Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15042 101 / 2e-25 Leucine-rich repeat (LRR) family protein (.1) AT5G25910 98 / 3e-24 AtRLP52 receptor like protein 52 (.1) AT3G05660 98 / 4e-24 AtRLP33 receptor like protein 33 (.1) AT3G11010 97 / 1e-23 AtRLP34 receptor like protein 34 (.1) AT2G15080 93 / 2e-22 AtRLP19 receptor like protein 19 (.1.2) AT3G05650 92 / 3e-22 AtRLP32 receptor like protein 32 (.1) AT1G47890 89 / 5e-21 AtRLP7 receptor like protein 7 (.1) AT5G27060 87 / 3e-20 AtRLP53 receptor like protein 53 (.1) AT3G11080 86 / 7e-20 AtRLP35 receptor like protein 35 (.1) AT2G25470 85 / 1e-19 AtRLP21 receptor like protein 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004313 [exp] 177 / 3e-52 AT2G33060 335 / 5e-103 receptor like protein 27 (.1) Lus10004310 [exp] 176 / 1e-51 AT2G33060 358 / 6e-111 receptor like protein 27 (.1) Lus10004309 [exp] 154 / 3e-46 AT1G47890 225 / 6e-66 receptor like protein 7 (.1) Lus10006824 [exp] 144 / 9e-41 AT3G23110 185 / 2e-50 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) Lus10002214 [exp] 138 / 7e-39 AT3G05660 293 / 2e-89 receptor like protein 33 (.1) Lus10003387 [exp] 135 / 4e-37 AT1G47890 394 / 3e-120 receptor like protein 7 (.1) Lus10006825 [exp] 130 / 2e-35 AT1G47890 377 / 6e-114 receptor like protein 7 (.1) Lus10003389 [exp] 129 / 6e-35 AT1G45616 432 / 7e-135 receptor like protein 6 (.1) Lus10026415 [exp] 126 / 7e-34 AT1G47890 424 / 3e-131 receptor like protein 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G120600 [exp] 130 / 1e-35 AT1G47890 441 / 7e-137 receptor like protein 7 (.1) Potri.016G120532 [exp] 123 / 4e-33 AT1G45616 325 / 9e-98 receptor like protein 6 (.1) Potri.012G016715 [exp] 110 / 4e-29 AT2G33060 247 / 1e-74 receptor like protein 27 (.1) Potri.012G005600 [exp] 109 / 3e-28 AT1G45616 379 / 3e-115 receptor like protein 6 (.1) Potri.012G028101 [exp] 107 / 2e-27 AT3G11080 400 / 1e-123 receptor like protein 35 (.1) Potri.012G021940 [exp] 105 / 2e-27 AT2G33060 229 / 6e-68 receptor like protein 27 (.1) Potri.012G020600 [exp] 106 / 3e-27 AT3G05660 372 / 2e-115 receptor like protein 33 (.1) Potri.012G029000 [exp] 105 / 6e-27 AT3G05660 373 / 2e-114 receptor like protein 33 (.1) Potri.012G027600 [exp] 105 / 1e-26 AT1G71400 395 / 1e-121 receptor like protein 12 (.1) Potri.012G019850 [exp] 105 / 1e-26 AT4G13810 309 / 2e-94 receptor like protein 47 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10016112 pacid=23171794 polypeptide=Lus10016112 locus=Lus10016112.g ID=Lus10016112.BGIv1.0 annot-version=v1.0 ATGGATTATGAAAACAGAACACAAGATCTCATCAAATTTAAGTCGTCCACAGCATTAGGTGGCTATTATCAAGATTCCATAACCGTGAGCAAGGGTTCTG GTGTCGAATTGAAATTTGTGAAGGTCTTGAATATATTTAAGTATATTGATTTGTCAAGCCACAATTTTAGTGGGCCAATACCAAAAGTTATAGGAAATTT CAAAGCACTCAAGGTTCTCAACTTATCCCACAATGCTTTTATTAGCCGAATTCCATCAACATTTGGTAACTTGTCAAGCTTGGAGTCTCTAAACCTCTCT CATAAAATGCTTAGTGGACATATACCAATGGAGTTAGCGGACTTGACATTCCTTGCAATCTTGAACCTTTCGGTTAATCATTTAGTTGGCAGCATCCCAA TCGGCAGACAATTACAAACATTTGAAGGCCAAAACCGACGGAGCAACAAGCGGACAGTGAAAACCCGGTCACCACCCCTGCAATTTCATAATGCCTAA
AA sequence Show only first row Show all	>Lus10016112 pacid=23171794 polypeptide=Lus10016112 locus=Lus10016112.g ID=Lus10016112.BGIv1.0 annot-version=v1.0 MDYENRTQDLIKFKSSTALGGYYQDSITVSKGSGVELKFVKVLNIFKYIDLSSHNFSGPIPKVIGNFKALKVLNLSHNAFISRIPSTFGNLSSLESLNLS HKMLSGHIPMELADLTFLAILNLSVNHLVGSIPIGRQLQTFEGQNRRSNKRTVKTRSPPLQFHNA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G25910		AtRLP52	receptor like protein 52 (.1)		Lus10016112 [exp]	0	1
AT4G35420		TKPR1, DRL1	tetraketide alpha-pyrone reduc...		Lus10006141 [exp]	1.7	0.9293
AT5G45840			Leucine-rich repeat protein ki...		Lus10007281 [exp]	2.8	0.8895
					Lus10040835 [exp]	3.5	0.8570
AT1G07860			unknown protein		Lus10036143 [exp]	6.3	0.7614
					Lus10009381 [exp]	6.7	0.8144
					Lus10005747 [exp]	7.2	0.8481
AT3G14040			Pectin lyase-like superfamily ...		Lus10041051 [exp]	7.3	0.6206
AT1G65810			P-loop containing nucleoside t...		Lus10035774 [exp]	7.5	0.8030
					Lus10041320 [exp]	9.2	0.8102
AT2G29880			unknown protein		Lus10005028 [exp]	9.5	0.7159

Compare expression of checked genes

Lus10016112 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.