Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28320 924 / 0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1) AT3G54800 795 / 0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1), Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.2) AT4G19040 346 / 3e-108 EDR2 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) AT5G45560 334 / 8e-104 Pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein (.1) AT5G35180 263 / 1e-76 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) AT1G06050 181 / 6e-51 Protein of unknown function (DUF1336) (.1) AT5G10750 179 / 1e-50 Protein of unknown function (DUF1336) (.1) AT5G24990 162 / 1e-44 Protein of unknown function (DUF1336) (.1) AT5G25010 161 / 2e-44 Protein of unknown function (DUF1336) (.1) AT5G25020 124 / 2e-31 Protein of unknown function (DUF1336) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021465 [exp] 1348 / 0 AT2G28320 1056 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1) Lus10040406 [exp] 766 / 0 AT2G28320 922 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1) Lus10023522 [exp] 717 / 0 AT2G28320 883 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1) Lus10007596 [exp] 335 / 7e-104 AT4G19040 1217 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) Lus10012149 [exp] 329 / 1e-101 AT4G19040 1227 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) Lus10040015 [exp] 278 / 4e-82 AT5G35180 1034 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) Lus10019591 [exp] 215 / 1e-59 AT5G35180 931 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) Lus10019068 [exp] 209 / 6e-59 AT5G35180 589 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) Lus10040011 [exp] 199 / 8e-54 AT5G35180 820 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G011200 [exp] 1034 / 0 AT2G28320 1071 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1) Potri.010G223400 [exp] 809 / 0 AT3G54800 922 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1), Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.2) Potri.008G038800 [exp] 791 / 0 AT3G54800 922 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1), Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.2) Potri.018G113100 [exp] 268 / 1e-78 AT5G35180 1028 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) Potri.001G132900 [exp] 227 / 5e-64 AT4G19040 1159 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) Potri.003G100600 [exp] 223 / 2e-62 AT4G19040 1182 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) Potri.008G213000 [exp] 218 / 2e-60 AT4G19040 1017 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) Potri.018G014234 [exp] 184 / 3e-52 AT5G10750 428 / 5e-152 Protein of unknown function (DUF1336) (.1) Potri.017G027700 [exp] 167 / 6e-46 AT1G06050 399 / 4e-140 Protein of unknown function (DUF1336) (.1) Potri.007G130400 [exp] 166 / 8e-46 AT1G06050 390 / 1e-136 Protein of unknown function (DUF1336) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0266 [flax] [poplar] PH PF00169 [flax] [poplar] PH PH domain CL0209 [flax] [poplar] Bet_v_1_like PF01852 [flax] [poplar] START START domain CL0209 [flax] [poplar] PF07059 [flax] [poplar] DUF1336 Protein of unknown function (DUF1336)
Representative CDS sequence Show only first row Show all	>Lus10016094 pacid=23171838 polypeptide=Lus10016094 locus=Lus10016094.g ID=Lus10016094.BGIv1.0 annot-version=v1.0 ATGGAGGTGGTGCCGGTGGTGCCGGTGGAGCAAGAGGAGAAGGTGATGGAAGGTTGGATGTACGTGTTGCGGCACAATCGGATTGGATTGCAGTACTCTA CTAAGCGTTACTTCATTCTTCAAGATCACCTTCTCAAGAGCTTCAAGTCGCTCCCTGCTTCTAAAGACCAGGATCCTCTCAGAAGTGCGATCATAGATTC CTGTACTCGAGTAACCGAGAATGGAAGAGAGACTGTTAATAGAAAAGTACTCTTTGTTTTTACTCTCTTTAACACTTCAAATCACAGTGATCAACTTAAG TTGGGAGCAACCAGTCCTGAGGAAGCAGCAAAGTGGATTCACTTATTTCAAGAGGCAGCTCTGAAGGGAAGTCATATTGCTGTAGGTTCTTCAAGGAGCA