Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57120 399 / 8e-135 Protein kinase superfamily protein (.1) AT1G51940 113 / 2e-26 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) AT2G33580 111 / 9e-26 Protein kinase superfamily protein (.1) AT1G21230 106 / 5e-24 WAK5 wall associated kinase 5 (.1) AT1G21210 106 / 7e-24 WAK4 wall associated kinase 4 (.1) AT1G24030 102 / 2e-23 Protein kinase superfamily protein (.1.2) AT1G79680 104 / 3e-23 ATWAKL10 WALL ASSOCIATED KINASE (WAK)-LIKE 10 (.1) AT1G06700 101 / 4e-23 Protein kinase superfamily protein (.1.2) AT3G21630 103 / 6e-23 LYSMRLK1, CERK1 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) AT1G01540 101 / 8e-23 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038716 [exp] 341 / 2e-111 AT3G57120 407 / 1e-138 Protein kinase superfamily protein (.1) Lus10021451 [exp] 325 / 6e-109 AT3G57120 259 / 4e-85 Protein kinase superfamily protein (.1) Lus10027054 [exp] 171 / 1e-47 AT3G57120 213 / 2e-64 Protein kinase superfamily protein (.1) Lus10011518 [exp] 145 / 7e-38 AT3G57120 173 / 6e-49 Protein kinase superfamily protein (.1) Lus10011517 [exp] 140 / 2e-36 AT3G57120 182 / 2e-52 Protein kinase superfamily protein (.1) Lus10029720 [exp] 127 / 4e-32 AT3G57120 142 / 6e-38 Protein kinase superfamily protein (.1) Lus10006841 [exp] 118 / 8e-28 AT1G51940 812 / 0.0 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10004625 [exp] 117 / 1e-27 AT1G51940 347 / 7e-111 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10026689 [exp] 116 / 3e-27 AT1G51940 348 / 4e-111 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G009600 [exp] 451 / 3e-155 AT3G57120 444 / 6e-154 Protein kinase superfamily protein (.1) Potri.008G037501 [exp] 375 / 8e-126 AT3G57120 411 / 3e-141 Protein kinase superfamily protein (.1) Potri.010G224900 [exp] 355 / 6e-118 AT3G57120 414 / 2e-142 Protein kinase superfamily protein (.1) Potri.008G037401 [exp] 348 / 2e-115 AT3G57120 371 / 2e-125 Protein kinase superfamily protein (.1) Potri.005G259600 [exp] 128 / 4e-31 AT2G33580 637 / 0.0 Protein kinase superfamily protein (.1) Potri.001G190200 [exp] 120 / 1e-28 AT1G51940 824 / 0.0 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.008G187500 [exp] 115 / 5e-27 AT1G51940 362 / 7e-117 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.005G128200 [exp] 115 / 6e-27 AT2G23770 514 / 4e-176 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.005G128300 [exp] 113 / 2e-26 AT2G23770 394 / 2e-129 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.006G252600 [exp] 110 / 2e-25 AT1G51940 326 / 4e-103 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10016113 pacid=23171817 polypeptide=Lus10016113 locus=Lus10016113.g ID=Lus10016113.BGIv1.0 annot-version=v1.0 ATGGTCCAAGTAGCAACAAACCAAGGCCCAGCTTCTTCCATACTGCCGGAGATCCATCGACGATATTTGTTTTGCATGGCGGCAGTGACCGGGTCGGGTC TTGTTGAAGCCGCGCTTACCCGACTCAAACAGTTCGCTTTAATTTATTTTCATTATCCTTTCTTCTTCTTCTTCAACCGAGTCCTCCAAAAGCTCCGCCT CCCCACATGTGCAGAACGAAAATGGCTGTGGCAGCCGCCCCCGCCGCCCCCCGCCGGTCGCGCCTGTCCGATCTCTCACACGCCTCGAGCGTCACATTCT