Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08080 39 / 0.0009 ATACA7, ACA7 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021454 [exp] 0 / 1 AT1G08080 300 / 1e-102 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Lus10016105 [exp] 0 / 1 AT1G08080 333 / 1e-115 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Lus10021455 [exp] 0 / 1 AT1G08080 343 / 1e-119 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Lus10021456 [exp] 0 / 1 AT1G08080 288 / 4e-99 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Lus10016104 [exp] 0 / 1 AT1G08080 344 / 7e-120 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G212800 [exp] 40 / 0.0004 AT1G08080 347 / 3e-121 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Potri.009G010200 [exp] 39 / 0.0007 AT1G08080 342 / 3e-119 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016106 pacid=23171791 polypeptide=Lus10016106 locus=Lus10016106.g ID=Lus10016106.BGIv1.0 annot-version=v1.0 ATGAATCGAGGCCATGATATTATGTTGAGATTTGAAGGTGGAGGAGGAAGCTCATACATAACTGGAAAGGAATATGTGCTCATACATGCCATTGGCACAC TCCTTCTGAGCACACCATCAACGGCAGAAGATTCGCCATGGAAGCTCCGACGGAGAGCGCGCAGTAGTTGGGGTTCTAGAAAGTTTATAGTTGACGAGTC AGCATTCACATGGCGGAAAGATATGGAAACCAAGAGAAAAGCAAAGAAGAGAGTAATGATCACTCTAGTGGTGGGGCTCATATGGATCATCCTGTCAATC GGAGTAAGGGCTGCAAACGCCTTCGACGAACATGCAAAGGTCGGTACAATCACCGCCGGAGGGCAGGTTCGTGACGATAACAAGGGCGAGACTTCATATT CGGTGGCCGGAAGTAACGTGGAAACCGCCGGCAATCACCACTACATACCACGGAAGGACTTCGGCCAGTACGGCGGAGATGGCGGCGGCTGA
AA sequence Show only first row Show all	>Lus10016106 pacid=23171791 polypeptide=Lus10016106 locus=Lus10016106.g ID=Lus10016106.BGIv1.0 annot-version=v1.0 MNRGHDIMLRFEGGGGSSYITGKEYVLIHAIGTLLLSTPSTAEDSPWKLRRRARSSWGSRKFIVDESAFTWRKDMETKRKAKKRVMITLVVGLIWIILSI GVRAANAFDEHAKVGTITAGGQVRDDNKGETSYSVAGSNVETAGNHHYIPRKDFGQYGGDGGG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10016106 [exp]	0	1
AT3G52360			unknown protein		Lus10016198 [exp]	3.2	0.8039
AT3G08860		PYD4	PYRIMIDINE 4 (.1)		Lus10009086 [exp]	13.7	0.8014
AT2G14095			unknown protein		Lus10035649 [exp]	22.7	0.8107
AT5G57685		LSB1, ATGDU3	LESS SUSCEPTIBLE TO BSCTV 1, A...		Lus10015513 [exp]	46.0	0.7979
AT5G05960			Bifunctional inhibitor/lipid-t...		Lus10000397 [exp]	47.1	0.7619
AT3G14250			RING/U-box superfamily protein...		Lus10024093 [exp]	55.6	0.7813
AT2G39510			nodulin MtN21 /EamA-like trans...		Lus10005964 [exp]	64.8	0.7693
AT5G54570		BGLU41	beta glucosidase 41 (.1)		Lus10037988 [exp]	65.1	0.7806
AT2G45510		CYP704A2	"cytochrome P450, family 704, ...		Lus10037999 [exp]	71.0	0.7692
AT1G30540			Actin-like ATPase superfamily ...		Lus10038542 [exp]	72.8	0.7733

Compare expression of checked genes

Lus10016106 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.