Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28250 530 / 0 NCRK Protein kinase superfamily protein (.1.2) AT3G58690 235 / 8e-71 Protein kinase superfamily protein (.1) AT1G10620 232 / 1e-66 AtPERK11 proline-rich extensin-like receptor kinase 11, Protein kinase superfamily protein (.1) AT4G02010 231 / 4e-66 Protein kinase superfamily protein (.1) AT5G38560 230 / 5e-66 AtPERK8 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) AT4G34500 221 / 4e-65 Protein kinase superfamily protein (.1) AT1G23540 228 / 7e-65 IGI1, AtPERK12 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) AT1G70460 226 / 2e-64 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) AT1G24030 216 / 7e-64 Protein kinase superfamily protein (.1.2) AT5G02800 210 / 1e-61 CDL1 CDG1-like 1, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021460 [exp] 1159 / 0 AT2G28250 590 / 0.0 Protein kinase superfamily protein (.1.2) Lus10013014 [exp] 223 / 7e-66 AT1G23540 572 / 0.0 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) Lus10029151 [exp] 223 / 2e-65 AT1G23540 575 / 0.0 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) Lus10029948 [exp] 219 / 9e-64 AT1G54820 469 / 1e-162 Protein kinase superfamily protein (.1) Lus10004461 [exp] 218 / 3e-63 AT1G54820 465 / 4e-161 Protein kinase superfamily protein (.1) Lus10011466 [exp] 228 / 5e-63 AT2G47330 1110 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10043219 [exp] 221 / 5e-63 AT3G24550 688 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10040459 [exp] 215 / 6e-63 AT4G34500 549 / 0.0 Protein kinase superfamily protein (.1) Lus10013013 [exp] 221 / 4e-62 AT1G70460 596 / 0.0 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G212600 [exp] 714 / 0 AT2G28250 588 / 0.0 Protein kinase superfamily protein (.1.2) Potri.009G010400 [exp] 709 / 0 AT2G28250 597 / 0.0 Protein kinase superfamily protein (.1.2) Potri.013G025700 [exp] 228 / 6e-68 AT1G54820 438 / 7e-152 Protein kinase superfamily protein (.1) Potri.014G143100 [exp] 226 / 2e-67 AT3G58690 573 / 0.0 Protein kinase superfamily protein (.1) Potri.014G119100 [exp] 227 / 9e-65 AT4G02010 993 / 0.0 Protein kinase superfamily protein (.1) Potri.008G145900 [exp] 218 / 9e-65 AT1G24030 587 / 0.0 Protein kinase superfamily protein (.1.2) Potri.002G194700 [exp] 226 / 2e-64 AT4G02010 958 / 0.0 Protein kinase superfamily protein (.1) Potri.001G204000 [exp] 214 / 3e-63 AT1G52540 427 / 7e-150 Protein kinase superfamily protein (.1) Potri.005G036600 [exp] 216 / 4e-63 AT1G54820 434 / 4e-150 Protein kinase superfamily protein (.1) Potri.014G026100 [exp] 218 / 6e-63 AT4G02630 608 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10016098 pacid=23171807 polypeptide=Lus10016098 locus=Lus10016098.g ID=Lus10016098.BGIv1.0 annot-version=v1.0 ATGAAGGTCCACGTAGAAGTCGCGTTTGCCTGTCTTTTAGCCTTCATTTTATTGCCCCAAGGTTACTGTGACCAACTTTCTACCCCACCAGGCATAAAAA ACTGGACATGTGCGTGTTCGTTGTCATATCCAGGAAATCAGAGCTATGTTAGCTCCAACTGTTCTCAGTCCTGTGATTGCAATCAAGCCAATGGAGATAT ATGGACATGCACATGTCCAGCTGATGGACTTCCGAGAATAACCGATTCGAGTCATGATTCGACCTGTTTTACTGCATGCAACTGCACTATTGGATCTCTG ACTGGACTCAGAACTGCACCAAAGAAACACATCGCGAGCAGGGTCCTTGTCATCATTCTGCTACTTTGCGTCATACTCACAACTCTGGCATTTGTAGCTT CTGTGACATTTTACGTCTACAGAAGGGAGAAGTTCCTTGTTGAATCACCTGGGTTCTCCTCAGATAGACTAGCGAGTTTCAGTAGTAGAACCCATTTGAT