Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021453 [exp] 228 / 2e-73 ND / Lus10016107 [exp] 140 / 6e-39 ND / Lus10031082 [exp] 141 / 2e-36 ND / Lus10016108 [exp] 129 / 3e-35 ND / Lus10020249 [exp] 125 / 9e-31 ND / Lus10025503 [exp] 108 / 4e-25 ND / Lus10024934 [exp] 107 / 1e-24 ND / Lus10029184 [exp] 105 / 9e-24 AT1G24020 84 / 1e-18 MLP-like protein 423 (.1.2) Lus10002735 [exp] 101 / 2e-22 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0066 [flax] [poplar] Trefoil PF07468 [flax] [poplar] Agglutinin Agglutinin domain
Representative CDS sequence Show only first row Show all	>Lus10016109 pacid=23171852 polypeptide=Lus10016109 locus=Lus10016109.g ID=Lus10016109.BGIv1.0 annot-version=v1.0 ATGTCAGGAAACATATTGGCACTGCCAAAACAGTTCACCCTGAAGAGCAAGTCCAACGGCAAGTACCTGAAATACGTCGCAGAAGGCCCCCAACGCGGCC TCCTCCAGTTCTCGGAGGACCATCTTTTCAGTCCTTATGCCAAGTTCGAATCGGAACCTTACTCGAAGTCATACGAAACCAAAGAAGAACTCGTCCACCT CAGATGCTTCTACAACAACAAGTACTGGGTCGGTAACTCCGACCACTACATTTCGGGAGAAGCTGACGTGTCCGAGGAAGACCGGTCGAAACCGACATGT ACGCTGTTCAAGCCCGAATTCTTGGACGACCAAGGTCATACTGTTCGACTTCGGCATGTCCAGCTCGACCGTTACGCTCGCTTGTCCAGCCCGGACCCCT CTAAAGGATATGTAGAAATGTTAAGTGCCGGGGAGCAGCAAAAGCAGGAGGACATGTCCGACGTGTGCGAGGTGGTAAATATGCAAGACAAAATCGAACT GCCGAGATACGTTGTTCTCAAGGGAGACAATGGCAAGTACCTGACGCCTGGCCTTGGTAGGATTTATCCTTACTTCGCGGAACCCGTCAGTTATCACCCG CTCCGGTTCGATGGCCACGATCACACCGAGCCTACGGCTGTGCATGAGGTGTTTCCAGACAAGGAAGGCACCACCATTCGTTTCAAATCTGCTAAAGCCA AGAATGGTGAGTTTTGGGAACTGTGGCAGTACGGTAGCGATGAACCTTTATGGGTCATCTATGACCGTACCGAAAACACAAGGGACGCCCGCCCTACTAC GTTCCAGGTAGTAAAATTGGGCGACAACGCCATTGCTCTGAAGAGCAACACCAGCCACCAATTCTGCAAGCGACTCGATGCTAGCAATCTTCAGAGTGGT CTTGCTGCCCATACCAACAACGTAGGAGATCCATGCGCTCGAATCACGGTGGAAGAGCCCATCGACTCGAAGACCTTTGACAGCTTTGTTTACCATGAAA ACAATGCTAGGGTCCATGAGGAACCCGGCCTGAAAAATCTGGAACTGGTCGACAGGCATACCAATCCTACTCAGACAACAGAATGGAAGAAGACCTCCCA TTTCGTAGGGAAGATATCAAGCAGCACTTGGAACCGGACCACTACGACGATAAAATCGACCGAATTCAGCGTGAATTTCGAGGCGGGCAAGGAGTTGATA GAGAACCTGCCTTTACAGGTAACACTAGGCATCAACCACAAAGAGCTCGAAAAAATTACCGATACGGTCACTTGGGGAGAATCCAAAAAATACGAGGAGA ACACAGAGGTGAGCTATGAGGTGCCGCCGATGACTAAGGTGTCGATATACGAGAAGAAGAAGAAGGTGACTCGAGATATACCATTCTCTTACAGGCAGAC GAACAAGCTTCGTGATGGCCAACTCGTTACCTACACTATGCACGACGGGTTGTTTACGTACACCACCACCTTCAGCGAGACCGAGTCTTATTCGGAGAAG CTTACTGGATGA
AA sequence Show only first row Show all	>Lus10016109 pacid=23171852 polypeptide=Lus10016109 locus=Lus10016109.g ID=Lus10016109.BGIv1.0 annot-version=v1.0 MSGNILALPKQFTLKSKSNGKYLKYVAEGPQRGLLQFSEDHLFSPYAKFESEPYSKSYETKEELVHLRCFYNNKYWVGNSDHYISGEADVSEEDRSKPTC TLFKPEFLDDQGHTVRLRHVQLDRYARLSSPDPSKGYVEMLSAGEQQKQEDMSDVCEVVNMQDKIELPRYVVLKGDNGKYLTPGLGRIYPYFAEPVSYHP LRFDGHDHTEPTAVHEVFPDKEGTTIRFKSAKAKNGEFWELWQYGSDEPLWVIYDRTENTRDARPTTFQVVKLGDNAIALKSNTSHQFCKRLDASNLQSG LAAHTNNVGDPCARITVEEPIDSKTFDSFVYHENNARVHEEPGLKNLELVDRHTNPTQTTEWKKTSHFVGKISSSTWNRTTTTIKSTEFSVNFEAGKELI ENLPLQVTLGINHKELEKITDTVTWGESKKYEENTEVSYEVPPMTKVSIYEKKKKVTRDIPFSYRQTNKLRDGQLVTYTMHDGLFTYTTTFSETESYSEK LTG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10016109 [exp]	0	1
AT3G23255			unknown protein		Lus10011825 [exp]	1.4	0.8992
AT5G14210			Leucine-rich repeat protein ki...		Lus10032058 [exp]	1.4	0.9066
AT2G45850	AT-hook		AT hook motif DNA-binding fami...		Lus10030381 [exp]	2.4	0.8989
AT5G14210			Leucine-rich repeat protein ki...		Lus10032059 [exp]	3.2	0.8878
AT5G59800		ATMBD7, MBD7	ARABIDOPSIS THALIANA METHYL-CP...		Lus10040859 [exp]	5.3	0.8943
AT3G63530		BB2, BB	BIG BROTHER, RING/U-box superf...		Lus10019703 [exp]	6.3	0.8723
AT5G05730		JDL1, WEI2, TRP...	WEAK ETHYLENE INSENSITIVE 2, T...		Lus10009888 [exp]	12.4	0.8377
					Lus10026122 [exp]	13.7	0.8689
AT5G18880			RNA-directed DNA polymerase (r...		Lus10023044 [exp]	13.7	0.8843
AT5G38600			Proline-rich spliceosome-assoc...		Lus10034080 [exp]	16.7	0.8392

Compare expression of checked genes

Lus10016109 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.