Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60740 1575 / 0 ABCG28 ATP-binding cassette G28, ABC transporter family protein (.1) AT2G37010 1358 / 0 ATNAP12 non-intrinsic ABC protein 12 (.1) AT1G53390 1255 / 0 ABCG24 ATP-binding cassette G24, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G25620 183 / 3e-48 ABCG21 ATP-binding cassette G21, ABC-2 type transporter family protein (.1.2) AT1G31770 182 / 8e-48 ABCG14 ATP-binding cassette G14, ATP-binding cassette 14 (.1) AT3G21090 174 / 4e-45 ABCG15 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) AT5G06530 174 / 7e-45 AtABCG22, ABCG22 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3) AT1G17840 172 / 2e-44 AtABCG11, WBC11, DSO, ABCG11 ,COF1, ATWBC11 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) AT1G71960 170 / 1e-43 ATABCG25, ABCG25 Arabidopsis thaliana ATP-binding cassette G25, ATP-binding casette G25, ATP-binding casette family G25 (.1) AT4G27420 169 / 2e-43 ABCG9 ATP-binding cassette G9, ABC-2 type transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021448 [exp] 1925 / 0 AT5G60740 1559 / 0.0 ATP-binding cassette G28, ABC transporter family protein (.1) Lus10041325 [exp] 1727 / 0 AT5G60740 1548 / 0.0 ATP-binding cassette G28, ABC transporter family protein (.1) Lus10038714 [exp] 1235 / 0 AT1G53390 1310 / 0.0 ATP-binding cassette G24, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10037981 [exp] 1232 / 0 AT1G53390 1330 / 0.0 ATP-binding cassette G24, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10023020 [exp] 1230 / 0 AT2G37010 1484 / 0.0 non-intrinsic ABC protein 12 (.1) Lus10023199 [exp] 918 / 0 AT2G37010 1141 / 0.0 non-intrinsic ABC protein 12 (.1) Lus10033315 [exp] 181 / 2e-49 AT1G31770 551 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10034775 [exp] 183 / 4e-48 AT1G31770 1028 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10035692 [exp] 181 / 2e-47 AT1G31770 1001 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G169000 [exp] 1680 / 0 AT5G60740 1643 / 0.0 ATP-binding cassette G28, ABC transporter family protein (.1) Potri.001G058900 [exp] 1660 / 0 AT5G60740 1672 / 0.0 ATP-binding cassette G28, ABC transporter family protein (.1) Potri.006G126100 [exp] 1390 / 0 AT2G37010 1377 / 0.0 non-intrinsic ABC protein 12 (.1) Potri.010G225200 [exp] 1390 / 0 AT1G53390 1393 / 0.0 ATP-binding cassette G24, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.004G236500 [exp] 189 / 5e-50 AT1G31770 970 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Potri.003G046800 [exp] 187 / 2e-49 AT1G31770 945 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Potri.013G111900 [exp] 183 / 3e-48 AT1G71960 795 / 0.0 Arabidopsis thaliana ATP-binding cassette G25, ATP-binding casette G25, ATP-binding casette family G25 (.1) Potri.019G083000 [exp] 181 / 2e-47 AT1G71960 782 / 0.0 Arabidopsis thaliana ATP-binding cassette G25, ATP-binding casette G25, ATP-binding casette family G25 (.1) Potri.010G131900 [exp] 179 / 8e-47 AT3G25620 852 / 0.0 ATP-binding cassette G21, ABC-2 type transporter family protein (.1.2) Potri.009G051300 [exp] 173 / 1e-44 AT3G21090 943 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10016115 pacid=23171840 polypeptide=Lus10016115 locus=Lus10016115.g ID=Lus10016115.BGIv1.0 annot-version=v1.0 ATGACCAACGAAGAGGATCGTCGACGACGTCGGAAGCGTTCTTGTTCTGTTTCATTGTTACCGGCACTTTCATTGGTGGTGGTGGTGGTGTCATTTTCGC CGTCACCGGTCTCCTGCCAAAAATCTTCCGGCGGCGGCGGCGGTGGCGTTTCTGATTCCGCAGCAGCAGGTGGAATAGGAAAAAATGACGCGAGGGATCA ATTGGTGTCGCAGATGCTCTACAAGAACTTTGCCAATTTCACCGATATCTTCAAGGCCGACATCAAGAAGCATTTTGGCTTCTGCATAACCGACGTGGAT GCAGATTGGAATGCGGCGTTCAACTTCTCCAAGAACACCAAATTCATAGCCGATTGCGCTAAGGCTACTAAAGGGGCCATGAACCAGCGCATATGCACAG CAGCAGAGGTGAAGTTCTACTTCAACAGTTTCTTCCAGAAGGGTTCGAAGAAATCGAACTATCTGCACCCGAACAAGAACTGTAACCTGACCTCGTGGGT CTCTGGGTGCGAGCCAGGGTGGGCTTGTAGCGTCAACAAAGGAACCAAGGCCGATCTCAAGAACTCCAAGGAAATGCCTCTCAGAACTTCCAACTGTGAT GCTTGCTGTGAAGGCTTCTTCTGCCCTCATGGCCTTACCTGTATGATACCGTGCCCATTGGGGAGTTACTGCCCACTGTCAAAGCTCAACAAGACTACAG GCATGTGCGACCCATACCATTACCAACTCCCTGCAGGGAAGCCTGACCATACCTGTGGAGGAGCTGATATCTGGGCCGATATCGTGAGTACTAGCGAGGT ATTCTGTTCAGCAGGATCGTACTGTCCGTCTACGGTCCAAAAGCTTCCTTGCACTAGGGGGCATTACTGCAGGACTGGTTCAACGTCTCAATCAGGGTGT TTCAAGTTAGCAACATGTGTACCTCAATCTGCAAACCAAAATATAACAGCTTATGGACTCTTGCTTTTTGCTGGACTAGGGTTCCTACTCATAATCATCT ACAACTGCTCCGATCAAGTCATCGCAACTCGCGAGAAACGACAAGCGAAAACCAGAGAGAAAGCAGTGCAAAGCGTAAAGGAGACTCAAGCGCGCGAGAA ATGGAAGTCGGCCAAGGAAACAGCAAAGAAGACCGCCATGGATTTCCAAACCCAATTCTCGAGAACATTCTCCCGCGTAAAATCGAAACGGGAAGACACA AGCTCGGGGACAAAGGGCAAGAAGAAAGACAAGGCGAACCTCACGAAGATGCTCCACGAGATCGAGAACAACCCGGATGGCCACCAGGGGTTCAACGTCG AGATTGGAGATAAGAACATCAAAAAACATGCCCCCAAGGGCAGGCAGCTGCACACACAGAGCCAGATGTTCCGGTACGCTTACGGACAGATTGAGAGGGA GAAGGCGATGCAGGAGCAGAACAAGAACCTGACATTCTCCGGGGTTATATCGATGGCTAGTGATGTCGAGATGAAAAAGAGGCTTACTATTGAGGTTTGT TTTAAGGATCTAACCCTTACCTTGAAAGGTAAGAACAAGCATTTGTTGAGATGTGTTACTGGCAAGCTTTCACCGGGCCGAGTTTCGGCTGTTATGGGGC CATCTGGTGCTGGCAAAACTACCTTCCTCTCAGCCTTGACTGGCAAGGCACCTGGATGTAGTGTGTCCGGTATGGTTCTAGTCAATGGTAAAGCTGAACC GATCCAAGCGTACAAGAAGATCATCGGTTTCGTGCCTCAGGATGATATTGTCCATGGTAACTTGACCGTTGAAGAGAATCTTTGGTTCAATGCAAGCTGC AGGTTGTCTGCTGATCTACCGAAACCGGACAAGGTTCTAGTGGTCGAACGGGTAATAGAGTCCTTAGGCCTCCAACCGGTGAGGGACTCGCTCGTGGGGA CTGTCGAGAAACGAGGGATTTCGGGTGGTCAACGGAAACGAGTCAACGTGGGAATGGAGATGGTGATGGAGCCTTCACTTCTTATACTGGACGAGCCAAC TTCCGGCTTGGACAGCTCTTCTTCCCAGCTGCTGCTCAAGGCTCTTCGGCGAGAAGCTCTCGAAGGGGTGAACATTTGCATGGTTGTCCATCAACCAAGC TACACTCTATTCAGGATGTTCGACGACTTGATCCTTCTAGCAAAAGGTGGATTGACAGCGTACCACGGGCCGGTAAAGAAAGTAGAGGAGTACTTTGCAG GCCTCGGAATCACTGTTCCAGATCGAGTTAACCCACCGGATTACTTCATTGATATCCTCGAAGGCATACTCAAACCGGCCTCAGGGGTACACTACAAGCA ACTTCCGGTTCGATGGATGCTTCACAATGGATACCCGGTCCCCATGGACATGCTCCAGAGCACAGAAGGACTCGGAGGGCCCGCAGGAGAAGGCTCCAAC CGTGGAGAAGCAGGAAGGCTCAGCGAGGTGGGGTCCGAGGCTCAGTCGTTTGCTGGAGAGTTCTGGCAGGATATGAAGTCGAACGTTGAGATCAACAAGG ATAACGTGCAACATAATTTCTTGCATACGGTTGATTTATCCGGTAGAGAGACTCCTGGGATATTTCAGCAGTACAGATACTTCCTTGGCAGGGTCGGTAA