Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28260 671 / 0 ATCNGC15 cyclic nucleotide-gated channel 15 (.1) AT2G24610 486 / 2e-164 ATCNGC14 cyclic nucleotide-gated channel 14 (.1) AT4G30360 486 / 3e-164 ATCNGC17 cyclic nucleotide-gated channel 17 (.1) AT4G30560 460 / 2e-154 ATCNGC9 cyclic nucleotide gated channel 9 (.1.2) AT5G53130 459 / 5e-154 ATCNGC1, CNGC1 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) AT2G23980 458 / 3e-153 ATCNGC6 CYCLIC NUCLEOTIDE GATED CHANNEL 6, cyclic nucleotide-gated channel 6 (.1) AT4G01010 446 / 3e-149 ATCNGC13 cyclic nucleotide-gated channel 13 (.1) AT5G57940 446 / 9e-149 ATCNGC5 cyclic nucleotide gated channel 5 (.1.2.3) AT3G48010 444 / 3e-148 ATCNGC16 cyclic nucleotide-gated channel 16 (.1) AT5G14870 444 / 4e-148 ATCNGC18 cyclic nucleotide-gated channel 18 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021461 [exp] 920 / 0 AT2G28260 1029 / 0.0 cyclic nucleotide-gated channel 15 (.1) Lus10037394 [exp] 749 / 0 AT2G28260 983 / 0.0 cyclic nucleotide-gated channel 15 (.1) Lus10041319 [exp] 545 / 0 AT2G28260 800 / 0.0 cyclic nucleotide-gated channel 15 (.1) Lus10015510 [exp] 508 / 1e-172 AT4G30360 1004 / 0.0 cyclic nucleotide-gated channel 17 (.1) Lus10019983 [exp] 500 / 1e-169 AT4G30360 1000 / 0.0 cyclic nucleotide-gated channel 17 (.1) Lus10023203 [exp] 498 / 7e-167 AT4G30360 1002 / 0.0 cyclic nucleotide-gated channel 17 (.1) Lus10042434 [exp] 466 / 4e-156 AT2G24610 916 / 0.0 cyclic nucleotide-gated channel 14 (.1) Lus10026233 [exp] 464 / 1e-155 AT2G24610 922 / 0.0 cyclic nucleotide-gated channel 14 (.1) Lus10002363 [exp] 462 / 2e-155 AT3G48010 919 / 0.0 cyclic nucleotide-gated channel 16 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G010700 [exp] 700 / 0 AT2G28260 1052 / 0.0 cyclic nucleotide-gated channel 15 (.1) Potri.018G097600 [exp] 509 / 4e-174 AT4G30360 1015 / 0.0 cyclic nucleotide-gated channel 17 (.1) Potri.017G067000 [exp] 464 / 2e-156 AT3G48010 964 / 0.0 cyclic nucleotide-gated channel 16 (.1) Potri.018G009200 [exp] 459 / 2e-155 AT2G24610 939 / 0.0 cyclic nucleotide-gated channel 14 (.1) Potri.018G106100 [exp] 459 / 8e-154 AT5G57940 1030 / 0.0 cyclic nucleotide gated channel 5 (.1.2.3) Potri.012G002200 [exp] 448 / 1e-149 AT5G53130 1087 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Potri.013G108200 [exp] 446 / 2e-149 AT5G14870 949 / 0.0 cyclic nucleotide-gated channel 18 (.1) Potri.015G019100 [exp] 445 / 1e-148 AT5G53130 1024 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Potri.014G097900 [exp] 431 / 6e-143 AT1G01340 901 / 0.0 cyclic nucleotide gated channel 10 (.1.2) Potri.003G183000 [exp] 431 / 7e-143 AT1G19780 893 / 0.0 cyclic nucleotide gated channel 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0030 [flax] [poplar] Ion_channel PF00520 [flax] [poplar] Ion_trans Ion transport protein
