Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041324 [exp] 207 / 4e-67 ND / Lus10029851 [exp] 134 / 3e-39 ND / Lus10019813 [exp] 130 / 3e-38 ND / Lus10000191 [exp] 130 / 5e-38 ND / Lus10039879 [exp] 129 / 1e-37 ND / Lus10014099 [exp] 129 / 1e-37 ND / Lus10014101 [exp] 128 / 2e-37 ND / Lus10028949 [exp] 126 / 1e-36 ND / Lus10019815 [exp] 126 / 2e-36 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G153100 [exp] 216 / 2e-71 ND / Potri.009G009700 [exp] 203 / 8e-67 ND / Potri.014G081900 [exp] 136 / 3e-40 ND / Potri.014G081800 [exp] 133 / 3e-39 ND / Potri.014G082700 [exp] 131 / 2e-38 ND / Potri.002G158600 [exp] 129 / 1e-37 ND / Potri.003G126200 [exp] 127 / 7e-37 ND / Potri.019G100100 [exp] 127 / 9e-37 ND / Potri.002G158700 [exp] 127 / 1e-36 ND / Potri.014G082000 [exp] 125 / 4e-36 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016111 pacid=23171805 polypeptide=Lus10016111 locus=Lus10016111.g ID=Lus10016111.BGIv1.0 annot-version=v1.0 ATGGTCATGGCCACCATGGTCCATCATGCATCCCTCTCCACTGCCGCCGGTTGCAACGGGCAATGCAAATCGGACGACGACTGTGATGGTGAGCTAGCCT GTATTCGTGGCAAGTGCAACGACGACCCAGAAGTTGGGACCACCACTTGTCGCGGCAGCCCAGGGGGTGGTCCTACTCCTCCATCATCACCTTCACCTGG CGGGGGAGTGTGCCGGGCGTCTGGAACTTTGTCGTGCGGGAGCAGATCATTCCAGCAGTTCAAATGCTCTCCGCCGGTCACCTCTACGACGAAGGCCACC TTGACCCTGAACGATTTCAGCGAAGGCGGCGATGGTGGCGCGCCTTCCGAGTGTGACGAGGAGTTCCACGAGAACGACGAGGCGGTGGGGGGGGGGGGGG TGGGGTGGTACGACGGAGGGTCGAGGTGCGGCAAGAAGATCAAGATCACGGCGAGTAACGGAAAAACCGTGGTGGCAAAGGTGGTCGACGAGTGCGACTC CGTCAACGGTTGCGATAAGGAGCACGCCGGGCTTCCGCCGTGCAAGAATAACATCGTCGACGGGTCGGCCCAGGTGTGGAAGGTTTTGGGCCTGAATCAG GATTTAGGCCTCGTTCCGGTTACTTGGACCATGGTTTGA
AA sequence Show only first row Show all	>Lus10016111 pacid=23171805 polypeptide=Lus10016111 locus=Lus10016111.g ID=Lus10016111.BGIv1.0 annot-version=v1.0 MVMATMVHHASLSTAAGCNGQCKSDDDCDGELACIRGKCNDDPEVGTTTCRGSPGGGPTPPSSPSPGGGVCRASGTLSCGSRSFQQFKCSPPVTSTTKAT LTLNDFSEGGDGGAPSECDEEFHENDEAVGGGGVGWYDGGSRCGKKIKITASNGKTVVAKVVDECDSVNGCDKEHAGLPPCKNNIVDGSAQVWKVLGLNQ DLGLVPVTWTMV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10016111 [exp]	0	1
AT1G23850			unknown protein		Lus10030860 [exp]	4.0	0.9168
AT5G36930			Disease resistance protein (TI...		Lus10030498 [exp]	8.2	0.9194
AT3G16360		AHP4	HPT phosphotransmitter 4 (.1.2...		Lus10025821 [exp]	8.7	0.9107
AT3G47570			Leucine-rich repeat protein ki...		Lus10040185 [exp]	12.0	0.9015
AT1G65480		FT	FLOWERING LOCUS T, PEBP (phosp...		Lus10004452 [exp]	12.4	0.9059
AT3G24503		ALDH1A, REF1, A...	REDUCED EPIDERMAL FLUORESCENCE...		Lus10024260 [exp]	13.6	0.9059
AT3G46290		HERK1	hercules receptor kinase 1 (.1...		Lus10012647 [exp]	14.1	0.9144
AT5G39160			RmlC-like cupins superfamily p...		Lus10034254 [exp]	14.4	0.9059
AT5G41850			alpha/beta-Hydrolases superfam...		Lus10023100 [exp]	14.5	0.9037
AT5G26170	WRKY	ATWRKY50, WRKY5...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10006848 [exp]	14.7	0.8872

Compare expression of checked genes

Lus10016111 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.