Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27990 264 / 6e-82 HD PNF, BLH8 POUND-FOOLISH, BEL1-like homeodomain 8 (.1) AT5G02030 198 / 3e-57 HD PNY, BLR, BLH9, RPL, HB-6, VAN, LSN VAAMANA, REPLUMLESS, PENNYWISE, LARSON, BELLRINGER, BEL1-LIKE HOMEODOMAIN 9, POX (plant homeobox) family protein (.1) AT2G27220 175 / 1e-49 HD BLH5 BEL1-like homeodomain 5 (.1.2) AT4G34610 177 / 2e-49 HD BLH6 BEL1-like homeodomain 6 (.1.2) AT4G36870 176 / 3e-48 HD BLH2, SAW1 SAWTOOTH 1, BEL1-like homeodomain 2 (.1.2) AT2G16400 171 / 9e-48 HD BLH7 BEL1-like homeodomain 7 (.1) AT2G23760 169 / 4e-46 HD BLH4, SAW2 SAWTOOTH 2, BEL1-like homeodomain 4 (.1.2.3) AT2G35940 166 / 9e-45 HD BLH1, EDA29 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) AT1G19700 163 / 2e-44 HD BEL10, BLH10 BEL1-like homeodomain 10 (.1.2.3) AT1G75410 158 / 1e-42 HD BLH3 BEL1-like homeodomain 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021452 [exp] 783 / 0 AT2G27990 282 / 7e-89 POUND-FOOLISH, BEL1-like homeodomain 8 (.1) Lus10021498 [exp] 217 / 1e-63 AT5G02030 339 / 6e-109 VAAMANA, REPLUMLESS, PENNYWISE, LARSON, BELLRINGER, BEL1-LIKE HOMEODOMAIN 9, POX (plant homeobox) family protein (.1) Lus10022599 [exp] 204 / 9e-59 AT5G02030 339 / 7e-109 VAAMANA, REPLUMLESS, PENNYWISE, LARSON, BELLRINGER, BEL1-LIKE HOMEODOMAIN 9, POX (plant homeobox) family protein (.1) Lus10004688 [exp] 185 / 8e-54 AT5G02030 209 / 9e-62 VAAMANA, REPLUMLESS, PENNYWISE, LARSON, BELLRINGER, BEL1-LIKE HOMEODOMAIN 9, POX (plant homeobox) family protein (.1) Lus10040256 [exp] 185 / 1e-53 AT2G27990 204 / 3e-60 POUND-FOOLISH, BEL1-like homeodomain 8 (.1) Lus10013579 [exp] 172 / 1e-47 AT2G35940 427 / 1e-142 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Lus10000184 [exp] 173 / 4e-47 AT4G34610 447 / 7e-151 BEL1-like homeodomain 6 (.1.2) Lus10017481 [exp] 172 / 8e-47 AT4G34610 424 / 1e-141 BEL1-like homeodomain 6 (.1.2) Lus10028802 [exp] 172 / 9e-47 AT4G34610 447 / 1e-150 BEL1-like homeodomain 6 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G009800 [exp] 274 / 2e-83 AT2G27990 280 / 5e-84 POUND-FOOLISH, BEL1-like homeodomain 8 (.1) Potri.004G213300 [exp] 274 / 2e-83 AT2G27990 253 / 3e-74 POUND-FOOLISH, BEL1-like homeodomain 8 (.1) Potri.009G009900 [exp] 240 / 7e-71 AT2G27990 262 / 2e-77 POUND-FOOLISH, BEL1-like homeodomain 8 (.1) Potri.010G197300 [exp] 209 / 4e-62 AT5G02030 241 / 4e-73 VAAMANA, REPLUMLESS, PENNYWISE, LARSON, BELLRINGER, BEL1-LIKE HOMEODOMAIN 9, POX (plant homeobox) family protein (.1) Potri.008G061000 [exp] 203 / 1e-59 AT5G02030 235 / 9e-71 VAAMANA, REPLUMLESS, PENNYWISE, LARSON, BELLRINGER, BEL1-LIKE HOMEODOMAIN 9, POX (plant homeobox) family protein (.1) Potri.005G232000 [exp] 176 / 6e-50 AT1G75430 308 / 8e-103 BEL1-like homeodomain 11 (.1) Potri.001G216600 [exp] 181 / 8e-50 AT2G35940 377 / 7e-121 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Potri.016G069700 [exp] 177 / 1e-48 AT2G35940 501 / 1e-169 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Potri.001G100800 [exp] 176 / 2e-48 AT5G41410 440 / 4e-147 BELL 1, POX (plant homeobox) family protein (.1) Potri.009G017400 [exp] 176 / 5e-48 AT2G35940 310 / 4e-95 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07526 [flax] [poplar] POX Associated with HOX CL0123 [flax] [poplar] HTH PF00046 [flax] [poplar] Homeodomain Homeodomain