GCAGAGATTACGAGAAGCAAGGACGCAAGCAGTAGACTATCTGATCTTATTGCTCGCCGGTATCTGCTTAGGAACGCTAGCGAAAGTGAGTGACGAGACT TTTGGAGCACTTGGTTACACATATACCGTCATTGCAGTTTCTCTATTGTGCAAGATTTCGGCTTTGAGATCATTTTCACTGGACAAGTTACACTACTGGA GAGAAAGAGGCTCCGGCATGAGTAGCTTGGCTTACTTCCTTGCGAAGGACACGATCGATCATTTCAACACCATCATCAAGCCTGTTGTCTACCTCTCCAT GTTCTACTTCTTCAACAATCCGAGATCGAGCATCTACGACAACTACATCGTCTTGGTGTCCCTCGTTTACTGCGTCACTGGCTTAGCCTATATCCTGGCT ATTGCCTTCGAAGCCGGTCCAGCTCAATTGTGGTCAGTGCTGCTTCCGGTCGTATTGACCCTAATCGCAACCCGGAATGATGGTGGCTTGGCCGGTCGCC TCTCTGACGCATGCTACACCAAATGGGCGTTGGAAGCCTTTGTTATATCAAACGCCAAAAGATACAACGGAGTTTGGCTGATAACACGATGCGGTTCGCT CATGGAAAACGGGTACGATCTCAACCATTGGAACCGTTGCCTAATCCTTCTCGGCCTAACCGGTTTCGCTAGTCGGGTTGTTGCCTTCATCGTCCTTGTT ACCTGTCAGAAGAGGTGA
AA sequence Show only first row Show all	>Lus10016115 pacid=23171840 polypeptide=Lus10016115 locus=Lus10016115.g ID=Lus10016115.BGIv1.0 annot-version=v1.0 MTNEEDRRRRRKRSCSVSLLPALSLVVVVVSFSPSPVSCQKSSGGGGGGVSDSAAAGGIGKNDARDQLVSQMLYKNFANFTDIFKADIKKHFGFCITDVD ADWNAAFNFSKNTKFIADCAKATKGAMNQRICTAAEVKFYFNSFFQKGSKKSNYLHPNKNCNLTSWVSGCEPGWACSVNKGTKADLKNSKEMPLRTSNCD ACCEGFFCPHGLTCMIPCPLGSYCPLSKLNKTTGMCDPYHYQLPAGKPDHTCGGADIWADIVSTSEVFCSAGSYCPSTVQKLPCTRGHYCRTGSTSQSGC FKLATCVPQSANQNITAYGLLLFAGLGFLLIIIYNCSDQVIATREKRQAKTREKAVQSVKETQAREKWKSAKETAKKTAMDFQTQFSRTFSRVKSKREDT SSGTKGKKKDKANLTKMLHEIENNPDGHQGFNVEIGDKNIKKHAPKGRQLHTQSQMFRYAYGQIEREKAMQEQNKNLTFSGVISMASDVEMKKRLTIEVC FKDLTLTLKGKNKHLLRCVTGKLSPGRVSAVMGPSGAGKTTFLSALTGKAPGCSVSGMVLVNGKAEPIQAYKKIIGFVPQDDIVHGNLTVEENLWFNASC RLSADLPKPDKVLVVERVIESLGLQPVRDSLVGTVEKRGISGGQRKRVNVGMEMVMEPSLLILDEPTSGLDSSSSQLLLKALRREALEGVNICMVVHQPS YTLFRMFDDLILLAKGGLTAYHGPVKKVEEYFAGLGITVPDRVNPPDYFIDILEGILKPASGVHYKQLPVRWMLHNGYPVPMDMLQSTEGLGGPAGEGSN RGEAGRLSEVGSEAQSFAGEFWQDMKSNVEINKDNVQHNFLHTVDLSGRETPGIFQQYRYFLGRVGKQRLREARTQAVDYLILLLAGICLGTLAKVSDET FGALGYTYTVIAVSLLCKISALRSFSLDKLHYWRERGSGMSSLAYFLAKDTIDHFNTIIKPVVYLSMFYFFNNPRSSIYDNYIVLVSLVYCVTGLAYILA IAFEAGPAQLWSVLLPVVLTLIATRNDGGLAGRLSDACYTKWALEAFVISNAKRYNGVWLITRCGSLMENGYDLNHWNRCLILLGLTGFASRVVAFIVLV TCQKR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60740		ABCG28	ATP-binding cassette G28, ABC ...		Lus10016115 [exp]	0	1
AT1G62340		ALE1	ABNORMAL LEAF-SHAPE 1, ABNORMA...		Lus10015559 [exp]	1.7	0.8510
AT5G46940			Plant invertase/pectin methyle...		Lus10043346 [exp]	4.4	0.7698
AT4G18210		ATPUP10	purine permease 10 (.1)		Lus10026130 [exp]	6.2	0.8335
AT5G16920			Fasciclin-like arabinogalactan...		Lus10013786 [exp]	6.9	0.8319
					Lus10037007 [exp]	7.4	0.7791
AT4G02210			unknown protein		Lus10027531 [exp]	8.9	0.7842
AT5G16990			Zinc-binding dehydrogenase fam...		Lus10030085 [exp]	9.8	0.8036
AT5G04620		BIO4, ATBIOF	biotin 4, biotin F (.1.2)		Lus10009662 [exp]	11.0	0.7999
AT3G27050			unknown protein		Lus10032042 [exp]	12.4	0.8033
AT5G16080		ATCXE17	carboxyesterase 17 (.1)		Lus10033548 [exp]	12.6	0.7856

Compare expression of checked genes

Lus10016115 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.