Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08080 331 / 1e-114 ATACA7, ACA7 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) AT1G08065 267 / 1e-89 ATACA5, ACA5 alpha carbonic anhydrase 5 (.1) AT2G28210 258 / 8e-87 ATACA2 alpha carbonic anhydrase 2 (.1) AT4G20990 246 / 2e-81 ATACA4, ACA4 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) AT4G21000 215 / 2e-69 ATACA6, ACA6 A. THALIANA ALPHA CARBONIC ANHYDRASE 6, alpha carbonic anhydrase 6 (.1) AT5G04180 203 / 2e-64 ATACA3, ACA3 alpha carbonic anhydrase 3 (.1) AT3G52720 201 / 1e-63 CAH1, ATACA1, ACA1 A. THALIANA ALPHA CARBONIC ANHYDRASE 1, alpha carbonic anhydrase 1 (.1.2) AT5G56330 197 / 4e-61 ATACA8, ACA8 A. THALIANA ALPHA CARBONIC ANHYDRASE 8, alpha carbonic anhydrase 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021455 [exp] 502 / 0 AT1G08080 343 / 1e-119 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Lus10021454 [exp] 406 / 2e-144 AT1G08080 300 / 1e-102 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Lus10016104 [exp] 400 / 7e-142 AT1G08080 344 / 7e-120 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Lus10021456 [exp] 327 / 3e-114 AT1G08080 288 / 4e-99 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Lus10042030 [exp] 290 / 1e-97 AT4G20990 313 / 9e-107 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) Lus10014412 [exp] 268 / 1e-89 AT1G08080 277 / 2e-93 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Lus10023915 [exp] 265 / 2e-88 AT1G08080 275 / 2e-92 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Lus10018034 [exp] 258 / 4e-85 AT4G20990 248 / 1e-81 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) Lus10018017 [exp] 233 / 5e-75 AT4G20990 240 / 4e-78 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G010200 [exp] 372 / 4e-131 AT1G08080 342 / 3e-119 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Potri.004G212800 [exp] 369 / 9e-130 AT1G08080 347 / 3e-121 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Potri.006G121900 [exp] 276 / 2e-93 AT1G08080 289 / 4e-98 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Potri.016G043700 [exp] 276 / 4e-93 AT4G20990 306 / 4e-105 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) Potri.006G047400 [exp] 252 / 1e-83 AT4G20990 289 / 4e-98 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) Potri.006G047500 [exp] 246 / 3e-81 AT4G20990 276 / 5e-93 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) Potri.016G079600 [exp] 216 / 1e-69 AT3G52720 271 / 8e-91 A. THALIANA ALPHA CARBONIC ANHYDRASE 1, alpha carbonic anhydrase 1 (.1.2) Potri.006G212900 [exp] 214 / 8e-69 AT3G52720 261 / 5e-87 A. THALIANA ALPHA CARBONIC ANHYDRASE 1, alpha carbonic anhydrase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00194 [flax] [poplar] Carb_anhydrase Eukaryotic-type carbonic anhydrase
Representative CDS sequence Show only first row Show all	>Lus10016105 pacid=23171848 polypeptide=Lus10016105 locus=Lus10016105.g ID=Lus10016105.BGIv1.0 annot-version=v1.0 ATGGCAAAGCTTCCACAACCACTCCATCTCTTCCTTTGCTTCACCTTCTTCTCATCTCTCTTCTTCATCAACTCCATTCCAATGGCCTCAGGAGCTACAG AAGTCGAGAACGAGAGGGAGTTCGATTACAAGGTGGATGGGGAGAGAGGGTCGTCAAGATGGGGAGAGATTCACCCTGAGTGGCATAGTTGTAGCAATGG GACGATGCAATCTCCTATCGACTTGTTGGACGAAAATATCGAGGTGGTTTCCCATTTGGGGAGGCTCAATAGAAGCTACAAGGCGGCCAACGCCACCCTT GTTAATAGAGGCCATGACATGATGTTGAGATTTGAAGGTGGAGCAGGAAGCTTGTACATAAATGGAAGTGAATATGTACTCCAGCAATGCCATTGGCACT CTCCTTCTGAACACACCATCAATGGCAAAAGATACGCCATGGAAGCTCACATGGTCCACGAAAGCTCTGAGGGAAAGATCGCAGTGGTTGGGATTCTGTA CACCATTGGAAGCCCCGACTCGTTCCTTCAATCAATGAAGGATCATTTGCTGGATGTAGCTGGAAAGGAAGAAGAAGAGACGTCAGTGGGAGTAAGGAAT CCGAGAGACCTCAGGATTGGCAGTAGAAAATATTTCAGATACATTGGGTCTCTTACTGTCCCTCCTTGTACTGAAAATGTCACTTGGACCATTGCCAGAA AGGTTAGGACCGTGTCGAGAGAACAATTGAGATTGCTTCGTGTAGCGGTTCATGATGATTCGAACACGAATGCTAGGTCAGTGCAGCCGAAATTTGGGAG GAAAGTGAAGCTCTTCAGGCCGGATAATTAA
AA sequence Show only first row Show all	>Lus10016105 pacid=23171848 polypeptide=Lus10016105 locus=Lus10016105.g ID=Lus10016105.BGIv1.0 annot-version=v1.0 MAKLPQPLHLFLCFTFFSSLFFINSIPMASGATEVENEREFDYKVDGERGSSRWGEIHPEWHSCSNGTMQSPIDLLDENIEVVSHLGRLNRSYKAANATL VNRGHDMMLRFEGGAGSLYINGSEYVLQQCHWHSPSEHTINGKRYAMEAHMVHESSEGKIAVVGILYTIGSPDSFLQSMKDHLLDVAGKEEEETSVGVRN PRDLRIGSRKYFRYIGSLTVPPCTENVTWTIARKVRTVSREQLRLLRVAVHDDSNTNARSVQPKFGRKVKLFRPDN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08080		ATACA7, ACA7	A. THALIANA ALPHA CARBONIC ANH...		Lus10016105 [exp]	0	1
AT3G46510		ATPUB13	ARABIDOPSIS THALIANA PLANT U-B...		Lus10017444 [exp]	1.7	0.9366
AT2G36780			UDP-Glycosyltransferase superf...		Lus10027739 [exp]	4.0	0.9127
AT1G71910			unknown protein		Lus10016934 [exp]	6.3	0.9040
AT3G09010			Protein kinase superfamily pro...		Lus10040392 [exp]	6.9	0.9088
AT2G44340			VQ motif-containing protein (....		Lus10021054 [exp]	7.2	0.8812
AT1G28590			GDSL-like Lipase/Acylhydrolase...		Lus10000523 [exp]	8.5	0.8966
AT1G73990		SPPA1, SPPA	signal peptide peptidase (.1)		Lus10013332 [exp]	8.7	0.9263
AT3G19170		ATPREP1, ATZNMP	presequence protease 1 (.1.2)		Lus10014038 [exp]	14.7	0.8977
AT5G39150			RmlC-like cupins superfamily p...		Lus10033767 [exp]	17.5	0.9147
AT4G12545			Bifunctional inhibitor/lipid-t...		Lus10024624 [exp]	21.9	0.8899

Compare expression of checked genes

Lus10016105 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.