Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08030 466 / 7e-163 AQC1, TPST active quiescent center1, tyrosylprotein sulfotransferase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G011400 [exp] 511 / 1e-180 AT1G08030 525 / 0.0 active quiescent center1, tyrosylprotein sulfotransferase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF03567 [flax] [poplar] Sulfotransfer_2 Sulfotransferase family
Representative CDS sequence Show only first row Show all	>Lus10016093 pacid=23171837 polypeptide=Lus10016093 locus=Lus10016093.g ID=Lus10016093.BGIv1.0 annot-version=v1.0 ATGGCTCCTGCTCTCAGACTAGCTCTGGTTTTGGTGCTTGCTTTTGCAATTGCAAGCGTCTTTGCTGACGAAGAAGATAGTTTCGGACGGTGTGAAACTG CTGTCTTGAAGTGGTCATCCTCTGCTCTTGAACAAGAAGCCAAGGAGGATAAGCATACGCTTCGAGATCTCTTGTTTTTTCTCCATATTCCGAGGACTGG AGGCCGGACGTACTTCCACTGTTTCTTGAGAAGGCTGTACTCTGTCTCAGATGAGTGTCCCCGCTCGTACGATAAGCTACGGTTTGACCCGAGCAAAGAA AAGTGCAGGCTGTTGGTTACTCACGATGACTACAGCATGATATCCAAACTTCCCAAGGAGAGAACTTCTATGGTGACCATACTCAGGAATCCAGTCGACC GTGTCTTTAGTGCTTATGAATTTTCGATCGAAGTAGCAGCTAGGTTTTTGGTGCATCCTAACTTGACATCCGCCACTCGAATGTCTACTCGTGTGCGTCC TAAATCGACTGGAATTAGTACACTGGACATATGGCCTTGGAAATTCTTGGCTCCATGGATGATGCAAGACCTGTTCTCTAGGAGGGATGCAAGAAGGCTT GAAGACTCAGATAATCCTACGAGCAATGATCCATATAGCATGCGGGAAATGGCGATGCCGTTAATTGACTATATAAATGACCCTATAGCTCATGACATTA TTCACAACGGCGCAACATTTCAGGTTGCTGGAATAACCAACAATTCCTACTATCCAGAAGCACACGAAGTTCGTCACTGTGTTCGGAAATACACGGTTTT GGGAAACTATATTCTTCAAGTTGCCAAGAAGAGGTTGGATGATATGCTGTATGTTGGTATCACCGAGGATCACAAAGAGTCCGCGACAATGTTCGCAAAT GTGGTTGGATCGCAGGTGATATCCCAGACATTAGCATCAAACTCCACCGAGGAAAGTGCAGCTGACGAAAAATCAGCTCCAGAGCACAGCAGTTTGAACT CCGATCCCGAGACTGACCACGAGGACCGTCAGACGAACACCTCAGCTCCTTCTGTAGAAAATTCGAGTGACAATAAGGGAAATATGACGGTTGAGAAACT CATGGTGACGTACGAGAAATGCATAACACAAACCTCTCACCAGCCTCGACGAGGAGCTCTATGA
AA sequence Show only first row Show all	>Lus10016093 pacid=23171837 polypeptide=Lus10016093 locus=Lus10016093.g ID=Lus10016093.BGIv1.0 annot-version=v1.0 MAPALRLALVLVLAFAIASVFADEEDSFGRCETAVLKWSSSALEQEAKEDKHTLRDLLFFLHIPRTGGRTYFHCFLRRLYSVSDECPRSYDKLRFDPSKE KCRLLVTHDDYSMISKLPKERTSMVTILRNPVDRVFSAYEFSIEVAARFLVHPNLTSATRMSTRVRPKSTGISTLDIWPWKFLAPWMMQDLFSRRDARRL EDSDNPTSNDPYSMREMAMPLIDYINDPIAHDIIHNGATFQVAGITNNSYYPEAHEVRHCVRKYTVLGNYILQVAKKRLDDMLYVGITEDHKESATMFAN VVGSQVISQTLASNSTEESAADEKSAPEHSSLNSDPETDHEDRQTNTSAPSVENSSDNKGNMTVEKLMVTYEKCITQTSHQPRRGAL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08030		AQC1, TPST	active quiescent center1, tyro...		Lus10016093 [exp]	0	1
					Lus10013650 [exp]	1.4	0.9155
					Lus10013649 [exp]	2.0	0.8909
AT1G28520	VOZ	ATVOZ1, VOZ1	vascular plant one zinc finger...		Lus10017700 [exp]	2.8	0.8555
AT5G18580		FASS2, TON2, GD...	GORDO, FASS 1, EMBRYO DEFECTIV...		Lus10002884 [exp]	3.0	0.8136
AT1G78690			Phospholipid/glycerol acyltran...		Lus10004768 [exp]	4.5	0.8528
AT5G44960			F-box/RNI-like/FBD-like domain...		Lus10015246 [exp]	4.6	0.8645
AT3G10230		AtLCY, LYC	lycopene cyclase (.1.2)		Lus10005190 [exp]	4.9	0.8178
AT2G24520		AHA5	H\(+\)-ATPase 5, H\(+\)-ATPase...		Lus10020148 [exp]	5.5	0.8102
					Lus10024480 [exp]	6.0	0.8263
					Lus10002071 [exp]	6.5	0.7677

Compare expression of checked genes

Lus10016093 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.