Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60710 684 / 0 Zinc finger (C3HC4-type RING finger) family protein (.1) AT2G38970 610 / 0 Zinc finger (C3HC4-type RING finger) family protein (.1) AT3G54780 578 / 0 Zinc finger (C3HC4-type RING finger) family protein (.1), Zinc finger (C3HC4-type RING finger) family protein (.2), Zinc finger (C3HC4-type RING finger) family protein (.3) AT1G08050 527 / 6e-180 Zinc finger (C3HC4-type RING finger) family protein (.1) AT5G49665 189 / 5e-51 Zinc finger (C3HC4-type RING finger) family protein (.1) AT2G22680 172 / 2e-45 WAVH1 WAV3 homolog 1, Zinc finger (C3HC4-type RING finger) family protein (.1) AT5G65683 160 / 6e-41 WAVH2 WAV3 homolog 2, Zinc finger (C3HC4-type RING finger) family protein (.1) AT4G37890 71 / 2e-12 EDA40 embryo sac development arrest 40, Zinc finger (C3HC4-type RING finger) family protein (.1), Zinc finger (C3HC4-type RING finger) family protein (.2) AT1G19110 45 / 0.0002 inter-alpha-trypsin inhibitor heavy chain-related (.1) AT1G72500 44 / 0.0004 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021458 [exp] 1123 / 0 AT5G60710 738 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10041321 [exp] 774 / 0 AT5G60710 730 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10023527 [exp] 653 / 0 AT2G38970 887 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10040413 [exp] 625 / 0 AT2G38970 846 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10037391 [exp] 211 / 8e-63 AT5G60710 181 / 6e-52 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10037392 [exp] 189 / 4e-56 AT5G60710 157 / 7e-45 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10042930 [exp] 163 / 3e-42 AT5G49665 397 / 7e-129 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10003485 [exp] 157 / 4e-40 AT2G22680 522 / 9e-177 WAV3 homolog 1, Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10028224 [exp] 138 / 5e-36 AT5G49665 286 / 5e-91 Zinc finger (C3HC4-type RING finger) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G010350 [exp] 766 / 0 AT5G60710 763 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.008G038450 [exp] 667 / 0 AT2G38970 889 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.010G223766 [exp] 667 / 0 AT2G38970 892 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.001G082150 [exp] 468 / 1e-156 AT2G38970 466 / 4e-156 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.003G148400 [exp] 467 / 3e-156 AT2G38970 475 / 3e-159 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.002G107902 [exp] 173 / 3e-45 AT5G49665 675 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.016G001300 [exp] 152 / 3e-39 AT5G60710 156 / 1e-40 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.006G000900 [exp] 151 / 8e-39 AT3G54780 147 / 1e-37 Zinc finger (C3HC4-type RING finger) family protein (.1), Zinc finger (C3HC4-type RING finger) family protein (.2), Zinc finger (C3HC4-type RING finger) family protein (.3) Potri.010G118000 [exp] 45 / 3e-05 AT1G15100 142 / 7e-44 RING-H2 finger A2A (.1) Potri.003G068000 [exp] 47 / 5e-05 AT1G19110 734 / 0.0 inter-alpha-trypsin inhibitor heavy chain-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0128 [flax] [poplar] vWA-like PF00092 [flax] [poplar] VWA von Willebrand factor type A domain CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10016102 pacid=23171815 polypeptide=Lus10016102 locus=Lus10016102.g ID=Lus10016102.BGIv1.0 annot-version=v1.0 ATGGTGGATCTGAAGCAGAGCAAATGGAGGAAGGCAAAAATGGCGCTGGATTTCACCACTTGTCTCTACGCTCCTCGAACTACAGAGCGACAAGATGGAG AACACACCACCGGCGGCGAGAAGGAGCACCACTCGTCCGCCGCCAAGAGCTCGTCCGCATCTCACGCGCCACCGCCGCCGTTGTCTTCCTCCTCCAGCCT CCGCCTCTCCAAATCCGGACCTCTCTCCAAGTCGGGAAAGAGGACATGTGCAATATGCTTGACGAATATGAAGGCAGGACATGGCCATGCAATCTTTACT