Representative CDS sequence Show only first row Show all	>Lus10016097 pacid=23171827 polypeptide=Lus10016097 locus=Lus10016097.g ID=Lus10016097.BGIv1.0 annot-version=v1.0 ATGGCGTTCATGTTTAGAGATGATCCTGAACTTACAAAACATCCAACAAAGAACAATCCAGACAACACCACACTAAAAAGGCTAAAGTACAAAATAGCCG GCACTCAAATACCAGACCCTACCCGGCCCGGCCGATCGCTAAAGGCGAAAGTCCTGTCTCGAGTCTTCTCGGAGGACTACGAGAGGGTGAAGAGGAACAT ACTCGACCCTCGAGGGGAGACGGTCAGAAGATGGTCCAAGATCTTCTTAGTGGCATGTTTGGTCTCTTTGTTTGTTGACCCTCTCTTCTTCTACTTGCCT AGAGTCAGAAGCCATGAAGCATGCATAGAGATAGGGAGGCCGCTTGAGTTCACTCTCACAATACTTAGATCAGTAGCTGATGCCTTCTACATGGTTCATA TTTACATCAAGTTCCGTACCGCTTATGTCGCGCCTAGTTCTCGAGTTTTCGGAAGAGGTGAGCTCGTTATCGACCCCGAGAAGATCGCCAACCGGTACCT TAGGTGGAACTTCTGGCTTGACCTCGTTGCTGCCCTCCCTTTGCCTCAGGTACTGATATGGCTAATCATACCGAACCTCGAAGGTTCGACCATGGCTAAC ACGAAAAACGTCCTCCGATTCATCATCATTTTCCAGTACCTCCCAAGGCTTTACCTGATTTTCCCACTCTCTTCACAAATTGTTAAGGCCACTGGCTTTG TGACTGAGACTGCTTGGGCTGGTGCTGCTTATAACTTGATGCTTTACATGCTAGCAAGCCATGTTTTAGGAGCTTGCTGGTACCTACTATCAATTGAAAG ACAAGAGTCATGCTGGCTGAGTGCCTGTGACAAGGAGAAGCCAACTTGCAACTTCAAGTTCTTTGATTGCAACTTGGTAGGTGATCATTCGAGGGTTTCC TGGTTCGAGTCGAGCAACTCCTCGAGCCTTTGCAAACCGGATAACGGGTTCTACCAGTTCGGTATCTATGACGATGCTGCCACTTTCGGTGTTTCGACCA CCTCGTTCTTCGATAAGTACTTCTACTGCCTCTGGTGGGGCTTAAAGAACCTTAGCTCGTTAGGGCAGAACCTTTCGACGAGCACTTATGTGGGAGAGAT CGCATTCGCCATCGTTGTTGCAATCCTCGGCTTGGTCCTTTTTGCATTGCTCATTGGGAACATGCAGACATACTTGCAATCAACAACTGTCAGGCTGGAA GAGTGGAGGATCAAGAAAACTGACACAGAACAATGGATGCACCATAGGCACCTGCCTCCTGAGCTCAGGAATTCTGTCAGGAAATATGATCAGTACAAGT GGCTTGCGACTCGAGGTGTCGACGAAGAAAACCTCCTCAAGGGACTCCCCTTGGACCTCCGTCGAGACATCAAACGACACCTCTGCCTTGACCTTGTTCG CCGTGATTTGGTGAAGGATCTGGTGACTAAATCTCTCATGTTGCAAGTTGTCTTGTTGAATCCAAACTCATGGAGCTCTACCGGCATTCGCTTGGACTCT GCCGAATCCGTTTCGAAGCTGAATATGAGACCAGTAGTTAAAGTTCCGTTCTCCAGCTGTTGGAATGGTGCATACTGGAGGGTGAAGCATACTGCAGATG AAGCATTCATCGTGAAACCTCTAATCAATGAGCTTATCAATGCCTTGGAGACTTGTTGTAAGCATCATCTTCCCGCTTCGTTCGCCCAAGTCGAGAATAT GACATTGTCTACCCTCTTGAGTACGTTTGATGAATTTGTTGTGCTGCTGATAGAATATCAAAGTGTGTTGTTATCTTACTCAGAAACTCGAGGTCACTAG
AA sequence Show only first row Show all	>Lus10016097 pacid=23171827 polypeptide=Lus10016097 locus=Lus10016097.g ID=Lus10016097.BGIv1.0 annot-version=v1.0 MAFMFRDDPELTKHPTKNNPDNTTLKRLKYKIAGTQIPDPTRPGRSLKAKVLSRVFSEDYERVKRNILDPRGETVRRWSKIFLVACLVSLFVDPLFFYLP RVRSHEACIEIGRPLEFTLTILRSVADAFYMVHIYIKFRTAYVAPSSRVFGRGELVIDPEKIANRYLRWNFWLDLVAALPLPQVLIWLIIPNLEGSTMAN TKNVLRFIIIFQYLPRLYLIFPLSSQIVKATGFVTETAWAGAAYNLMLYMLASHVLGACWYLLSIERQESCWLSACDKEKPTCNFKFFDCNLVGDHSRVS WFESSNSSSLCKPDNGFYQFGIYDDAATFGVSTTSFFDKYFYCLWWGLKNLSSLGQNLSTSTYVGEIAFAIVVAILGLVLFALLIGNMQTYLQSTTVRLE EWRIKKTDTEQWMHHRHLPPELRNSVRKYDQYKWLATRGVDEENLLKGLPLDLRRDIKRHLCLDLVRRDLVKDLVTKSLMLQVVLLNPNSWSSTGIRLDS AESVSKLNMRPVVKVPFSSCWNGAYWRVKHTADEAFIVKPLINELINALETCCKHHLPASFAQVENMTLSTLLSTFDEFVVLLIEYQSVLLSYSETRGH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28260		ATCNGC15	cyclic nucleotide-gated channe...		Lus10016097 [exp]	0	1
AT1G09570		FHY2, HY8, FRE1...	ELONGATED HYPOCOTYL 8, FAR RED...		Lus10007594 [exp]	1.7	0.9496
AT4G21910			MATE efflux family protein (.1...		Lus10039673 [exp]	4.0	0.9296
AT4G14368			Regulator of chromosome conden...		Lus10027273 [exp]	5.7	0.8928
AT1G10740			alpha/beta-Hydrolases superfam...		Lus10030904 [exp]	6.7	0.9090
					Lus10020564 [exp]	6.8	0.9389
AT1G75540	CO	LHUS, AtBBX21, ...	long hypocotyl under shade, B-...		Lus10033184 [exp]	8.1	0.8872
AT3G50830		ATCOR413-PM2, C...	cold-regulated 413-plasma memb...		Lus10012034 [exp]	8.5	0.8854
AT4G09960	MADS	AGL11, STK	SEEDSTICK, AGAMOUS-like 11, K-...		Lus10009481 [exp]	8.8	0.9004
AT1G70580		GGT2, AOAT2	GLUTAMATE:GLYOXYLATE AMINOTRAN...		Lus10006203 [exp]	8.8	0.9373
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10018721 [exp]	9.1	0.8591

Compare expression of checked genes

Lus10016097 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.