Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26750 376 / 2e-125 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021459 [exp] 858 / 0 AT3G26750 402 / 2e-135 unknown protein Lus10016097 [exp] 176 / 2e-48 AT2G28260 689 / 0.0 cyclic nucleotide-gated channel 15 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G019733 [exp] 448 / 8e-153 AT3G26750 385 / 9e-128 unknown protein Potri.007G019800 [exp] 444 / 2e-151 AT3G26750 388 / 5e-129 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0552 [flax] [poplar] Hect PF09814 [flax] [poplar] HECT_2 HECT-like Ubiquitin-conjugating enzyme (E2)-binding
Representative CDS sequence Show only first row Show all	>Lus10016099 pacid=23171811 polypeptide=Lus10016099 locus=Lus10016099.g ID=Lus10016099.BGIv1.0 annot-version=v1.0 ATGAACTCCGAAAACCCTAAAAAATGGCGATTTACATGGGAAGCTCAATCCCACGCTCCGAATCTGAAGCTATTCATCTTCAACCCAGACTCCAGACCTT CATCCGACTGCAGCAACCTCACTGTTCACCTGAAGCTCTCTCAATGCCACGTGCTCGTGAGCTGGATCGAGGAGGCTTCCACCGCCGGTGGGATGAAGGT CTCACTCAAGGTTCCGATTCCAAACGTCTTGATCGACTCGGAGATTCCTGTTACTTTCAGAGCTTTGGACGATCATATCGAAGTTAGAGTGGTGCTCCTC CTTCCCGTCGATCATCCTATCCTGTCGAGCTTCGATTCTTCGCTTGATTCGACCCCGCTCCAAATGAATTCTGATTTGATGAGATTATCATCGATGGAAG AAGGAGTGAAGTTCTACTGTAGGATGTGTTTAACTCAATTGACGAAAAGTGCCATTAGGAATTTTGAGGTAATGCCGTCTGAGAATTGGAGAGAAGTGGC TGATAACTGGTTTGGAGGTTGCTGTTGTTCATTTGGAGGTGTTGGTGAGGAGTTAGTGAATACTTTCGCTGATGCCTATGAATGTGAGAAAGGTCTTTGC TTGTTAAGCTCTCCGGCTTTTACTCTGTGCAAGGATGATCTCATCAGCTGTGAATTCAACGATTCTGATGTGACCAAGCACTGTGAGCCTGAAGAGATTC CAGTTTCTGGAACTTTTCATGAAGATGAGTTTCAAAATGGACAGGCATGTGCAAGGGATGATGGAGAAACGGTAAAATGTGAAGATCTCAGTGGCAAGAA TCAATGCTGTGGTTCGGAGTGTCATACCTCTGGTTATGAGCCATTGTTGATGCATGATGAAGCTACGAGAGCAACGATGTTCCCAGAACATCAGAAATCC TTTTTGAATGGCTTTCTTGGAGATGCTTTCATGGTTGGATCATACAACCAATCTGTGGATATAGGGTGGAAGGAGTTTCTTTGCCCTCAGTGTTCGTCAC TTCTAGGAGCTTACCCTGTCACTAATGGAGCTACTACCCCTGTGGATGACGGTATTCGACTCTTCAAATGCTCCATCTCAACCGATTTTCCAGCTTCCGG ACCAGATGACATTTTCAGGAGGTACACAATGGAGAAGATGTTCACAAACAAGCTAGTGGAGAATGCGAAAGACGAGATGTCATATCGGACTCTGGTGAAG GATCTAGTGACTAAATCTCCCATGCTGCACGTTGTCTTGTTGAATCCAAACTCATGGAGCTCTACGGGCATTTGCTTGGACGTTGCTGAATCCGTTACGA AGCTGAATCTGAGACCAGTAGTTAAAGTTTTGTTCTCCAGCTGTTGGAAAGGTGCAGAATGGGGGGTGAAGCATAGTGCAGATGAAACATTCATAGTGAA ACCTCTGATCAACGAGCTAATCAATGCCTTGGAGACTTGTAAGCATCATCTTCCTGCTTCGTTCGCCCAAGTCGAGGATATGACATTGTCAACTCTCTTG AGATAG
AA sequence Show only first row Show all	>Lus10016099 pacid=23171811 polypeptide=Lus10016099 locus=Lus10016099.g ID=Lus10016099.BGIv1.0 annot-version=v1.0 MNSENPKKWRFTWEAQSHAPNLKLFIFNPDSRPSSDCSNLTVHLKLSQCHVLVSWIEEASTAGGMKVSLKVPIPNVLIDSEIPVTFRALDDHIEVRVVLL LPVDHPILSSFDSSLDSTPLQMNSDLMRLSSMEEGVKFYCRMCLTQLTKSAIRNFEVMPSENWREVADNWFGGCCCSFGGVGEELVNTFADAYECEKGLC LLSSPAFTLCKDDLISCEFNDSDVTKHCEPEEIPVSGTFHEDEFQNGQACARDDGETVKCEDLSGKNQCCGSECHTSGYEPLLMHDEATRATMFPEHQKS FLNGFLGDAFMVGSYNQSVDIGWKEFLCPQCSSLLGAYPVTNGATTPVDDGIRLFKCSISTDFPASGPDDIFRRYTMEKMFTNKLVENAKDEMSYRTLVK DLVTKSPMLHVVLLNPNSWSSTGICLDVAESVTKLNLRPVVKVLFSSCWKGAEWGVKHSADETFIVKPLINELINALETCKHHLPASFAQVEDMTLSTLL R

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26750			unknown protein		Lus10016099 [exp]	0	1
AT3G16310			mitotic phosphoprotein N' end ...		Lus10037573 [exp]	6.7	0.8296
AT3G06790			plastid developmental protein ...		Lus10016825 [exp]	16.6	0.8526
AT5G59850			Ribosomal protein S8 family pr...		Lus10029461 [exp]	21.6	0.8441
AT3G58470			nucleic acid binding;methyltra...		Lus10000248 [exp]	22.1	0.8487
AT5G59850			Ribosomal protein S8 family pr...		Lus10005960 [exp]	22.2	0.8405
AT5G20950			Glycosyl hydrolase family prot...		Lus10008432 [exp]	29.8	0.8308
AT3G59990		MAP2B	methionine aminopeptidase 2B (...		Lus10005292 [exp]	36.2	0.8296
AT5G22330		ATTIP49A, RIN1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10040479 [exp]	41.2	0.8262
AT3G13920		RH4, TIF4A1, EI...	eukaryotic translation initiat...		Lus10037620 [exp]	42.0	0.8226
AT5G12110			Glutathione S-transferase, C-t...		Lus10026784 [exp]	45.8	0.8143

Compare expression of checked genes

Lus10016099 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.