AAGTCAGAGAACGTATTCCACTGGATCAGATTACAAAGGAAGCAGCATCAGTTGCCCCACTAATTCCGTCTCAGGGTGTTTTGGCAAGGCTTCTTTCCTA TGCGGGAACAAGAAAGACGTTGTGTACGGAGTCATAAGCCGGTTTTCATACCCCGAGCTGGAATATGCAACCGAGAAGTTTTCAGATTCCAATCTCATAG GATGTGGGGGAAGCAGCTTCGTTTATCGTGGCCTGCTACGAGATGGTACGAGTGTGGCCATCAAACGACTGGTGGCTCACAAGGGACCTGATTTCAAGTC GGTTTTTTCGACAGAGGTTGAATTGCTGTCCAGGCTCAATCACTGCCATGTTGTGCCTTTGCTTGGTTACTGCTCAGAGTTTCAAGGAAAGCATTCCGAG AGGTTGCTCGTATTCGAGTACATGCCTAACGGCAACCTGAGAGATAGCTTGGACGGCACTCTAGGCGAAAACTTGACGTGGGAAATTCGTGTCATGATTG CCATAGGAGCTGCAAGGGGCTTGGAATATCTCCATGCAGCAGCTGCCCCTAGAATCTTGCATCGAGACGTCAAGTCCACAAACATCCTCCTCGACGAAAG TTGGAGAGCTAAGGTAAGAGGATTGCAATGTCTCCCTGCTCATAGAGAAGACCTTGATGATAATGTGACTCGAACTACACGATATGCGCAGATTACGGAT CTTGGCATGGCGAAATGCGTACGAGGAGATGATGCCCCGAGTAGTTCCAGTTCTCCAGCCAGAATGCAGGGCACTTTCGGATATTTTGCACCCGAGTATG CTATGATCGGCAGGGCTTCCCTTATGTCTGATGTCTTCAGTTTCGGAGTGGTACTTCTTGAGCTTATCACTGGTCGACACCCGATCCATAAAACTCAGAA CAAAGGCGAAGAAAGCCTCGTCTTTTGGGCAACCCCGAGACTGCTAGATAGCAGGCGAGTAATATCCGAGCTGCCCGATCCACGGCTGAAGGGGTTCCCA GAAGAGGAGATGCATATAATGGCTTACCTAGCAAAAGAGTGCCTATTACTAGATCCTGATGCTAGACCGACTATGAGCGAGGTTGTCCAAATCCTTTCGA CAATGGTACCCGACAAATCCAGCCGCAGAAACATCCCAGTCAGCCTCTATCAGATGCCTTCCACCGACAGCTTGAGAAGCGAACCATCATTCATCGACAA AACCGAACTGGTAAACGAAGTTCATGTCGACTCAAACGAACCAACCGAAGCTAAGTTAACGAGTCTTCAGTCATCCAACCGAAACGTGGATCATAATCAT GAAGCAGCAATAGACATTATAGAGCCTAGCCGAGTTAGCGATGTGAATAATAAACCAGATACTGTTTCAGCCGAGTATATGAAGAGGCTGATCCACTTGA CTAATTCAAATCCCTGTACCTCGGAAGATGAAGTGGTCGACATAACCGAGCCTCGCTTCGAGTCGTTTCGTGTTGCGAATATGAAATCACCCCCGAGATA A
AA sequence Show only first row Show all	>Lus10016098 pacid=23171807 polypeptide=Lus10016098 locus=Lus10016098.g ID=Lus10016098.BGIv1.0 annot-version=v1.0 MKVHVEVAFACLLAFILLPQGYCDQLSTPPGIKNWTCACSLSYPGNQSYVSSNCSQSCDCNQANGDIWTCTCPADGLPRITDSSHDSTCFTACNCTIGSL TGLRTAPKKHIASRVLVIILLLCVILTTLAFVASVTFYVYRREKFLVESPGFSSDRLASFSSRTHLISQRTYSTGSDYKGSSISCPTNSVSGCFGKASFL CGNKKDVVYGVISRFSYPELEYATEKFSDSNLIGCGGSSFVYRGLLRDGTSVAIKRLVAHKGPDFKSVFSTEVELLSRLNHCHVVPLLGYCSEFQGKHSE RLLVFEYMPNGNLRDSLDGTLGENLTWEIRVMIAIGAARGLEYLHAAAAPRILHRDVKSTNILLDESWRAKVRGLQCLPAHREDLDDNVTRTTRYAQITD LGMAKCVRGDDAPSSSSSPARMQGTFGYFAPEYAMIGRASLMSDVFSFGVVLLELITGRHPIHKTQNKGEESLVFWATPRLLDSRRVISELPDPRLKGFP EEEMHIMAYLAKECLLLDPDARPTMSEVVQILSTMVPDKSSRRNIPVSLYQMPSTDSLRSEPSFIDKTELVNEVHVDSNEPTEAKLTSLQSSNRNVDHNH EAAIDIIEPSRVSDVNNKPDTVSAEYMKRLIHLTNSNPCTSEDEVVDITEPRFESFRVANMKSPPR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28250		NCRK	Protein kinase superfamily pro...		Lus10016098 [exp]	0	1
AT4G12610		RAP74, ATRAP74	transcription activators;DNA b...		Lus10017289 [exp]	9.2	0.6980
AT5G51480		SKS2	SKU5 similar 2 (.1)		Lus10027207 [exp]	11.7	0.7117
					Lus10019700 [exp]	12.1	0.7401
AT2G28470		BGAL8	beta-galactosidase 8 (.1.2)		Lus10000271 [exp]	24.1	0.6410
AT4G21215			unknown protein		Lus10006757 [exp]	26.6	0.7076
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10034098 [exp]	34.7	0.6541
AT1G29970		RPL18AA	60S ribosomal protein L18A-1 (...		Lus10013704 [exp]	35.3	0.6394
AT4G11280		ATACS6, ACS6	1-aminocyclopropane-1-carboxyl...		Lus10028760 [exp]	49.6	0.6409
AT4G12010			Disease resistance protein (TI...		Lus10029810 [exp]	50.7	0.5673
AT5G36930			Disease resistance protein (TI...		Lus10029811 [exp]	52.6	0.5970

Compare expression of checked genes

Lus10016098 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.