GCAGAATGCTCCCACTCTTACCATTTCCACTGCATCACATCGAATGTCAAGCATGGCAACCAAATCTGCCCGGTTTGCCGGGCGAAATGGAAAGAGGTTC CTTTCCAGTCTCCCCGGTCTGAGAATCCCGTTAGGAGGATACGATCCAACAATGTAGGATGGCAGCCGGATAACGAGTGGATGAATATTGTAAGACGAGT CCCTCCTCTTCGTCTCAATACTTCTACTAGCTCGTCTCTTCATCCCGAGCCAGCAGTTTTCGATGACGATGAAGCCTTAGCTCAAGAAAGAAGTGCTGAA AATGAAGAAAATGTTGGAACAAGAAGATTCATGGAGGTTAAAACATACACCGAATTTCCAGCAGTATCTCGGTACGCATCCCACAGCGATTTCTCCGTGT TGATTCATCTCAAGGCTCCACCAAAGGTGTCGGGAAGTTCTTCTCGCGTGCCAATCGATCTTATCACGGTGCTGGATACCAGTGGTAGCATGGCCGGTAC GAAGCTAGCATTATTGAAACGAGCGATGGGGTTCGTGATACAGAATCTCGCTCCATCCGATAGGCTTTCGGTGGTTACATTCTCATCATCTGCTCGTCGT GTTTTTCCTCTTCGTTGTATGTCTGAATCCGGAAAGAATGAGGCTTTACAGGCTGTTAATTCATTGCTCTCCAATGGCGGAACTAATATAGCCGAGGGAT TAAGGAAAGGTGCGAAGGTGTTGCTGGACCGTAAGTGGAAGAATCCGGTTTGTAGTATTATTCTGCTCTCTGATGGTCAGGACACTTATACAGTGGGGAA TAGGGTGCAAACAGACCATAAAGTACTCCTTCCTGCTTCAATCCATCGTAATGCTGGATCGGATTTGCGGAGTCCAGTACATACATTTGGATTCGGTGTG GATCACGATGCAGCAGCCATGCATTCGGTTGCTGAGGCATCCGGTGGAACCTTTTCGTTCATAGAGGCTGAGAGCTCGATTCAGGATGCATTTGCTCAGT GCATTGGTGGGCTGTTGAGTGTTGTCGTACAGGAGTTGCTAGTCGAAATTGAGTGTGTTAACCTGAGTTTATGCATCCACTCGGTAAATGCAGGTAGTTA CAGAACCAGAACATCAGAAAATGGAAAAACCGGGTCAGTTGAGGTTGGAGATCTGTATGTTGAAGAAGAAAGGGATGTTTTAGTGACAATGGATATACCG GTCAATGAATCAATGGATTCGATGTCGTTACTGAATGTGAAATGCACCTACGGAGAGCCGATTACAAAAAAGAAGGTGACTTTGGAAGGATCTGGTCCGG TAACTATCCAGAGGCCTGAAGATGTTGGCCTGCAGGCAGTATCGACTGAAGTCGATAGGCAGAGAAACAGGCTACGTGCAGCTGAGGCCATGGCGGAAGC TAGACTCGCAGCAGAAAATAGCGAGCTGTCTCGAGCTGTTGAAGTACTCGAGAAGTGTCGAAAGGCTTTATCCGAGACTGCATCTGTCCGTGCTGGTGAC AGATTGTGCAATGCACTATGCTCCGAGCTGAGGGAGATGCAGGAAAGGATGGCTACTCGTAGAGTTTATGAGACTTCAGGGAGAGCCTACGTGCTGTCGG GTATGAGCTCACACTTGCTACAAAGAGCAACTGCAAGGGGCGATGCCACGGACTCTTACCAGACTCCGTCGATGGTTGACATGGTGACCCGGTCTCAGAC TATGATGCTGGGGAACCCATCGTCGGCTCGAGGGAAGCTGAGGCCGGCCTTTTCATTCCCGGCTCGAACCTTGGAGCCAAGATAA
AA sequence Show only first row Show all	>Lus10016102 pacid=23171815 polypeptide=Lus10016102 locus=Lus10016102.g ID=Lus10016102.BGIv1.0 annot-version=v1.0 MVDLKQSKWRKAKMALDFTTCLYAPRTTERQDGEHTTGGEKEHHSSAAKSSSASHAPPPPLSSSSSLRLSKSGPLSKSGKRTCAICLTNMKAGHGHAIFT AECSHSYHFHCITSNVKHGNQICPVCRAKWKEVPFQSPRSENPVRRIRSNNVGWQPDNEWMNIVRRVPPLRLNTSTSSSLHPEPAVFDDDEALAQERSAE NEENVGTRRFMEVKTYTEFPAVSRYASHSDFSVLIHLKAPPKVSGSSSRVPIDLITVLDTSGSMAGTKLALLKRAMGFVIQNLAPSDRLSVVTFSSSARR VFPLRCMSESGKNEALQAVNSLLSNGGTNIAEGLRKGAKVLLDRKWKNPVCSIILLSDGQDTYTVGNRVQTDHKVLLPASIHRNAGSDLRSPVHTFGFGV DHDAAAMHSVAEASGGTFSFIEAESSIQDAFAQCIGGLLSVVVQELLVEIECVNLSLCIHSVNAGSYRTRTSENGKTGSVEVGDLYVEEERDVLVTMDIP VNESMDSMSLLNVKCTYGEPITKKKVTLEGSGPVTIQRPEDVGLQAVSTEVDRQRNRLRAAEAMAEARLAAENSELSRAVEVLEKCRKALSETASVRAGD RLCNALCSELREMQERMATRRVYETSGRAYVLSGMSSHLLQRATARGDATDSYQTPSMVDMVTRSQTMMLGNPSSARGKLRPAFSFPARTLEPR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60710			Zinc finger (C3HC4-type RING f...		Lus10016102 [exp]	0	1
AT5G60710			Zinc finger (C3HC4-type RING f...		Lus10021458 [exp]	2.4	0.7263
AT5G24430			Calcium-dependent protein kina...		Lus10023234 [exp]	4.1	0.6584
AT5G46630			Clathrin adaptor complexes med...		Lus10040086 [exp]	7.1	0.7397
AT3G58490		AtSPP1	sphingoid phosphate phosphatas...		Lus10000850 [exp]	8.0	0.6379
AT2G21270		UFD1	ubiquitin fusion degradation 1...		Lus10042053 [exp]	8.1	0.7072
AT2G43430		GLY1, GLX2-1	GLYOXALASE II, glyoxalase 2-1 ...		Lus10033662 [exp]	12.0	0.6714
AT5G27930			Protein phosphatase 2C family ...		Lus10015206 [exp]	12.5	0.7169
AT2G36220			unknown protein		Lus10022709 [exp]	13.0	0.7252
AT5G62810		ATPEX14, PED2, ...	PEROXISOME DEFECTIVE 2, peroxi...		Lus10027672 [exp]	14.5	0.7009
AT3G62220			Protein kinase superfamily pro...		Lus10010072 [exp]	20.5	0.6850

Compare expression of checked genes

Lus10016102 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.