSCAR3, WAVE2	WASP \(WISKOTT-ALDRICH SYNDROM...		Lus10001897 [exp]	7.7	0.9198
AT4G35240			Protein of unknown function (D...		Lus10016004 [exp]	8.7	0.9344
AT5G42710			unknown protein		Lus10010806 [exp]	10.4	0.9229

Compare expression of checked genes

Lus10016091 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.