Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08080 334 / 8e-116 ATACA7, ACA7 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) AT2G28210 266 / 4e-90 ATACA2 alpha carbonic anhydrase 2 (.1) AT1G08065 263 / 7e-88 ATACA5, ACA5 alpha carbonic anhydrase 5 (.1) AT4G20990 244 / 2e-80 ATACA4, ACA4 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) AT4G21000 211 / 9e-68 ATACA6, ACA6 A. THALIANA ALPHA CARBONIC ANHYDRASE 6, alpha carbonic anhydrase 6 (.1) AT5G04180 199 / 8e-63 ATACA3, ACA3 alpha carbonic anhydrase 3 (.1) AT3G52720 193 / 2e-60 CAH1, ATACA1, ACA1 A. THALIANA ALPHA CARBONIC ANHYDRASE 1, alpha carbonic anhydrase 1 (.1.2) AT5G56330 193 / 2e-59 ATACA8, ACA8 A. THALIANA ALPHA CARBONIC ANHYDRASE 8, alpha carbonic anhydrase 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021455 [exp] 410 / 6e-146 AT1G08080 343 / 1e-119 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Lus10016105 [exp] 398 / 4e-141 AT1G08080 333 / 1e-115 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Lus10021456 [exp] 370 / 7e-131 AT1G08080 288 / 4e-99 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Lus10021454 [exp] 352 / 6e-123 AT1G08080 300 / 1e-102 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Lus10042030 [exp] 286 / 7e-96 AT4G20990 313 / 9e-107 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) Lus10014412 [exp] 273 / 1e-91 AT1G08080 277 / 2e-93 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Lus10023915 [exp] 270 / 2e-90 AT1G08080 275 / 2e-92 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Lus10018034 [exp] 259 / 1e-85 AT4G20990 248 / 1e-81 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) Lus10018017 [exp] 225 / 6e-72 AT4G20990 240 / 4e-78 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G212800 [exp] 372 / 6e-131 AT1G08080 347 / 3e-121 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Potri.009G010200 [exp] 371 / 2e-130 AT1G08080 342 / 3e-119 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Potri.006G121900 [exp] 277 / 3e-93 AT1G08080 289 / 4e-98 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Potri.016G043700 [exp] 276 / 1e-92 AT4G20990 306 / 4e-105 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) Potri.006G047400 [exp] 254 / 3e-84 AT4G20990 289 / 4e-98 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) Potri.006G047500 [exp] 236 / 5e-77 AT4G20990 276 / 5e-93 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) Potri.006G212900 [exp] 210 / 4e-67 AT3G52720 261 / 5e-87 A. THALIANA ALPHA CARBONIC ANHYDRASE 1, alpha carbonic anhydrase 1 (.1.2) Potri.016G079600 [exp] 209 / 1e-66 AT3G52720 271 / 8e-91 A. THALIANA ALPHA CARBONIC ANHYDRASE 1, alpha carbonic anhydrase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00194 [flax] [poplar] Carb_anhydrase Eukaryotic-type carbonic anhydrase
Representative CDS sequence Show only first row Show all	>Lus10016104 pacid=23171833 polypeptide=Lus10016104 locus=Lus10016104.g ID=Lus10016104.BGIv1.0 annot-version=v1.0 ATGTCAAAGCTTCAATCAACACCACCAACAACACTATTCCCTCTCATCTTCTTGGCTCTGATCTTGCTCAGCACCATCCATTTTGCTTCGGCTCAAGAAG TTGAAAATGAAAGGGAATTCGATTACGTGGGGGATGGGGAGAACGGGCCGTCCAGATGGGGAGTGATCCACCCCGAATGGCATAGTTGTGGCAACGGAAC GATGCAGTCTCCCATCGATTTGTTGAATGATAGGGTCGATGTGGTTTCGCATTTGGGGAGGCTCAATAGAAGCTACAAGGCAGCCAATGCCACTCTTAAG AATAGAGGTCATGACATGATGCTGAAATGGGAAGGCGGGGCGGGAAGCTTCCATATGAATGGAACTGAGTACACCCTCCATCAATGCCATTGGCACTCTC CTTCTGAGCACACCATCAATGGTAAATTTTTTGCCATGGAGGCTCACATGGTACATGAAAGTGAAGATGGGAAGATTGCTGTGGTGGGAATCCTTTACAA AATCGGTAGACGCGACTCGTTCCTTGAATCGATAAGTAATCATTTTGAGGAGATCCAAGGGTTTGAGGAAGAAGAGTCTGTGGTAGGAGTGATGGATCCT AAAGACATAAGGATTGGAAGTAGAAAGTACTATAGATACATTGGATCTCTCACTGTTCCTCCTTGTACTGAAAATGTGGCATGGACTATTGTTAGAAAGG TCAAGACCGTGTCGAGAGAGCAACTAAAATTGCTTCGGGTGGCTGTTCACGATGATGCCAACACCAATGCTAGGCCGTTGCAGCCGAAATTCGGAAGGAA AGTGGAGCTATTCAGACCGGACGAGAAGGATAGCGACGATGATAAGATCGATGATTAA
AA sequence Show only first row Show all	>Lus10016104 pacid=23171833 polypeptide=Lus10016104 locus=Lus10016104.g ID=Lus10016104.BGIv1.0 annot-version=v1.0 MSKLQSTPPTTLFPLIFLALILLSTIHFASAQEVENEREFDYVGDGENGPSRWGVIHPEWHSCGNGTMQSPIDLLNDRVDVVSHLGRLNRSYKAANATLK NRGHDMMLKWEGGAGSFHMNGTEYTLHQCHWHSPSEHTINGKFFAMEAHMVHESEDGKIAVVGILYKIGRRDSFLESISNHFEEIQGFEEEESVVGVMDP KDIRIGSRKYYRYIGSLTVPPCTENVAWTIVRKVKTVSREQLKLLRVAVHDDANTNARPLQPKFGRKVELFRPDEKDSDDDKIDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08080		ATACA7, ACA7	A. THALIANA ALPHA CARBONIC ANH...		Lus10016104 [exp]	0	1
AT2G02360		ATPP2-B10	phloem protein 2-B10 (.1)		Lus10003449 [exp]	2.0	0.9076
AT2G37430	C2H2ZnF	ZAT11	C2H2 and C2HC zinc fingers sup...		Lus10030330 [exp]	4.5	0.8976
					Lus10029831 [exp]	7.1	0.8279
AT2G19330		PIRL6	plant intracellular ras group-...		Lus10003229 [exp]	7.2	0.8645
AT3G47570			Leucine-rich repeat protein ki...		Lus10030903 [exp]	9.9	0.8867
AT3G14740			RING/FYVE/PHD zinc finger supe...		Lus10042494 [exp]	19.6	0.8478
AT3G07600			Heavy metal transport/detoxifi...		Lus10016060 [exp]	19.7	0.8232
					Lus10026417 [exp]	19.7	0.8619
AT2G02990		RNS1, ATRNS1	ribonuclease 1 (.1)		Lus10012823 [exp]	26.2	0.7712
					Lus10016424 [exp]	27.1	0.8258

Compare expression of checked genes

Lus10016104 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.