Representative CDS sequence Show only first row Show all	>Lus10016110 pacid=23171851 polypeptide=Lus10016110 locus=Lus10016110.g ID=Lus10016110.BGIv1.0 annot-version=v1.0 ATGGCCGACGACGATTCATCGCTACATTACTACCCAAAGCGGAACCGGAACCCACCACCCTACATCCAAAGAGTCACCAACTTGTCCGAATTCGTCTCCT CCTCGAATGCTTTCGAATTCGGCCGTACTAGTCCCACTTCATTTGATGGCTACGACTTGACGGCTTCCAAGCTTCATCATCATCACCAACCATTTAATAT TGATCAGAGCTATCAGGATTCGATCAATTTTCCTGCAGCTCATGGTGCTCAGGAAATGTTGACCAATTCGAGACGAAACGAGGGTTTGTCCTTGTCTCTC GCCTCGAATAATATTCCTCGTTGCGGACTCATTCGGACGCCGACAAGTTGTAGTGGTAATGGACCACTTGGTCCTTTCATGGGGTACGCAACAATATTGA AGAACTCGAGGTACTTGAGGCCGGCTCAGGACCTAATGGAGCAATGGTGCGGCACCACCAAAGTCATGAACTCGGCCGCATTTCATAGCTCGAATGAAGT ACTAGCCAACTACGTCGCTGACTATAGTGGTGTTGGATGCACTAGTTCACGTGGTGTAACGAACTGCCATGAGATGAAAGCGAGGCTTTCATATCTGCTT GAAGAGGTGTGCAAGAGGTACAAGGTGTACAACCAGCAAATTCAGATGGTGGTGTCGTCGTTTGAGACTGTAGCTGGGCTCGGATCTTCGACGCCCTACG CATCGTCGGCGTTCAAGTCGATGTCTAGGAAGTTCAAGTCGATGAAGCAAGTGATCCTTGACCAGCTGAGGCAAGTGACCAAGGTGCTTGGTGATGAGTT GGTGGGCCGGCAGATTATTGGGCCATCGAATTTGGGCTTTTTCCATGAAGCCCATCAGCATGTGTATAGGTCCCAGAGAGGGCTGCCTGAAGGAGCCGTT GCTGTTCTTCGTGGTTGGCTCTTTGACCATTTTCTTCACCCGTACCCTACGGATGTTGATAAGCACCTTTTGGCTACTCAAACCGGGCTGACTCGAAACC AGGTATCAAATTGGTTCATAAACGCCAGAGTGAGAATCTGGAAGCCAATGGTGGAAGAGATACACAAGCTCGAGAGCAGCCACAACGTGGTAGACCATCC TGGTCTGAGTAATTTGACAGTCGAACACGACTACAATGGGTTCGGGCCATCCAGCTCATCAATCGGTCACGAACAAGGTCAGCACCAGGGGAAGAGGTCT AGAGTTGAGTTTGTTCAATTCCCAATGAACAATGGCAGTACTATTGGGAACTCAGTGTCGTTGACCTTGGGACTCAGGCATGGCTTTGTGGAGAACGTAA GTCAACATCAGCATCAAAGGTTGCAAGAGCATGAAGATAGGCTTAGGAGGGAGTTTGGTGGTGGGTATGGCGGAATGGTTCATGATTTTGGTGGTTGA
AA sequence Show only first row Show all	>Lus10016110 pacid=23171851 polypeptide=Lus10016110 locus=Lus10016110.g ID=Lus10016110.BGIv1.0 annot-version=v1.0 MADDDSSLHYYPKRNRNPPPYIQRVTNLSEFVSSSNAFEFGRTSPTSFDGYDLTASKLHHHHQPFNIDQSYQDSINFPAAHGAQEMLTNSRRNEGLSLSL ASNNIPRCGLIRTPTSCSGNGPLGPFMGYATILKNSRYLRPAQDLMEQWCGTTKVMNSAAFHSSNEVLANYVADYSGVGCTSSRGVTNCHEMKARLSYLL EEVCKRYKVYNQQIQMVVSSFETVAGLGSSTPYASSAFKSMSRKFKSMKQVILDQLRQVTKVLGDELVGRQIIGPSNLGFFHEAHQHVYRSQRGLPEGAV AVLRGWLFDHFLHPYPTDVDKHLLATQTGLTRNQVSNWFINARVRIWKPMVEEIHKLESSHNVVDHPGLSNLTVEHDYNGFGPSSSSIGHEQGQHQGKRS RVEFVQFPMNNGSTIGNSVSLTLGLRHGFVENVSQHQHQRLQEHEDRLRREFGGGYGGMVHDFGG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27990	HD	PNF, BLH8	POUND-FOOLISH, BEL1-like homeo...		Lus10016110 [exp]	0	1
AT2G27990	HD	PNF, BLH8	POUND-FOOLISH, BEL1-like homeo...		Lus10021452 [exp]	1.0	0.9702
AT4G37750	AP2_ERF	DRG, CKC1, ANT	DRAGON, COMPLEMENTING A PROTEI...		Lus10007719 [exp]	2.0	0.9577
AT4G37750	AP2_ERF	DRG, CKC1, ANT	DRAGON, COMPLEMENTING A PROTEI...		Lus10018655 [exp]	3.0	0.9558
AT3G50870	GATA	GATA18, HAN, MN...	MONOPOLE, HANABA TANARU, GATA ...		Lus10028301 [exp]	4.5	0.9141
AT1G11120			unknown protein		Lus10018564 [exp]	4.6	0.9185
AT4G00820		IQD17	IQ-domain 17 (.1)		Lus10023233 [exp]	5.0	0.9240
AT2G23950			Leucine-rich repeat protein ki...		Lus10015484 [exp]	5.7	0.9092
AT1G01730			unknown protein		Lus10030384 [exp]	6.9	0.8649
AT1G05490		CHR31	chromatin remodeling 31 (.1)		Lus10040137 [exp]	7.1	0.8842
AT1G21090			Cupredoxin superfamily protein...		Lus10028576 [exp]	7.5	0.8904

Compare expression of checked genes

Lus10016110 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.