TCCAGACGGACTCGTCGTTCTTCCTCCACCACCGGAACAACTCAGTCCTCCTCCCGAACTCCTAATCGCCCTCCTCCTCCCGAGTCTCCTCGCGATCGTC TCACATTCACATCCTCAGCGGCGGCGGCGGCGGCATCCTCTTCCGTCTACTCAGACCCATCTTCCAGCGCCAACTACACCACCTCATCCTCATCCCTCTC TAGCCGGACTTCCCTCTCCAGCCTCCGCGACTCCTTATCCCAAAACCCTCACATTTACGACATCTCCGAGATCCGTCGCGCCACCAACAACTTCCTCACG AAAACCTACTCCTCATCCTCCTCCTGCTGGCGGTGCAACTTGCGAGGAACCACGGACGCGATCGTCTTCCAGCGCAAGTTCAGACGGAAGATCGAGACCG ATCGATTGAAGGAGCTTTTATCCGTCATCTGCAGGAGCAATCACGTCACCGTGGTGAGACTCCTCGGTGCGTCGTTATCCGGTGACTACATTTACCTTGT GTACGAGTTCGTTAAGGGAGCGAATCTCGCCGATTGCTTGAGAAACGTTAGGAATCCCGATTTCACTGTCCTATCGAGCTGGATCTCCAGGATTAGAATC GCTGCAGATCTGGCTCACGCGCTCGATTACGTCCATAACAAGACGGGATTGAATATGAATCTTGTTCATAATCATTTCACCAGCAGTAGCGTCATCGTTA CGGAGCCTTCTCTCAATGCTAAGATCTGCCACTTCGGTACTGCGCAGCTCTGTGGAGAAGTCGACGACCGCGAAGGCGGCGGAGTTGGAAAACCTAATTC CGAAATCTCGCCTGTTCCCGAAGAAGAAGAAGGAGGAGGAGGAAGATCGTCTCCGCAATTGACGAGATCGAACAGCGCAGGGATGCCATTCCAAGGAGTG AGGGGGTACATGTCGCCGGAATTTCGATCCACCGGGATCGCGACGCAGAAATCCGACGTGTACGCCTTCGGAGTGGTGATTCTGGAGCTTTTGTCCGGGG AGGAGCCGATGAGGTACAGGTTCGACAAGTCAAGAGGGGAATATGTCCGGACCACGCTTATCGATACGGCAACGGCGGCGATAGCCCCGGGTTCCGCCAC CGCCGGAGATGGGAGATTGAGAAAGTGGATGGATAGGAGGCTGAAGGATTCGTTCCCAGTCGACGTGGCGGAGAGGCTTGTACGGATAGCGCTGGATTGC GTACACGTGGAAGCGGATAAACGGCCGGGAATGGGACGCGTGGCGGGGAATATTTCCAGGCTGTACATTGACTCGGAGACGTGGAATGACAGCATGAGAA TGCCTACCGACCAGATTTCCGTTTCGTTGGCGGCCAGATGA
AA sequence Show only first row Show all	>Lus10016113 pacid=23171817 polypeptide=Lus10016113 locus=Lus10016113.g ID=Lus10016113.BGIv1.0 annot-version=v1.0 MVQVATNQGPASSILPEIHRRYLFCMAAVTGSGLVEAALTRLKQFALIYFHYPFFFFFNRVLQKLRLPTCAERKWLWQPPPPPPAGRACPISHTPRASHS SRRTRRSSSTTGTTQSSSRTPNRPPPPESPRDRLTFTSSAAAAAASSSVYSDPSSSANYTTSSSSLSSRTSLSSLRDSLSQNPHIYDISEIRRATNNFLT KTYSSSSSCWRCNLRGTTDAIVFQRKFRRKIETDRLKELLSVICRSNHVTVVRLLGASLSGDYIYLVYEFVKGANLADCLRNVRNPDFTVLSSWISRIRI AADLAHALDYVHNKTGLNMNLVHNHFTSSSVIVTEPSLNAKICHFGTAQLCGEVDDREGGGVGKPNSEISPVPEEEEGGGGRSSPQLTRSNSAGMPFQGV RGYMSPEFRSTGIATQKSDVYAFGVVILELLSGEEPMRYRFDKSRGEYVRTTLIDTATAAIAPGSATAGDGRLRKWMDRRLKDSFPVDVAERLVRIALDC VHVEADKRPGMGRVAGNISRLYIDSETWNDSMRMPTDQISVSLAAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57120			Protein kinase superfamily pro...		Lus10016113 [exp]	0	1
AT2G48010		RKF3	receptor-like kinase in in flo...		Lus10029624 [exp]	4.2	0.7651
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Lus10013652 [exp]	4.6	0.7410
AT1G78700	BZR	BEH4	BES1/BZR1 homolog 4 (.1)		Lus10007319 [exp]	5.3	0.7532
AT3G27520			unknown protein		Lus10003664 [exp]	9.8	0.7362
AT3G26744	bHLH	SCRM, ATICE1, I...	SCREAM, A. THALIANA INDUCER OF...		Lus10043199 [exp]	11.2	0.7491
AT2G11890			adenylate cyclases (.1.2)		Lus10024472 [exp]	11.9	0.7629
AT1G51450		ASH2R, TRO	ARABIDOPSIS Ash2 RELATIVE, TRA...		Lus10014912 [exp]	12.4	0.7645
AT1G18490			Protein of unknown function (D...		Lus10038962 [exp]	13.9	0.7461
AT2G18280	TUB	AtTLP2	tubby like protein 2 (.1.2)		Lus10028309 [exp]	14.1	0.6996
AT5G19290			alpha/beta-Hydrolases superfam...		Lus10041399 [exp]	14.7	0.7350

Compare expression of checked genes

Lus10016113 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.