CTTGGCAGTCCTTCCGATTGACTGAATCCCGACGAGTACGACAGAGTAGATCGATAGATTGGACGCTCTGTTCAGCTTCAACCACACATACTGATCCAGT GAATGATGTGATTGCACCTTCATCATGGACAATTTTCGGATGTCAAAATGGTTTACGGCTCTTTAAAGAAACAAAAGATAGGGATTCCCATGGTAAGTGG AATGATAATCCTGCAATCATGGCAGTGGGTGTGGTTGATGGAGCCTCAGAATCCATATTCCAAACGCTTATGTCTCTTGGTCCTACAAGATCAGAATGGG ACTTCTGTTTCTACAAAGGAAGTGTGGTTGAGCATCTTGATGGCCATACTGATATTGTTCACAAGCAACTCTACAATGACTGGCTATCGTGGGGAATGAA ACGAAGAGACTTTTTGTTGCGGCGGTACTGGAGAAGGGAGGATGATGGAACCTACGGTAGGATACTGTTATCCTCTACCACTCTGTATTTCACAAGAAGT GTCCACCACAAAAAGGCTATGTTCGTGCTTGCCTTAAAAGTAATGTGGTGGATATGTCATTTCTCCATTGAACCAAGGCAAAAGATCCGTAATGTCATTT CTCCATTGAACCAAGGTAAAAGATCCGTGGTAAAGCACATGCTTGCAGTTGACTGGAAATTATGGAGGTCGTACATACGATCTTCTTCATCCAGAACTAT TACTACTAAAATGCTTGGAAGAGTTGCTGCACTAAGGGAATTGTTCCGGACAAAGTCGGGAGCTTGTACGATCCCCGATTTTTCATCAGGAGAGTTGGCG GGTAGCGCACTGAACAGGGCTGTTGTGGATGTGGAAACTTACGATGCTCAAATGGAAACCGATGAATATGTGAAGGCAAACATGTGTCAGAACGAAGAAG CAGCAGATAAGGCATCTTCGGAACATGCGAGCATAGGGGGCCTGAATGATGCTGCTGACGAGTTTTTTGACGTTCCAGAACCTTCCGATAGTGAATGCTG GAGTTATGATTTTGGATCAGAAGCAAGCTCTCAGGACTTGCGTCAGCCTAAGTTATCTTCAGCCGCTGTTTTTGTCAAGAAATTGCATGATCTTGCTGTT CAGAAGAGGGGATATGTGGACTTACATGACATGGCTAGAGAAGACAATAATATATCATGCGGCGGCTACGGGACCACTCTTCCTAAAGATGAAACTTATA ACTTGCTTTCCAGCTGGGCAATGACTGATCCTTCGACGTTTTTGATTCGTGGAAAGAACTATTTGCACGACCAAAAGAAGATCAAGGCAAAAGGCACTTT GATGCAGATGGTTGCTGCAGATTGGCTAAAATCCGACAAGCGAGAAGACGATTTAGCTGGCCGTCCTGGGAGCATCGTTCAGAAATATGCAGCTCAAGGT GGCCCTGAGTTCTTCTTGATCATAAACATACAAGTCCCAGGCTCTACAACATACAGTCTTGCTCTGTACTTCATGATGAACACGCCTTTGGAAGACTCAC CTTTACTACAAAGCTTCGTAAATGGGGACGATGCATTCAGGAACTCGAGGTTTAAGCTCATTCCTTACATATCAAAGGGCTCGTGGATAGTGAAACAGAG CGTTGGGAAGAAAGCCTGTCTAATCGGCCAAGCACTGGAAATGAATTATTTCCGCGGGAAGAACTACCTTGAGCTTGGGGTGGACATAGGATCATCGACA GTTGCGCGAGGAGTGGTTAGTCTTGTCCTTGGTTACCTCAGCAATCTGGTAATCGAAATGGCTTTCTTGGTTCAGGCTGACACGGACGAGGAGCTGCCCG AGTACCTGCTGGGGACTTGCCGGTTGAACCATCTCGACGCATCGAAAGCTGTTTCGTTGAGACAATGA
AA sequence Show only first row Show all	>Lus10016094 pacid=23171838 polypeptide=Lus10016094 locus=Lus10016094.g ID=Lus10016094.BGIv1.0 annot-version=v1.0 MEVVPVVPVEQEEKVMEGWMYVLRHNRIGLQYSTKRYFILQDHLLKSFKSLPASKDQDPLRSAIIDSCTRVTENGRETVNRKVLFVFTLFNTSNHSDQLK LGATSPEEAAKWIHLFQEAALKGSHIAVGSSRSTWQSFRLTESRRVRQSRSIDWTLCSASTTHTDPVNDVIAPSSWTIFGCQNGLRLFKETKDRDSHGKW NDNPAIMAVGVVDGASESIFQTLMSLGPTRSEWDFCFYKGSVVEHLDGHTDIVHKQLYNDWLSWGMKRRDFLLRRYWRREDDGTYGRILLSSTTLYFTRS VHHKKAMFVLALKVMWWICHFSIEPRQKIRNVISPLNQGKRSVVKHMLAVDWKLWRSYIRSSSSRTITTKMLGRVAALRELFRTKSGACTIPDFSSGELA GSALNRAVVDVETYDAQMETDEYVKANMCQNEEAADKASSEHASIGGLNDAADEFFDVPEPSDSECWSYDFGSEASSQDLRQPKLSSAAVFVKKLHDLAV QKRGYVDLHDMAREDNNISCGGYGTTLPKDETYNLLSSWAMTDPSTFLIRGKNYLHDQKKIKAKGTLMQMVAADWLKSDKREDDLAGRPGSIVQKYAAQG GPEFFLIINIQVPGSTTYSLALYFMMNTPLEDSPLLQSFVNGDDAFRNSRFKLIPYISKGSWIVKQSVGKKACLIGQALEMNYFRGKNYLELGVDIGSST VARGVVSLVLGYLSNLVIEMAFLVQADTDEELPEYLLGTCRLNHLDASKAVSLRQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28320			Pleckstrin homology (PH) and l...		Lus10016094 [exp]	0	1
AT5G64500			Major facilitator superfamily ...		Lus10011580 [exp]	1.4	0.8847
AT1G12450			SNARE associated Golgi protein...		Lus10028900 [exp]	2.8	0.8480
AT5G06560			Protein of unknown function, D...		Lus10012288 [exp]	4.5	0.8475
AT5G64220	CAMTA		Calmodulin-binding transcripti...		Lus10036162 [exp]	6.0	0.8549
AT1G69360			Plant protein of unknown funct...		Lus10036807 [exp]	7.2	0.8043
AT2G30910		ARPC1B, ARPC1, ...	actin-related protein C1A (.1....		Lus10031375 [exp]	8.8	0.8061
AT1G59820		ALA3	aminophospholipid ATPase 3 (.1...		Lus10036682 [exp]	8.9	0.8097
AT4G33240		FAB1A	FORMS APLOID AND BINUCLEATE CE...		Lus10038127 [exp]	9.0	0.8499
AT5G57190		PSD2	phosphatidylserine decarboxyla...		Lus10009324 [exp]	11.0	0.8382
AT3G16090		AtHrd1A	homolog of yeast Hrd1, RING/U-...		Lus10023477 [exp]	11.5	0.8057

Compare expression of checked genes

Lus10016094 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.