Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60760 401 / 2e-135 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G45090 386 / 6e-130 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G61450 42 / 0.0005 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021447 [exp] 599 / 0 AT5G60760 422 / 2e-143 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10031163 [exp] 43 / 0.0003 AT5G61450 573 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10031740 [exp] 43 / 0.0003 AT5G61450 572 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G009200 [exp] 409 / 1e-138 AT5G60760 849 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.004G213500 [exp] 405 / 2e-136 AT5G60760 850 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G125700 [exp] 45 / 4e-05 AT5G61450 543 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G108000 [exp] 44 / 7e-05 AT5G61450 535 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016116 pacid=23171818 polypeptide=Lus10016116 locus=Lus10016116.g ID=Lus10016116.BGIv1.0 annot-version=v1.0 ATGGCGGAGGTAGCGAAGGTGCTGTACATAGTGGTTCTCGATGGTGAGGATGGAAGAGGCTCGTTTCGGTACACTCGTCCGGTTCTGCAGAGCACTCTTC AGCTCATGGGATGCAAAGCTCGTCATGCTTTCAAGATCAGCAGAAGGGTCTTTGAGATCATAAGAAATGCACCATCAATTGATACTCGACTGTTAAAAGA AGAGACTGACTTTTCAAGACAAAAGTTAGAGAAGGGGAATGCCAACGTTACTGGGACATTCACTCTTGAGAAAAATGGCAAAGATAAAAGTATGCCATTC GAACTGTACAAGCGGCGCACCACACTGGTTGTTAGAAGAGAGACTTTCTTAGATATTGTTTGTGATGCACTTGCGGAATACAAGTATGTGGGTCCTAACC AGAGGGCGGATCTTGTTTTAGCATGCAGAATTCGGGAAAAGAAGGAGTCGGTAACTGTCCTGTTATGTGGCACCAGTGGATGCGGAAAATCTACCTTGTC TGCATTACTGGGAAGTAGATTGGGCATTACGACCGTTGTATCCACCGACTCTATCCGTCACATGATGAGGAGCTTTGTGGACGAGAAGCAAAACCCTCTT CTTTGGGCTTCGACGTACCATGCAGGGGAGTATCTGGATCCCGAGGCTGTCGCCGAAGCAAAGGCAAGACGGAAAGCCAAAAAATTAGCTGGCACTACCA AGGAAGAAGCAGCTGCCGATGGCTCTACTACTGGGAAGCACGATAGTCAAGCTTCAGAAGCTATGATTATTAGTCCAAAACAGATGGCTGTTGAAGGATT CAAAGCTCAGAGTGAAATGGTTATCGACAGCCTCGATCGCTTGATCACTGCATGGGAGGACAGGAAAGAATCTGTCATCGTTGAGGGTGTCCACTTGAGC CTGAATTTCGTGGTAATGATTATACCTTCTGTTTCTTAG
AA sequence Show only first row Show all	>Lus10016116 pacid=23171818 polypeptide=Lus10016116 locus=Lus10016116.g ID=Lus10016116.BGIv1.0 annot-version=v1.0 MAEVAKVLYIVVLDGEDGRGSFRYTRPVLQSTLQLMGCKARHAFKISRRVFEIIRNAPSIDTRLLKEETDFSRQKLEKGNANVTGTFTLEKNGKDKSMPF ELYKRRTTLVVRRETFLDIVCDALAEYKYVGPNQRADLVLACRIREKKESVTVLLCGTSGCGKSTLSALLGSRLGITTVVSTDSIRHMMRSFVDEKQNPL LWASTYHAGEYLDPEAVAEAKARRKAKKLAGTTKEEAAADGSTTGKHDSQASEAMIISPKQMAVEGFKAQSEMVIDSLDRLITAWEDRKESVIVEGVHLS LNFVVMIIPSVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60760			P-loop containing nucleoside t...		Lus10016116 [exp]	0	1
AT1G09050			unknown protein		Lus10004495 [exp]	1.0	0.8546
AT1G21080			DNAJ heat shock N-terminal dom...		Lus10030713 [exp]	2.0	0.8363
AT3G51620			PAP/OAS1 substrate-binding dom...		Lus10042221 [exp]	2.8	0.7871
AT5G26710			Glutamyl/glutaminyl-tRNA synth...		Lus10014335 [exp]	3.2	0.8023
AT1G15750		TPL, WSIP1	WUS-INTERACTING PROTEIN 1, TOP...		Lus10006650 [exp]	4.6	0.8268
AT5G26710			Glutamyl/glutaminyl-tRNA synth...		Lus10026044 [exp]	5.3	0.8260
AT3G19540			Protein of unknown function (D...		Lus10013891 [exp]	6.0	0.7871
AT2G05710		ACO3	aconitase 3 (.1)		Lus10039678 [exp]	7.7	0.7982
AT5G23400			Leucine-rich repeat (LRR) fami...		Lus10041010 [exp]	10.2	0.7393
AT1G67325			Ran BP2/NZF zinc finger-like s...		Lus10011357 [exp]	14.7	0.7187

Compare expression of checked genes

Lus10016116 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.